Experiment set17IT002 for Pseudomonas stutzeri RCH2

Compare to:

LB with Nickel (II) chloride hexahydrate 0.8 mM

200 most important genes:

  gene name fitness t score description  
Psest_0498 -4.2 -1.9 ribosome small subunit-dependent GTPase A compare
Psest_3338 -3.8 -2.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2018 -3.4 -2.4 Uncharacterized conserved protein compare
Psest_3399 -3.4 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0697 -3.1 -4.2 ribosomal protein L9 compare
Psest_2775 -2.9 -2.8 Glycerol-3-phosphate dehydrogenase compare
Psest_0845 -2.9 -1.1 hypothetical protein compare
Psest_0397 -2.8 -10.8 Small-conductance mechanosensitive channel compare
Psest_0678 -2.6 -4.0 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_3351 -2.6 -4.9 peptide chain release factor 3 compare
Psest_0725 -2.6 -2.5 Negative regulator of beta-lactamase expression compare
Psest_4406 -2.4 -1.7 hypothetical protein compare
Psest_2810 -2.4 -4.9 5'/3'-nucleotidase SurE compare
Psest_0844 -2.3 -5.0 High-affinity Fe2+/Pb2+ permease compare
Psest_0708 -2.2 -1.7 outer membrane assembly lipoprotein YfiO compare
Psest_1463 -2.1 -1.2 SufE protein probably involved in Fe-S center assembly compare
Psest_2646 -2.1 -2.5 SOS regulatory protein LexA compare
Psest_4219 -2.0 -2.7 DNA polymerase I compare
Psest_2122 -2.0 -1.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1167 -2.0 -1.1 hypothetical protein compare
Psest_4243 -2.0 -2.2 type VI secretion lipoprotein, VC_A0113 family compare
Psest_2945 -1.9 -1.6 septum site-determining protein MinC compare
Psest_2645 -1.9 -5.4 Transcriptional regulator compare
Psest_3377 -1.9 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1417 -1.8 -1.4 hypothetical protein compare
Psest_2764 -1.8 -1.4 hypothetical protein compare
Psest_0028 -1.8 -4.8 Coproporphyrinogen III oxidase compare
Psest_0843 -1.8 -8.5 hypothetical protein compare
Psest_1659 -1.8 -2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2088 -1.7 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_4405 -1.7 -1.9 hypothetical protein compare
Psest_0737 -1.7 -0.9 Cu(I)-responsive transcriptional regulator compare
Psest_2458 -1.7 -2.0 MoxR-like ATPases compare
Psest_2766 -1.7 -1.0 hypothetical protein compare
Psest_1516 -1.6 -2.4 Uncharacterized lipoprotein compare
Psest_4177 -1.6 -1.5 flagellar biosynthetic protein FliP compare
Psest_4393 -1.6 -4.6 Capsule polysaccharide export protein compare
Psest_0846 -1.6 -2.4 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1804 -1.6 -1.8 Superfamily II DNA and RNA helicases compare
Psest_3384 -1.5 -4.7 glutamate 5-kinase compare
Psest_2333 -1.5 -0.9 Protein of unknown function (DUF3359). compare
Psest_2718 -1.5 -1.1 hypothetical protein compare
Psest_1166 -1.5 -2.3 transcriptional regulator, ArgP family compare
Psest_0466 -1.5 -3.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0508 -1.5 -6.2 gamma-glutamyl phosphate reductase compare
Psest_0417 -1.5 -1.7 Acyl-CoA dehydrogenases compare
Psest_0533 -1.5 -3.4 Sel1 repeat. compare
Psest_3070 -1.4 -1.8 3-oxoadipyl-CoA thiolase compare
Psest_3518 -1.4 -0.9 Transcriptional regulators compare
Psest_3092 -1.4 -2.1 ribonuclease III, bacterial compare
Psest_2001 -1.4 -1.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2557 -1.4 -1.5 Protein of unknown function (DUF2474). compare
Psest_2850 -1.4 -1.3 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2744 -1.4 -1.3 Uncharacterized conserved protein compare
Psest_3777 -1.4 -2.8 diguanylate cyclase (GGDEF) domain compare
Psest_3236 -1.4 -3.1 hypothetical protein compare
Psest_3476 -1.4 -1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0309 -1.4 -0.9 RND family efflux transporter, MFP subunit compare
Psest_3304 -1.3 -4.5 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1185 -1.3 -1.9 heavy metal response regulator compare
Psest_4044 -1.3 -1.6 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3013 -1.3 -1.7 cobyrinic acid a,c-diamide synthase compare
Psest_1704 -1.3 -0.9 Dehydrogenases (flavoproteins) compare
Psest_0999 -1.3 -1.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0393 -1.3 -4.7 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0514 -1.3 -3.9 lytic murein transglycosylase B compare
Psest_4345 -1.3 -6.0 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_4370 -1.3 -2.3 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1909 -1.3 -2.3 Phosphohistidine phosphatase SixA compare
Psest_2266 -1.2 -1.8 hypothetical protein compare
Psest_4042 -1.2 -1.8 hypothetical protein compare
Psest_0722 -1.2 -4.9 Predicted ATPase compare
Psest_0660 -1.2 -2.4 Methyl-accepting chemotaxis protein compare
Psest_2585 -1.2 -0.8 pseudouridylate synthase I compare
Psest_2424 -1.2 -1.3 K+ transport systems, NAD-binding component compare
Psest_3768 -1.2 -2.6 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_1919 -1.2 -2.2 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_1920 -1.2 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_1179 -1.2 -1.4 2-hydroxy-3-oxopropionate reductase compare
Psest_0655 -1.2 -0.9 Chemotaxis signal transduction protein compare
Psest_0515 -1.2 -3.0 rare lipoprotein A compare
Psest_3806 -1.2 -4.2 Phosphomannomutase compare
Psest_0175 -1.1 -4.9 Xaa-Pro aminopeptidase compare
Psest_1282 -1.1 -1.7 Amidases related to nicotinamidase compare
Psest_2809 -1.1 -2.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0558 -1.1 -0.7 urease, beta subunit compare
Psest_3693 -1.1 -1.9 Glycosyltransferases involved in cell wall biogenesis compare
Psest_3954 -1.1 -2.0 Small protein A (tmRNA-binding) compare
Psest_3904 -1.1 -1.4 hypothetical protein compare
Psest_2394 -1.1 -2.9 TIGR01777 family protein compare
Psest_1910 -1.1 -2.8 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_3456 -1.1 -1.4 RNA polymerase sigma factor, sigma-70 family compare
Psest_3745 -1.1 -2.1 Uncharacterized enzyme of heme biosynthesis compare
Psest_3145 -1.1 -1.1 hypothetical protein compare
Psest_0707 -1.1 -3.4 MYND finger. compare
Psest_1260 -1.1 -4.2 type IV pilus biogenesis/stability protein PilW compare
Psest_4309 -1.1 -2.9 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_2988 -1.1 -3.4 aspartate kinase, monofunctional class compare
Psest_3995 -1.1 -1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3761 -1.1 -1.7 Transcription elongation factor compare
Psest_4335 -1.1 -1.8 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2011 -1.0 -4.5 Predicted permease compare
Psest_3383 -1.0 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_1163 -1.0 -2.6 diguanylate cyclase (GGDEF) domain compare
Psest_1837 -1.0 -3.8 Endoglucanase compare
Psest_4128 -1.0 -1.2 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2276 -1.0 -3.4 Aldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
Psest_0170 -1.0 -4.4 5,10-methenyltetrahydrofolate synthetase compare
Psest_1661 -1.0 -1.3 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2975 -1.0 -1.4 tRNA_Arg_CCT compare
Psest_2946 -1.0 -2.0 septum site-determining protein MinD compare
Psest_1510 -1.0 -2.2 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2591 -1.0 -1.7 3-isopropylmalate dehydratase, large subunit compare
Psest_0601 -1.0 -1.5 hypothetical protein compare
Psest_3716 -1.0 -4.8 Tfp pilus assembly protein PilP compare
Psest_3306 -1.0 -2.5 conserved hypothetical integral membrane protein compare
Psest_1055 -1.0 -5.7 Saccharopine dehydrogenase and related proteins compare
Psest_1431 -1.0 -2.5 hypothetical protein compare
Psest_2055 -1.0 -3.3 cytochrome c550 (from data) compare
Psest_4324 -1.0 -3.8 DNA repair photolyase compare
Psest_1522 -1.0 -2.1 hypothetical protein compare
Psest_0491 -1.0 -5.0 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_4061 -1.0 -2.9 sulfate ABC transporter, permease protein CysT compare
Psest_3862 -1.0 -6.3 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3936 -1.0 -2.5 ATP-dependent protease HslVU, peptidase subunit compare
Psest_2872 -0.9 -1.1 protein RecA compare
Psest_3288 -0.9 -5.7 type IV-A pilus assembly ATPase PilB compare
Psest_3305 -0.9 -3.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2892 -0.9 -1.4 Transcriptional regulator compare
Psest_2863 -0.9 -2.8 Transcriptional regulator compare
Psest_3921 -0.9 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3287 -0.9 -3.2 Type II secretory pathway, component PulF compare
Psest_2023 -0.9 -1.8 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3159 -0.9 -3.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0442 -0.9 -2.1 ATPases of the AAA+ class compare
Psest_3100 -0.9 -1.3 RNA polymerase sigma factor RpoE compare
Psest_2714 -0.9 -1.5 7-cyano-7-deazaguanine reductase compare
Psest_3447 -0.9 -1.1 Uncharacterized MobA-related protein compare
Psest_2543 -0.9 -2.8 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_1951 -0.9 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0047 -0.9 -3.3 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_3031 -0.9 -0.5 hypothetical protein compare
Psest_0164 -0.9 -0.6 Glutaredoxin, GrxC family compare
Psest_3860 -0.9 -1.6 Predicted permeases compare
Psest_0521 -0.9 -3.9 lytic murein transglycosylase compare
Psest_2917 -0.9 -3.1 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases compare
Psest_4350 -0.9 -1.9 Transcriptional regulators of sugar metabolism compare
Psest_1873 -0.9 -1.9 Predicted permease, DMT superfamily compare
Psest_1551 -0.9 -1.5 Integral membrane protein, interacts with FtsH compare
Psest_1160 -0.9 -2.0 Uncharacterized conserved protein compare
Psest_1026 -0.9 -1.0 Uncharacterized iron-regulated protein compare
Psest_4363 -0.9 -2.9 ATPases involved in chromosome partitioning compare
Psest_2862 -0.9 -3.8 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3718 -0.9 -2.4 Tfp pilus assembly protein PilN compare
Psest_3307 -0.9 -3.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1809 -0.9 -4.6 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1248 -0.9 -2.9 RNA methyltransferase, TrmH family, group 1 compare
Psest_3128 -0.9 -2.1 Protein-disulfide isomerase compare
Psest_0408 -0.8 -1.7 Protein involved in catabolism of external DNA compare
Psest_1183 -0.8 -1.7 hydroxyisourate hydrolase compare
Psest_4191 -0.8 -1.6 Transcriptional regulator compare
Psest_2067 -0.8 -0.8 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0310 -0.8 -2.0 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1284 -0.8 -3.1 exodeoxyribonuclease VII, large subunit compare
Psest_1474 -0.8 -1.1 phosphoribosylaminoimidazole synthetase compare
Psest_3819 -0.8 -1.5 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3531 -0.8 -0.9 Peptidase propeptide and YPEB domain. compare
Psest_3719 -0.8 -4.8 type IV pilus assembly protein PilM compare
Psest_2605 -0.8 -1.5 transcriptional activator RfaH compare
Psest_3212 -0.8 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1686 -0.8 -2.3 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0191 -0.8 -0.6 PAS domain S-box compare
Psest_2470 -0.8 -1.5 hypothetical protein compare
Psest_0800 -0.8 -3.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3902 -0.8 -1.7 hypothetical protein compare
Psest_2015 -0.8 -2.0 Type II secretory pathway, component PulD compare
Psest_0705 -0.8 -4.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2736 -0.8 -1.7 Transposase and inactivated derivatives compare
Psest_0855 -0.8 -2.6 NAD-dependent aldehyde dehydrogenases compare
Psest_0765 -0.8 -1.6 hypothetical protein compare
Psest_0182 -0.8 -3.3 glycine cleavage system H protein compare
Psest_1419 -0.8 -2.2 Transcriptional regulator compare
Psest_1524 -0.8 -1.8 Sel1 repeat. compare
Psest_0095 -0.8 -3.3 phosphonate C-P lyase system protein PhnH compare
Psest_1952 -0.8 -1.9 hypothetical protein compare
Psest_0573 -0.8 -3.2 cation diffusion facilitator family transporter conserved
Psest_0485 -0.8 -1.4 clan AA aspartic protease, TIGR02281 family compare
Psest_3409 -0.8 -2.6 hypothetical protein compare
Psest_2909 -0.8 -1.7 hypothetical protein compare
Psest_1947 -0.8 -0.5 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_4051 -0.8 -1.2 molybdenum-pterin binding domain compare
Psest_0902 -0.8 -2.6 Predicted transcriptional regulators compare
Psest_0014 -0.8 -1.9 PilZ domain. compare
Psest_3717 -0.8 -3.7 Tfp pilus assembly protein PilO compare
Psest_0024 -0.8 -4.0 LysM domain. compare
Psest_0165 -0.8 -2.0 protein-export chaperone SecB compare
Psest_1765 -0.8 -2.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4274 -0.8 -1.1 hypothetical protein compare
Psest_1642 -0.8 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_4056 -0.8 -1.5 FMN reductase, SsuE family compare


Specific Phenotypes

For 3 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas stutzeri RCH2

For stress Nickel (II) chloride hexahydrate across organisms