Experiment set17IT005 for Pseudomonas stutzeri RCH2

Compare to:

LB with Cobalt chloride hexahydrate 0.05 mM

200 most important genes:

  gene name fitness t score description  
Psest_3938 -4.8 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_2561 -4.7 -1.3 hypothetical protein compare
Psest_1809 -3.9 -13.6 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1496 -3.8 -1.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_2872 -3.7 -2.6 protein RecA compare
Psest_4078 -3.4 -3.2 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3910 -3.2 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1814 -3.2 -18.4 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2945 -3.0 -1.9 septum site-determining protein MinC compare
Psest_3937 -3.0 -2.5 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0028 -2.9 -5.1 Coproporphyrinogen III oxidase compare
Psest_1159 -2.6 -7.7 Uncharacterized iron-regulated protein conserved
Psest_0503 -2.6 -2.2 Acyl dehydratase compare
Psest_3926 -2.6 -12.3 GTP-binding protein TypA/BipA compare
Psest_3565 -2.5 -1.9 hypothetical protein compare
Psest_2711 -2.5 -2.7 PilZ domain. compare
Psest_0260 -2.4 -1.7 Cell division protein compare
Psest_0678 -2.3 -3.9 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_1158 -2.3 -10.6 Predicted thiol oxidoreductase compare
Psest_3697 -2.2 -2.0 Outer membrane lipoprotein carrier protein LolA. compare
Psest_0259 -2.2 -1.5 cell division ATP-binding protein FtsE compare
Psest_2566 -2.2 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_0857 -2.1 -2.1 Membrane transporters of cations and cationic drugs compare
Psest_2946 -2.0 -2.8 septum site-determining protein MinD compare
Psest_3550 -1.9 -1.8 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_2744 -1.9 -1.5 Uncharacterized conserved protein compare
Psest_4049 -1.9 -1.1 hypothetical protein compare
Psest_1012 -1.8 -4.2 Signal transduction histidine kinase compare
Psest_0212 -1.8 -2.5 exodeoxyribonuclease V, gamma subunit compare
Psest_1563 -1.8 -1.9 Protein of unknown function (DUF548). compare
Psest_1157 -1.8 -5.1 Predicted periplasmic lipoprotein conserved
Psest_4310 -1.7 -1.7 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1013 -1.7 -2.8 phosphoribosylamine--glycine ligase compare
Psest_4191 -1.7 -3.3 Transcriptional regulator compare
Psest_2123 -1.7 -1.9 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3002 -1.7 -1.8 Putative translation initiation inhibitor, yjgF family compare
Psest_2101 -1.6 -1.5 hypothetical protein compare
Psest_0697 -1.6 -2.4 ribosomal protein L9 compare
Psest_2726 -1.6 -1.6 Rhodanese-related sulfurtransferase compare
Psest_0691 -1.6 -8.7 ribonuclease R compare
Psest_0845 -1.6 -0.9 hypothetical protein compare
Psest_1079 -1.5 -4.5 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_0164 -1.5 -0.9 Glutaredoxin, GrxC family compare
Psest_1156 -1.5 -4.0 outer membrane component of uptake system, probably for ferrous iron (from data) conserved
Psest_1354 -1.5 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0692 -1.5 -2.7 rRNA methylase, putative, group 3 compare
Psest_3546 -1.5 -1.0 Phosphatidylglycerophosphatase A and related proteins compare
Psest_1115 -1.4 -2.4 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0243 -1.4 -1.1 hypothetical protein compare
Psest_2150 -1.4 -1.8 DNA polymerase LigD, polymerase domain compare
Psest_4098 -1.4 -3.2 Superfamily I DNA and RNA helicases compare
Psest_2714 -1.4 -1.6 7-cyano-7-deazaguanine reductase compare
Psest_0514 -1.4 -3.9 lytic murein transglycosylase B compare
Psest_1975 -1.4 -6.2 Predicted transcriptional regulators compare
Psest_3168 -1.3 -1.5 Molybdopterin converting factor, large subunit compare
Psest_4393 -1.3 -4.2 Capsule polysaccharide export protein compare
Psest_4211 -1.3 -2.9 conserverd hypothetical protein compare
Psest_1417 -1.3 -1.1 hypothetical protein compare
Psest_2001 -1.3 -0.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1951 -1.3 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_4132 -1.3 -4.9 alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) compare
Psest_0442 -1.3 -2.4 ATPases of the AAA+ class compare
Psest_1089 -1.3 -2.6 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_1463 -1.3 -0.9 SufE protein probably involved in Fe-S center assembly compare
Psest_0485 -1.3 -2.8 clan AA aspartic protease, TIGR02281 family compare
Psest_1026 -1.3 -2.8 Uncharacterized iron-regulated protein compare
Psest_1288 -1.3 -4.7 Putative multicopper oxidases compare
Psest_2768 -1.2 -1.6 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_1704 -1.2 -0.8 Dehydrogenases (flavoproteins) compare
Psest_3146 -1.2 -1.6 hypothetical protein compare
Psest_3995 -1.2 -2.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3077 -1.2 -2.2 Protein of unknown function (DUF3203). compare
Psest_2720 -1.2 -2.1 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3408 -1.2 -3.1 Predicted transcriptional regulators compare
Psest_0191 -1.2 -0.8 PAS domain S-box compare
Psest_2048 -1.2 -2.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1595 -1.2 -1.0 Copper chaperone compare
Psest_4044 -1.2 -1.9 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3100 -1.2 -1.1 RNA polymerase sigma factor RpoE compare
Psest_3172 -1.2 -3.7 cation diffusion facilitator family transporter conserved
Psest_3762 -1.2 -3.2 iron donor protein CyaY compare
Psest_0508 -1.1 -5.4 gamma-glutamyl phosphate reductase compare
Psest_0660 -1.1 -1.8 Methyl-accepting chemotaxis protein compare
Psest_1204 -1.1 -1.9 Transcriptional regulators compare
Psest_0770 -1.1 -2.9 alkylphosphonate utilization operon protein PhnA compare
Psest_2344 -1.1 -2.4 Methyl-accepting chemotaxis protein compare
Psest_1022 -1.1 -5.0 Thiol:disulfide interchange protein compare
Psest_1279 -1.1 -1.7 hypothetical protein compare
Psest_0849 -1.1 -5.8 6-phosphogluconate dehydratase compare
Psest_1691 -1.1 -2.0 aminodeoxychorismate lyase compare
Psest_1762 -1.1 -1.3 cytochrome c-type biogenesis protein CcmI compare
Psest_3377 -1.1 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1582 -1.1 -1.4 Protein of unknown function (DUF3087). compare
Psest_0533 -1.1 -2.8 Sel1 repeat. compare
Psest_0398 -1.1 -4.6 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_2646 -1.1 -1.3 SOS regulatory protein LexA compare
Psest_2104 -1.1 -0.7 IscR-regulated protein YhgI compare
Psest_2786 -1.1 -0.8 Domain of unknown function (DUF3597). compare
Psest_0417 -1.1 -1.9 Acyl-CoA dehydrogenases compare
Psest_1491 -1.1 -2.2 Cold shock proteins compare
Psest_1920 -1.0 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_4010 -1.0 -1.0 peroxiredoxin, OsmC subfamily compare
Psest_1813 -1.0 -5.0 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2621 -1.0 -3.1 TadE-like protein. compare
Psest_1999 -1.0 -0.8 pseudouridine synthase compare
Psest_0790 -1.0 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2894 -1.0 -1.6 addiction module antidote protein, HigA family compare
Psest_3480 -1.0 -1.3 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1259 -1.0 -2.9 23S rRNA m2A2503 methyltransferase compare
Psest_2772 -1.0 -2.3 MIP family channel proteins compare
Psest_2581 -1.0 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1837 -1.0 -4.1 Endoglucanase compare
Psest_3322 -1.0 -6.7 TIGR02099 family protein compare
Psest_3850 -1.0 -0.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4390 -1.0 -2.7 hypothetical protein compare
Psest_1877 -1.0 -1.9 AraC-type DNA-binding domain-containing proteins compare
Psest_2577 -1.0 -4.1 general secretion pathway protein D compare
Psest_4309 -1.0 -2.2 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_3092 -1.0 -1.4 ribonuclease III, bacterial compare
Psest_2992 -1.0 -2.8 Uncharacterized conserved protein compare
Psest_3080 -1.0 -1.4 AraC-type DNA-binding domain-containing proteins compare
Psest_1679 -1.0 -1.3 ribonuclease, Rne/Rng family compare
Psest_2626 -1.0 -2.4 Flp pilus assembly protein CpaB compare
Psest_2794 -0.9 -2.8 Predicted permease, DMT superfamily compare
Psest_0498 -0.9 -1.0 ribosome small subunit-dependent GTPase A compare
Psest_3351 -0.9 -3.2 peptide chain release factor 3 compare
Psest_3535 -0.9 -1.7 hypothetical protein compare
Psest_3767 -0.9 -2.0 tyrosine recombinase XerC compare
Psest_3185 -0.9 -1.2 MoxR-like ATPases compare
Psest_1058 -0.9 -2.1 ribosomal-protein-alanine acetyltransferase compare
Psest_3816 -0.9 -0.8 DNA-directed RNA polymerase, omega subunit compare
Psest_1985 -0.9 -2.9 histidinol-phosphate aminotransferase compare
Psest_3753 -0.9 -2.9 Acetyltransferases compare
Psest_1215 -0.9 -1.4 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_1954 -0.9 -2.1 hypothetical protein compare
Psest_0632 -0.9 -2.4 hypothetical protein compare
Psest_0575 -0.9 -0.7 HrpA-like helicases compare
Psest_0644 -0.9 -2.2 siderophore ferric iron reductase, AHA_1954 family compare
Psest_3878 -0.9 -1.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2018 -0.9 -1.7 Uncharacterized conserved protein compare
Psest_3001 -0.9 -2.1 molybdenum ABC transporter, ATP-binding protein compare
Psest_3718 -0.9 -2.8 Tfp pilus assembly protein PilN compare
Psest_4220 -0.9 -2.0 Protein of unknown function (DUF2782). compare
Psest_3936 -0.9 -2.3 ATP-dependent protease HslVU, peptidase subunit compare
Psest_0542 -0.9 -4.6 AMP nucleosidase compare
Psest_1884 -0.9 -0.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3435 -0.9 -3.4 hypothetical protein compare
Psest_2759 -0.9 -3.6 Co/Zn/Cd efflux system component conserved
Psest_0393 -0.8 -3.8 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3904 -0.8 -0.9 hypothetical protein compare
Psest_4371 -0.8 -1.5 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2238 -0.8 -1.7 hypothetical protein compare
Psest_2613 -0.8 -0.6 hypothetical protein compare
Psest_1484 -0.8 -4.3 Thiol-disulfide isomerase and thioredoxins compare
Psest_4219 -0.8 -1.1 DNA polymerase I compare
Psest_0466 -0.8 -1.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_4043 -0.8 -1.2 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0720 -0.8 -3.1 Predicted hydrolase of the alpha/beta superfamily compare
Psest_4164 -0.8 -2.5 flagellar biosynthetic protein FliS compare
Psest_0547 -0.8 -2.0 Urease accessory protein UreF compare
Psest_2062 -0.8 -1.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0060 -0.8 -1.2 Predicted Fe-S protein compare
Psest_4061 -0.8 -2.7 sulfate ABC transporter, permease protein CysT compare
Psest_1103 -0.8 -1.9 GTP-binding protein YchF compare
Psest_1510 -0.8 -1.7 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2766 -0.8 -0.6 hypothetical protein compare
Psest_2648 -0.8 -0.8 hypothetical protein compare
Psest_3342 -0.8 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_2703 -0.8 -1.5 ATPases involved in chromosome partitioning compare
Psest_2282 -0.8 -1.9 Dihydroorotate dehydrogenase compare
Psest_1183 -0.8 -1.9 hydroxyisourate hydrolase compare
Psest_4103 -0.8 -0.8 AraC-type DNA-binding domain-containing proteins compare
Psest_4128 -0.8 -1.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0847 -0.8 -4.5 drug resistance transporter, EmrB/QacA subfamily compare
Psest_0805 -0.7 -0.9 hypothetical protein compare
Psest_2810 -0.7 -2.4 5'/3'-nucleotidase SurE compare
Psest_0684 -0.7 -1.8 GTP-binding protein HflX compare
Psest_0950 -0.7 -1.2 hypothetical protein compare
Psest_0014 -0.7 -1.5 PilZ domain. compare
Psest_3391 -0.7 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0536 -0.7 -2.7 thiamine-phosphate pyrophosphorylase compare
Psest_1659 -0.7 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1030 -0.7 -2.5 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_4303 -0.7 -0.8 HEAT repeat. compare
Psest_1120 -0.7 -2.2 uracil phosphoribosyltransferase compare
Psest_0086 -0.7 -0.8 hypothetical protein compare
Psest_2773 -0.7 -2.7 glycerol kinase compare
Psest_3339 -0.7 -2.2 Signal transduction histidine kinase compare
Psest_2645 -0.7 -3.2 Transcriptional regulator compare
Psest_1947 -0.7 -0.5 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2265 -0.7 -1.4 Outer membrane protein compare
Psest_4338 -0.7 -2.1 Fe2+-dicitrate sensor, membrane component compare
Psest_0097 -0.7 -1.1 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1974 -0.7 -1.5 integration host factor, alpha subunit compare
Psest_1055 -0.7 -4.0 Saccharopine dehydrogenase and related proteins compare
Psest_1163 -0.7 -1.7 diguanylate cyclase (GGDEF) domain compare
Psest_1408 -0.7 -2.2 Predicted unusual protein kinase compare
Psest_1686 -0.7 -1.9 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1871 -0.7 -2.5 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_1922 -0.7 -3.3 aminopeptidase N, Escherichia coli type compare


Specific Phenotypes

For 3 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas stutzeri RCH2

For stress Cobalt chloride hexahydrate across organisms