Experiment set16IT089 for Pseudomonas stutzeri RCH2

Compare to:

Lactate; aerobic; with copper, sample3

200 most important genes:

  gene name fitness t score description  
Psest_0279 -5.7 -6.7 methionine biosynthesis protein MetW compare
Psest_0155 -5.1 -7.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3864 -5.1 -13.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0508 -5.0 -5.9 gamma-glutamyl phosphate reductase compare
Psest_0326 -4.9 -19.6 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3650 -4.8 -10.2 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2590 -4.7 -1.7 3-isopropylmalate dehydratase, small subunit compare
Psest_3944 -4.7 -7.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0325 -4.7 -14.1 Putative threonine efflux protein compare
Psest_0152 -4.7 -7.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_3866 -4.7 -19.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2591 -4.7 -3.2 3-isopropylmalate dehydratase, large subunit compare
Psest_3943 -4.5 -5.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3299 -4.5 -13.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3298 -4.4 -13.1 histidinol dehydrogenase compare
Psest_3648 -4.2 -5.0 anthranilate phosphoribosyltransferase compare
Psest_0153 -4.2 -15.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_1473 -4.0 -6.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0687 -4.0 -7.6 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2578 -4.0 -13.5 O-succinylhomoserine sulfhydrylase compare
Psest_2584 -4.0 -3.8 Phosphoribosylanthranilate isomerase compare
Psest_0953 -3.9 -12.2 iron-sulfur cluster-binding protein compare
Psest_0280 -3.9 -14.9 homoserine O-acetyltransferase compare
Psest_0954 -3.8 -10.9 Fe-S oxidoreductase compare
Psest_3384 -3.6 -6.8 glutamate 5-kinase compare
Psest_0952 -3.5 -4.0 Uncharacterized conserved protein compare
Psest_2589 -3.4 -9.8 3-isopropylmalate dehydrogenase compare
Psest_0845 -3.3 -1.2 hypothetical protein compare
Psest_0529 -3.2 -14.0 Putative Mg2+ and Co2+ transporter CorC compare
Psest_3647 -3.0 -2.1 Indole-3-glycerol phosphate synthase compare
Psest_0313 -3.0 -4.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3998 -2.9 -7.9 glutamate--cysteine ligase compare
Psest_3649 -2.8 -10.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0193 -2.6 -2.5 conserved hypothetical protein compare
Psest_3818 -2.6 -10.0 endoribonuclease L-PSP, putative compare
Psest_1496 -2.6 -1.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_3297 -2.6 -13.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0393 -2.4 -9.6 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1509 -2.3 -9.4 quinolinate synthetase complex, A subunit compare
Psest_1772 -2.2 -4.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0327 -2.2 -4.3 Transcriptional regulator compare
Psest_1295 -2.2 -4.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1037 -2.1 -3.2 acetolactate synthase, small subunit compare
Psest_2329 -2.1 -12.7 Transcriptional regulator compare
Psest_3226 -2.0 -1.6 Predicted membrane protein compare
Psest_1242 -2.0 -2.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2988 -1.9 -7.1 aspartate kinase, monofunctional class compare
Psest_0062 -1.9 -3.0 tryptophan synthase, alpha subunit compare
Psest_2579 -1.8 -1.3 amidophosphoribosyltransferase compare
Psest_1686 -1.8 -6.1 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3988 -1.8 -7.5 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0718 -1.7 -4.6 nicotinate-nucleotide pyrophosphorylase compare
Psest_2324 -1.7 -11.8 hypothetical protein compare
Psest_1417 -1.5 -2.5 hypothetical protein compare
Psest_2809 -1.5 -3.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_4078 -1.5 -1.7 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1012 -1.4 -3.0 Signal transduction histidine kinase compare
Psest_3174 -1.4 -10.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2325 -1.4 -6.4 alpha-L-glutamate ligase-related protein compare
Psest_1879 -1.4 -2.5 Trk-type K+ transport systems, membrane components compare
Psest_2327 -1.4 -6.3 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_3129 -1.4 -1.2 tyrosine recombinase XerD compare
Psest_3317 -1.4 -5.2 Phosphotransferase System HPr (HPr) Family compare
Psest_1837 -1.4 -5.4 Endoglucanase compare
Psest_3720 -1.4 -9.3 penicillin-binding protein, 1A family compare
Psest_0955 -1.3 -5.1 D,L-lactate:H+ symporter (from data) compare
Psest_2744 -1.3 -2.0 Uncharacterized conserved protein compare
Psest_1486 -1.3 -3.9 hypothetical protein compare
Psest_2538 -1.3 -1.8 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2104 -1.3 -1.6 IscR-regulated protein YhgI compare
Psest_0170 -1.3 -5.2 5,10-methenyltetrahydrofolate synthetase compare
Psest_0855 -1.3 -4.6 NAD-dependent aldehyde dehydrogenases compare
Psest_0831 -1.3 -1.4 hypothetical protein compare
Psest_1814 -1.3 -9.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2067 -1.3 -1.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2308 -1.2 -1.0 Predicted Fe-S protein compare
Psest_2946 -1.2 -1.9 septum site-determining protein MinD compare
Psest_1663 -1.2 -2.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3145 -1.2 -1.3 hypothetical protein compare
Psest_0442 -1.2 -2.3 ATPases of the AAA+ class compare
Psest_2566 -1.2 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1249 -1.2 -4.0 serine O-acetyltransferase compare
Psest_1679 -1.2 -1.8 ribonuclease, Rne/Rng family compare
Psest_0466 -1.2 -3.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_4003 -1.2 -3.4 TIGR00153 family protein compare
Psest_3809 -1.2 -4.2 hypothetical protein compare
Psest_0334 -1.2 -2.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1884 -1.2 -2.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0297 -1.1 -3.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3843 -1.1 -5.9 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0191 -1.1 -1.0 PAS domain S-box compare
Psest_0958 -1.1 -4.6 Oligoketide cyclase/lipid transport protein compare
Psest_1505 -1.1 -1.6 Organic radical activating enzymes compare
Psest_4142 -1.1 -1.5 hypothetical protein compare
Psest_0218 -1.1 -3.0 Acyl-CoA hydrolase compare
Psest_4345 -1.1 -5.8 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1813 -1.1 -5.9 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3678 -1.1 -4.4 acyl-phosphate glycerol 3-phosphate acyltransferase compare
Psest_3113 -1.1 -2.1 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1277 -1.1 -7.6 2-isopropylmalate synthase, yeast type compare
Psest_3092 -1.1 -1.4 ribonuclease III, bacterial compare
Psest_0799 -1.1 -2.3 Uncharacterized protein involved in response to NO compare
Psest_3323 -1.0 -4.4 ribonuclease, Rne/Rng family compare
Psest_3565 -1.0 -1.6 hypothetical protein compare
Psest_0708 -1.0 -1.5 outer membrane assembly lipoprotein YfiO compare
Psest_3862 -1.0 -6.9 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0558 -1.0 -0.9 urease, beta subunit compare
Psest_3721 -1.0 -5.2 Malic enzyme compare
Psest_0844 -1.0 -2.5 High-affinity Fe2+/Pb2+ permease compare
Psest_1001 -1.0 -2.7 hypothetical protein compare
Psest_0922 -1.0 -2.2 alkylhydroperoxidase AhpD family core domain compare
Psest_1292 -1.0 -4.9 monothiol glutaredoxin, Grx4 family compare
Psest_4363 -1.0 -4.9 ATPases involved in chromosome partitioning compare
Psest_3927 -1.0 -3.2 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_4371 -1.0 -2.9 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0951 -0.9 -5.4 FAD/FMN-containing dehydrogenases compare
Psest_1752 -0.9 -1.5 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0722 -0.9 -3.9 Predicted ATPase compare
Psest_0182 -0.9 -3.9 glycine cleavage system H protein compare
Psest_1518 -0.9 -2.4 tRNA_Ser_CGA compare
Psest_0063 -0.9 -1.2 tryptophan synthase, beta subunit compare
Psest_2810 -0.9 -2.7 5'/3'-nucleotidase SurE compare
Psest_2090 -0.9 -2.5 Protein of unknown function (DUF2970). compare
Psest_0445 -0.9 -6.1 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1230 -0.9 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2278 -0.9 -2.1 coenzyme PQQ biosynthesis protein PqqD compare
Psest_3351 -0.9 -3.4 peptide chain release factor 3 compare
Psest_0462 -0.9 -8.0 Lipid A core - O-antigen ligase and related enzymes compare
Psest_2268 -0.9 -2.2 Alcohol dehydrogenase, class IV compare
Psest_2504 -0.9 -3.3 flagellar biosynthetic protein FliS compare
Psest_4219 -0.9 -1.0 DNA polymerase I compare
Psest_2323 -0.9 -5.4 Uncharacterized protein conserved in archaea compare
Psest_2280 -0.9 -2.9 Predicted membrane protein compare
Psest_1532 -0.9 -2.0 DNA recombination-dependent growth factor C compare
Psest_3766 -0.9 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_4134 -0.9 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3288 -0.9 -6.2 type IV-A pilus assembly ATPase PilB compare
Psest_2136 -0.9 -2.8 Predicted homoserine dehydrogenase compare
Psest_3838 -0.8 -1.6 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_1724 -0.8 -2.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1809 -0.8 -5.7 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_3438 -0.8 -4.3 Glutamate dehydrogenase/leucine dehydrogenase compare
Psest_3231 -0.8 -1.9 hypothetical protein compare
Psest_2626 -0.8 -2.2 Flp pilus assembly protein CpaB compare
Psest_0359 -0.8 -1.6 Transcriptional regulators compare
Psest_0461 -0.8 -3.3 Glycosyltransferase involved in LPS biosynthesis compare
Psest_2605 -0.8 -1.9 transcriptional activator RfaH compare
Psest_3921 -0.8 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_0296 -0.8 -4.1 glutathione synthetase, prokaryotic compare
Psest_2331 -0.8 -4.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_3853 -0.8 -1.6 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_1955 -0.8 -3.6 Predicted membrane protein compare
Psest_2923 -0.8 -1.4 hypothetical protein compare
Psest_2973 -0.8 -2.7 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_1709 -0.8 -2.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1700 -0.8 -2.2 Transcriptional regulator compare
Psest_4128 -0.8 -1.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_4252 -0.8 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_3413 -0.7 -2.0 hypothetical protein compare
Psest_2333 -0.7 -0.7 Protein of unknown function (DUF3359). compare
Psest_0284 -0.7 -5.6 pyridoxal phosphate enzyme, YggS family compare
Psest_2135 -0.7 -1.4 Peroxiredoxin compare
Psest_2561 -0.7 -0.8 hypothetical protein compare
Psest_4085 -0.7 -5.4 Biotin carboxylase compare
Psest_0615 -0.7 -5.3 RND family efflux transporter, MFP subunit compare
Psest_0902 -0.7 -2.7 Predicted transcriptional regulators compare
Psest_2798 -0.7 -2.1 Truncated hemoglobins compare
Psest_1921 -0.7 -3.2 Protein of unknown function (DUF2797). compare
Psest_0716 -0.7 -1.2 Protein of unknown function (DUF3094). compare
Psest_3795 -0.7 -4.5 Glycine/D-amino acid oxidases (deaminating) compare
Psest_1506 -0.7 -2.4 queuosine biosynthesis protein QueC compare
Psest_1479 -0.7 -2.4 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_1055 -0.7 -5.1 Saccharopine dehydrogenase and related proteins compare
Psest_1238 -0.7 -3.5 Predicted membrane protein/domain compare
Psest_4086 -0.7 -4.5 Transcriptional regulator compare
Psest_0489 -0.7 -0.5 phosphoserine phosphatase SerB compare
Psest_2557 -0.7 -1.0 Protein of unknown function (DUF2474). compare
Psest_2271 -0.7 -1.6 coenzyme PQQ biosynthesis protein PqqD compare
Psest_0678 -0.7 -2.0 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_2718 -0.7 -0.9 hypothetical protein compare
Psest_0281 -0.7 -3.9 Dynamin family. compare
Psest_4098 -0.7 -1.7 Superfamily I DNA and RNA helicases compare
Psest_2786 -0.7 -0.9 Domain of unknown function (DUF3597). compare
Psest_2038 -0.7 -3.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0601 -0.7 -1.4 hypothetical protein compare
Psest_3183 -0.7 -3.1 hypothetical protein compare
Psest_2180 -0.7 -3.3 Curlin associated repeat. compare
Psest_0692 -0.7 -1.2 rRNA methylase, putative, group 3 compare
Psest_0584 -0.7 -2.7 hypothetical protein compare
Psest_2505 -0.7 -4.8 Flagellar capping protein compare
Psest_2864 -0.7 -2.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3180 -0.7 -4.3 Exonuclease I compare
Psest_4314 -0.7 -1.9 ABC-type metal ion transport system, ATPase component compare
Psest_4111 -0.7 -4.0 hypothetical protein compare
Psest_1485 -0.7 -2.7 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_1082 -0.7 -1.9 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2671 -0.7 -1.9 Transcriptional regulator compare
Psest_1643 -0.7 -0.6 hypothetical protein compare
Psest_1823 -0.7 -4.2 Nucleoside-diphosphate-sugar epimerases compare
Psest_0187 -0.7 -2.8 Metal-dependent hydrolase compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments

For metal limitation Copper (II) sulfate pentahydrate across organisms