Experiment set16S343 for Ralstonia solanacearum GMI1000

Compare to:

SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet

200 most important genes:

  gene name fitness t score description  
RS_RS02605 -3.7 -4.1 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase compare
RS_RS04550 -2.7 -3.7 ADP-L-glycero-D-mannoheptose-6-epimerase compare
RS_RS15365 -2.5 -4.1 AGE family epimerase/isomerase compare
RS_RS13770 -2.4 -1.6 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
RS_RS18615 -2.4 -1.1 hypothetical protein compare
RS_RS13905 -2.3 -1.6 chorismate--pyruvate lyase compare
RS_RS07885 -2.3 -2.9 chorismate synthase compare
RS_RS08945 -2.2 -1.0 4-hydroxybutyrate dehydrogenase compare
RS_RS04740 -2.1 -0.9 hypothetical protein compare
RS_RS03160 -2.0 -0.9 cytochrome c compare
RS_RS08010 -1.9 -1.7 DUF1488 domain-containing protein compare
RS_RS14990 -1.9 -0.9 divalent-cation tolerance protein CutA compare
RS_RS07685 -1.8 -1.6 phosphate ABC transporter ATP-binding protein compare
RS_RS15300 -1.8 -8.9 glycerol-3-phosphate dehydrogenase compare
RS_RS02830 -1.8 -2.3 lipopolysaccharide heptosyltransferase II compare
RS_RS08330 -1.8 -2.8 efflux RND transporter periplasmic adaptor subunit compare
RS_RS10045 -1.8 -0.8 CoA ester lyase compare
RS_RS04485 -1.8 -3.2 DUF2059 domain-containing protein compare
RS_RS04510 -1.7 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
RS_RS00140 -1.7 -5.7 NAD-dependent succinate-semialdehyde dehydrogenase compare
RS_RS14840 -1.7 -8.3 ABC transporter permease compare
RS_RS18420 -1.7 -8.0 glucan biosynthesis protein D compare
RS_RS15570 -1.6 -1.2 DUF4440 domain-containing protein compare
RS_RS18830 -1.6 -1.0 flagellar P-ring protein FlgI compare
RS_RS06870 -1.6 -1.8 lysophospholipid transporter LplT compare
RS_RS08045 -1.6 -2.6 DNA-binding response regulator compare
RS_RS17315 -1.5 -2.3 hypothetical protein compare
RS_RS09740 -1.5 -0.7 tail protein X compare
RS_RS09750 -1.5 -2.0 hypothetical protein compare
RS_RS06760 -1.5 -1.7 CysB family HTH-type transcriptional regulator compare
RS_RS13575 -1.5 -3.0 tRNA guanosine(34) transglycosylase Tgt compare
RS_RS06040 -1.5 -4.5 LysM peptidoglycan-binding domain-containing protein compare
RS_RS21980 -1.5 -6.7 acetyltransferase compare
RS_RS01400 -1.4 -2.8 thiol:disulfide interchange protein DsbA/DsbL compare
RS_RS10435 -1.4 -2.5 DUF3106 domain-containing protein compare
RS_RS11290 -1.4 -0.6 4-carboxymuconolactone decarboxylase compare
RS_RS08205 -1.4 -2.4 RluA family pseudouridine synthase compare
RS_RS02860 -1.4 -0.8 phosphoglycerate kinase compare
RS_RS13630 -1.4 -1.1 NUDIX hydrolase compare
RS_RS19130 -1.4 -1.7 hypothetical protein compare
RS_RS10245 -1.4 -1.4 MaoC family dehydratase compare
RS_RS06790 -1.3 -1.0 ribonuclease E inhibitor RraA compare
RS_RS00835 -1.3 -2.0 oxidoreductase compare
RS_RS12830 -1.3 -6.9 membrane protein compare
RS_RS24260 -1.3 -0.6 DUF3348 domain-containing protein compare
RS_RS03455 -1.3 -3.0 glycosyltransferase family 2 protein compare
RS_RS15425 -1.3 -1.2 hypothetical protein compare
RS_RS21975 -1.3 -8.9 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
RS_RS04950 -1.3 -2.7 cytochrome c compare
RS_RS14570 -1.3 -2.2 glucan biosynthesis protein H compare
RS_RS09735 -1.3 -0.5 membrane protein compare
RS_RS21390 -1.3 -1.5 class II aldolase family protein compare
RS_RS01895 -1.2 -2.2 maleylacetoacetate isomerase compare
RS_RS09415 -1.2 -1.1 DNA primase compare
RS_RS11820 -1.2 -1.0 cytochrome B oxidoreductase compare
RS_RS09975 -1.2 -1.4 tRNA pseudouridine(38-40) synthase TruA compare
RS_RS10485 -1.2 -0.5 oxygen-binding protein (globin) compare
RS_RS14445 -1.2 -0.8 Anthranilate phosphoribosyltransferase 1 compare
RS_RS02075 -1.2 -0.9 membrane protein compare
RS_RS00845 -1.2 -1.9 short-chain dehydrogenase compare
RS_RS08505 -1.2 -0.7 nucleoid-structuring protein H-NS compare
RS_RS24630 -1.2 -2.0 DUF3293 domain-containing protein compare
RS_RS10375 -1.2 -1.8 polyribonucleotide nucleotidyltransferase compare
RS_RS12835 -1.2 -2.0 TetR/AcrR family transcriptional regulator compare
RS_RS11050 -1.2 -5.7 glycosyltransferase family 2 protein compare
RS_RS08190 -1.2 -0.7 DUF465 domain-containing protein compare
RS_RS14820 -1.2 -1.6 STAS domain-containing protein compare
RS_RS00665 -1.1 -6.1 lauroyl acyltransferase compare
RS_RS18760 -1.1 -2.4 DNA-binding protein compare
RS_RS00200 -1.1 -2.4 DNA-binding response regulator compare
RS_RS14835 -1.1 -9.2 outer membrane lipid asymmetry maintenance protein MlaD compare
RS_RS03460 -1.1 -2.1 glycosyltransferase family 2 protein compare
RS_RS25625 -1.1 -1.4 hypothetical protein compare
RS_RS07735 -1.1 -1.0 sulfite exporter TauE/SafE family protein compare
RS_RS11325 -1.1 -1.2 hypothetical protein compare
RS_RS10430 -1.1 -1.4 DUF3619 domain-containing protein compare
RS_RS03095 -1.1 -1.2 hypothetical protein compare
RS_RS09725 -1.1 -1.2 DUF3380 domain-containing protein compare
RS_RS12955 -1.1 -1.4 P-type conjugative transfer ATPase TrbB compare
RS_RS11205 -1.1 -0.7 membrane protein compare
RS_RS14825 -1.0 -6.3 hypothetical protein compare
RS_RS12175 -1.0 -1.2 sulfite exporter TauE/SafE family protein compare
RS_RS13320 -1.0 -3.2 3-deoxy-7-phosphoheptulonate synthase compare
RS_RS08230 -1.0 -3.3 beta-ketoacyl-ACP reductase compare
RS_RS22020 -1.0 -5.4 EPS I polysaccharide export inner membrane protein EpsE compare
RS_RS11945 -1.0 -2.6 iron-sulfur cluster carrier protein ApbC compare
RS_RS12960 -1.0 -1.0 CopG family transcriptional regulator compare
RS_RS14830 -1.0 -8.5 ABC transporter compare
RS_RS00930 -1.0 -1.2 conjugal transfer protein TraR compare
RS_RS25505 -1.0 -1.2 DNA-binding protein compare
RS_RS25875 -1.0 -0.4 hypothetical protein compare
RS_RS01120 -1.0 -1.1 RNA 3'-terminal phosphate cyclase compare
RS_RS13455 -1.0 -0.7 DNA starvation/stationary phase protection protein compare
RS_RS04185 -1.0 -1.4 hypothetical protein compare
RS_RS08465 -1.0 -0.6 HNH endonuclease compare
RS_RS14095 -1.0 -0.9 glutamate 5-kinase compare
RS_RS05225 -1.0 -1.4 RNA polymerase sigma factor RpoE compare
RS_RS13295 -1.0 -0.9 rhombosortase compare
RS_RS11490 -1.0 -1.1 iron oxidase compare
RS_RS14355 -1.0 -2.7 amidohydrolase compare
RS_RS13400 -1.0 -1.4 pilus assembly protein compare
RS_RS07355 -0.9 -1.1 MgtC/SapB family protein compare
RS_RS11495 -0.9 -1.7 lytic transglycosylase compare
RS_RS01515 -0.9 -0.6 ferritin compare
RS_RS14845 -0.9 -4.7 ABC transporter ATP-binding protein compare
RS_RS24920 -0.9 -0.8 DUF1778 domain-containing protein compare
RS_RS13305 -0.9 -4.0 TIGR02099 family protein compare
RS_RS05435 -0.9 -1.5 LysR family transcriptional regulator compare
RS_RS22435 -0.9 -3.5 UDP-glucose 4-epimerase GalE compare
RS_RS08050 -0.9 -4.6 PAS domain-containing sensor histidine kinase compare
RS_RS06585 -0.9 -0.6 inorganic phosphate transporter compare
RS_RS09955 -0.9 -0.4 tryptophan synthase subunit alpha compare
RS_RS22010 -0.9 -4.5 transferase compare
RS_RS01990 -0.9 -1.0 ATP-dependent protease compare
RS_RS03505 -0.9 -1.9 protein-L-isoaspartate O-methyltransferase compare
RS_RS08335 -0.9 -2.1 AcrB/AcrD/AcrF family protein compare
RS_RS05405 -0.9 -0.4 non-heme iron oxygenase ferredoxin subunit compare
RS_RS01360 -0.9 -1.0 carbonate dehydratase compare
RS_RS12730 -0.9 -3.5 N-acetylmuramoyl-L-alanine amidase compare
RS_RS00850 -0.9 -1.6 FAD-binding oxidoreductase compare
RS_RS07515 -0.9 -0.9 hypothetical protein compare
RS_RS14605 -0.9 -1.8 cytochrome o ubiquinol oxidase subunit I compare
RS_RS14675 -0.9 -1.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
RS_RS01040 -0.9 -0.6 transcriptional regulator compare
RS_RS09000 -0.9 -2.7 endolytic transglycosylase MltG compare
RS_RS19165 -0.9 -6.0 TonB-dependent receptor compare
RS_RS03910 -0.8 -1.2 DsbA family protein compare
RS_RS22015 -0.8 -5.0 EPS I polysaccharide export inner membrane protein EpsF compare
RS_RS16200 -0.8 -0.8 hypothetical protein compare
RS_RS07675 -0.8 -4.1 phosphate ABC transporter permease subunit PstC compare
RS_RS23810 -0.8 -2.0 glycine zipper 2TM domain-containing protein compare
RS_RS06120 -0.8 -0.9 FtsH protease activity modulator HflK compare
RS_RS06165 -0.8 -0.5 NAD-dependent deacylase compare
RS_RS04170 -0.8 -3.3 hypothetical protein compare
RS_RS12155 -0.8 -2.3 sulfate adenylyltransferase subunit CysD compare
RS_RS16315 -0.8 -0.3 hypothetical protein compare
RS_RS05130 -0.8 -0.9 hypothetical protein compare
RS_RS13275 -0.8 -0.8 DNA repair protein RecN compare
RS_RS05615 -0.8 -1.8 DUF1330 domain-containing protein compare
RS_RS13445 -0.8 -1.7 hypothetical protein compare
RS_RS09700 -0.8 -1.7 phage baseplate assembly protein V compare
RS_RS09965 -0.8 -0.5 tryptophan synthase subunit beta compare
RS_RS03845 -0.8 -1.9 flavin reductase compare
RS_RS08325 -0.8 -1.2 squalene synthase HpnD compare
RS_RS02580 -0.8 -0.7 ribosomal RNA small subunit methyltransferase A compare
RS_RS18335 -0.8 -3.7 peroxiredoxin compare
RS_RS16830 -0.8 -1.9 HU family DNA-binding protein compare
RS_RS19525 -0.8 -3.4 efflux RND transporter periplasmic adaptor subunit compare
RS_RS05775 -0.8 -1.7 XRE family transcriptional regulator compare
RS_RS03465 -0.8 -2.8 glycosyl transferase compare
RS_RS08220 -0.7 -2.5 class I poly(R)-hydroxyalkanoic acid synthase compare
RS_RS05465 -0.7 -3.0 sarcosine oxidase subunit beta family protein compare
RS_RS06750 -0.7 -2.4 sulfate ABC transporter permease subunit CysW compare
RS_RS05640 -0.7 -0.7 gamma carbonic anhydrase family protein compare
RS_RS16380 -0.7 -2.1 hypothetical protein compare
RS_RS12465 -0.7 -1.5 hypothetical protein compare
RS_RS09270 -0.7 -1.8 NAD(P)-dependent oxidoreductase compare
RS_RS02985 -0.7 -2.4 hypothetical protein compare
RS_RS22445 -0.7 -0.4 trehalose-phosphatase compare
RS_RS11060 -0.7 -2.0 O-antigen ligase family protein compare
RS_RS14655 -0.7 -1.8 ClpXP protease specificity-enhancing factor compare
RS_RS22145 -0.7 -2.1 RND transporter compare
RS_RS10075 -0.7 -3.6 DUF2863 domain-containing protein compare
RS_RS07560 -0.7 -0.4 universal stress protein compare
RS_RS25685 -0.7 -2.0 hypothetical protein compare
RS_RS25365 -0.7 -0.8 DNA cytosine methyltransferase compare
RS_RS11215 -0.7 -2.4 hypothetical protein compare
RS_RS04470 -0.7 -1.5 glycine zipper 2TM domain-containing protein compare
RS_RS05700 -0.7 -1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
RS_RS26075 -0.7 -0.9 hypothetical protein compare
RS_RS17330 -0.7 -0.6 DNA-binding protein compare
RS_RS11780 -0.7 -2.5 NAD+ synthase compare
RS_RS26545 -0.7 -1.3 hypothetical protein compare
RS_RS00830 -0.7 -3.3 FAD-dependent oxidoreductase compare
RS_RS18685 -0.7 -0.4 Cd(II)/Pb(II)-responsive transcriptional regulator compare
RS_RS13545 -0.7 -1.1 LysR family transcriptional regulator compare
RS_RS23050 -0.7 -1.1 (dimethylallyl)adenosine tRNA methylthiotransferase compare
RS_RS03305 -0.7 -1.2 type 4 prepilin peptidase 1 compare
RS_RS21780 -0.7 -1.5 zinc-binding protein compare
RS_RS23260 -0.7 -1.3 sulfite exporter TauE/SafE family protein compare
RS_RS01825 -0.7 -1.6 heme A synthase compare
RS_RS01830 -0.7 -1.0 protoheme IX farnesyltransferase compare
RS_RS14430 -0.7 -4.5 anthranilate synthase component I compare
RS_RS11005 -0.7 -1.4 nicotinate-nucleotide adenylyltransferase compare
RS_RS03875 -0.7 -2.2 membrane protein compare
RS_RS00190 -0.7 -3.2 copper chaperone PCu(A)C compare
RS_RS11775 -0.7 -0.7 class I SAM-dependent methyltransferase compare
RS_RS03700 -0.7 -1.7 Tol-Pal system beta propeller repeat protein TolB compare
RS_RS08675 -0.7 -1.0 peptidyl-prolyl cis-trans isomerase compare
RS_RS12925 -0.7 -2.5 P-type conjugative transfer protein TrbL compare
RS_RS25450 -0.7 -2.2 hypothetical protein compare
RS_RS13595 -0.6 -0.8 polyisoprenoid-binding protein compare
RS_RS06940 -0.6 -1.0 D-aminopeptidase compare
RS_RS02250 -0.6 -4.8 FAD-linked oxidase compare
RS_RS11300 -0.6 -0.7 3-carboxy-cis,cis-muconate cycloisomerase compare
RS_RS25070 -0.6 -2.0 acyl carrier protein compare
RS_RS11220 -0.6 -0.6 DNA-dependent helicase compare
RS_RS02000 -0.6 -0.9 hypothetical protein compare
RS_RS00350 -0.6 -0.4 peptide deformylase compare
RS_RS08925 -0.6 -1.5 class II aldolase/adducin family protein compare


Specific Phenotypes

None in this experiment

For Ralstonia solanacearum GMI1000 in stress experiments

For stress Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet across organisms