Experiment set16IT088 for Pseudomonas stutzeri RCH2

Compare to:

Lactate; aerobic; with copper, sample2

200 most important genes:

  gene name fitness t score description  
Psest_3944 -6.1 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0152 -5.8 -6.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_0155 -5.2 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3864 -5.1 -12.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0326 -5.0 -18.0 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3650 -4.9 -8.2 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3866 -4.8 -17.6 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2578 -4.8 -11.6 O-succinylhomoserine sulfhydrylase compare
Psest_3298 -4.8 -10.3 histidinol dehydrogenase compare
Psest_0508 -4.8 -6.6 gamma-glutamyl phosphate reductase compare
Psest_2590 -4.7 -1.7 3-isopropylmalate dehydratase, small subunit compare
Psest_0325 -4.7 -12.6 Putative threonine efflux protein compare
Psest_3648 -4.6 -3.2 anthranilate phosphoribosyltransferase compare
Psest_0279 -4.6 -7.6 methionine biosynthesis protein MetW compare
Psest_3299 -4.6 -12.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0153 -4.4 -14.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_1473 -4.4 -4.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2584 -4.2 -2.9 Phosphoribosylanthranilate isomerase compare
Psest_0280 -4.2 -14.8 homoserine O-acetyltransferase compare
Psest_3943 -4.2 -5.7 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0954 -4.0 -9.5 Fe-S oxidoreductase compare
Psest_0953 -3.9 -12.9 iron-sulfur cluster-binding protein compare
Psest_0952 -3.9 -3.7 Uncharacterized conserved protein compare
Psest_0687 -3.8 -8.3 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2591 -3.7 -4.3 3-isopropylmalate dehydratase, large subunit compare
Psest_3818 -3.6 -10.4 endoribonuclease L-PSP, putative compare
Psest_2589 -3.6 -10.5 3-isopropylmalate dehydrogenase compare
Psest_3384 -3.4 -7.4 glutamate 5-kinase compare
Psest_0313 -3.3 -2.3 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3649 -3.3 -10.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1509 -3.1 -11.1 quinolinate synthetase complex, A subunit compare
Psest_3647 -2.9 -2.0 Indole-3-glycerol phosphate synthase compare
Psest_3998 -2.9 -8.5 glutamate--cysteine ligase compare
Psest_0529 -2.8 -13.1 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0393 -2.4 -10.8 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2067 -2.4 -3.5 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2329 -2.3 -14.2 Transcriptional regulator compare
Psest_3297 -2.3 -9.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0327 -2.3 -4.1 Transcriptional regulator compare
Psest_3766 -2.2 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_1772 -2.2 -4.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1679 -2.2 -1.7 ribonuclease, Rne/Rng family compare
Psest_0718 -2.0 -4.9 nicotinate-nucleotide pyrophosphorylase compare
Psest_1295 -2.0 -3.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0062 -1.8 -2.7 tryptophan synthase, alpha subunit compare
Psest_2579 -1.8 -1.7 amidophosphoribosyltransferase compare
Psest_1686 -1.8 -5.3 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2324 -1.7 -12.0 hypothetical protein compare
Psest_2104 -1.7 -1.1 IscR-regulated protein YhgI compare
Psest_3988 -1.7 -8.3 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0466 -1.7 -3.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0334 -1.7 -3.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2088 -1.6 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_1496 -1.6 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_1037 -1.6 -1.9 acetolactate synthase, small subunit compare
Psest_3721 -1.5 -7.0 Malic enzyme compare
Psest_1082 -1.5 -3.5 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0955 -1.5 -5.7 D,L-lactate:H+ symporter (from data) compare
Psest_4103 -1.5 -2.0 AraC-type DNA-binding domain-containing proteins compare
Psest_2327 -1.5 -5.6 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_1724 -1.5 -4.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3843 -1.5 -7.5 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1999 -1.5 -1.1 pseudouridine synthase compare
Psest_2538 -1.5 -2.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0575 -1.4 -1.0 HrpA-like helicases compare
Psest_1814 -1.4 -10.4 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0193 -1.4 -2.1 conserved hypothetical protein compare
Psest_0297 -1.4 -4.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2988 -1.4 -5.4 aspartate kinase, monofunctional class compare
Psest_1837 -1.3 -5.6 Endoglucanase compare
Psest_1249 -1.3 -4.3 serine O-acetyltransferase compare
Psest_2325 -1.3 -7.6 alpha-L-glutamate ligase-related protein compare
Psest_2764 -1.3 -1.1 hypothetical protein compare
Psest_3177 -1.3 -2.0 hypothetical protein compare
Psest_0855 -1.3 -4.4 NAD-dependent aldehyde dehydrogenases compare
Psest_1012 -1.2 -2.8 Signal transduction histidine kinase compare
Psest_3174 -1.2 -8.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2809 -1.2 -2.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0951 -1.2 -5.8 FAD/FMN-containing dehydrogenases compare
Psest_3720 -1.2 -8.4 penicillin-binding protein, 1A family compare
Psest_2023 -1.2 -2.9 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_1532 -1.2 -2.4 DNA recombination-dependent growth factor C compare
Psest_2561 -1.2 -1.1 hypothetical protein compare
Psest_3767 -1.1 -2.9 tyrosine recombinase XerC compare
Psest_1813 -1.1 -6.9 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0520 -1.1 -0.9 hypothetical protein compare
Psest_0161 -1.1 -1.7 Membrane-bound metallopeptidase compare
Psest_1518 -1.1 -2.6 tRNA_Ser_CGA compare
Psest_3921 -1.1 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_4363 -1.1 -5.2 ATPases involved in chromosome partitioning compare
Psest_2626 -1.1 -2.1 Flp pilus assembly protein CpaB compare
Psest_2285 -1.1 -2.5 ATP-dependent protease La compare
Psest_2744 -1.0 -1.7 Uncharacterized conserved protein compare
Psest_1292 -1.0 -5.2 monothiol glutaredoxin, Grx4 family compare
Psest_3419 -1.0 -5.0 Predicted transcriptional regulators compare
Psest_2976 -1.0 -1.5 hypothetical protein compare
Psest_2304 -1.0 -1.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0284 -1.0 -6.8 pyridoxal phosphate enzyme, YggS family compare
Psest_2935 -1.0 -1.5 hypothetical protein compare
Psest_1417 -1.0 -1.6 hypothetical protein compare
Psest_0461 -1.0 -4.6 Glycosyltransferase involved in LPS biosynthesis compare
Psest_0601 -1.0 -2.5 hypothetical protein compare
Psest_4078 -1.0 -1.5 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1870 -1.0 -1.1 Transcriptional regulators compare
Psest_4086 -1.0 -6.2 Transcriptional regulator compare
Psest_0498 -1.0 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_0170 -1.0 -3.9 5,10-methenyltetrahydrofolate synthetase compare
Psest_3881 -1.0 -1.3 hypothetical protein compare
Psest_0296 -0.9 -5.2 glutathione synthetase, prokaryotic compare
Psest_0697 -0.9 -2.0 ribosomal protein L9 compare
Psest_0722 -0.9 -3.9 Predicted ATPase compare
Psest_0445 -0.9 -6.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2566 -0.9 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0844 -0.9 -2.0 High-affinity Fe2+/Pb2+ permease compare
Psest_4098 -0.9 -2.1 Superfamily I DNA and RNA helicases compare
Psest_4043 -0.9 -1.6 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_2331 -0.9 -5.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_0740 -0.9 -1.8 Transcriptional regulator compare
Psest_0063 -0.9 -0.9 tryptophan synthase, beta subunit compare
Psest_3351 -0.9 -3.3 peptide chain release factor 3 compare
Psest_1001 -0.9 -1.9 hypothetical protein compare
Psest_1306 -0.9 -1.1 hypothetical protein compare
Psest_3806 -0.9 -4.9 Phosphomannomutase compare
Psest_0182 -0.9 -2.6 glycine cleavage system H protein compare
Psest_3288 -0.9 -6.4 type IV-A pilus assembly ATPase PilB compare
Psest_1876 -0.9 -3.2 Predicted membrane protein compare
Psest_3913 -0.9 -1.6 hypothetical protein compare
Psest_1940 -0.9 -3.0 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_2946 -0.8 -1.5 septum site-determining protein MinD compare
Psest_2323 -0.8 -5.0 Uncharacterized protein conserved in archaea compare
Psest_1479 -0.8 -2.5 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_0515 -0.8 -1.8 rare lipoprotein A compare
Psest_3862 -0.8 -4.8 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0462 -0.8 -7.3 Lipid A core - O-antigen ligase and related enzymes compare
Psest_3745 -0.8 -1.9 Uncharacterized enzyme of heme biosynthesis compare
Psest_3480 -0.8 -1.5 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_2091 -0.8 -2.0 Molecular chaperone (small heat shock protein) compare
Psest_1695 -0.8 -2.0 Tfp pilus assembly protein PilZ compare
Psest_0999 -0.8 -1.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4406 -0.8 -1.2 hypothetical protein compare
Psest_3129 -0.8 -0.8 tyrosine recombinase XerD compare
Psest_2532 -0.8 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_4003 -0.8 -2.1 TIGR00153 family protein compare
Psest_2173 -0.8 -2.2 competence/damage-inducible protein CinA C-terminal domain compare
Psest_3979 -0.8 -2.3 Fructose-2,6-bisphosphatase compare
Psest_2580 -0.8 -2.6 Uncharacterized membrane protein, required for colicin V production compare
Psest_0987 -0.8 -2.1 Predicted periplasmic or secreted lipoprotein compare
Psest_4345 -0.8 -3.7 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1277 -0.8 -5.0 2-isopropylmalate synthase, yeast type compare
Psest_0678 -0.8 -1.5 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_2308 -0.8 -0.6 Predicted Fe-S protein compare
Psest_0609 -0.8 -1.3 hypothetical protein compare
Psest_1809 -0.8 -5.2 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_4084 -0.7 -5.5 oxaloacetate decarboxylase alpha subunit compare
Psest_4085 -0.7 -5.5 Biotin carboxylase compare
Psest_3317 -0.7 -2.7 Phosphotransferase System HPr (HPr) Family compare
Psest_4219 -0.7 -1.1 DNA polymerase I compare
Psest_4128 -0.7 -1.4 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1242 -0.7 -1.3 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3180 -0.7 -4.3 Exonuclease I compare
Psest_4364 -0.7 -2.9 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_0845 -0.7 -0.5 hypothetical protein compare
Psest_3357 -0.7 -1.9 Predicted pyrophosphatase compare
Psest_2333 -0.7 -0.7 Protein of unknown function (DUF3359). compare
Psest_3936 -0.7 -3.1 ATP-dependent protease HslVU, peptidase subunit compare
Psest_1691 -0.7 -1.6 aminodeoxychorismate lyase compare
Psest_1527 -0.7 -4.9 Na+/proline symporter compare
Psest_3927 -0.7 -2.9 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_1142 -0.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1241 -0.7 -3.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3092 -0.7 -0.9 ribonuclease III, bacterial compare
Psest_2101 -0.7 -1.3 hypothetical protein compare
Psest_3664 -0.7 -0.5 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2293 -0.7 -1.0 hypothetical protein compare
Psest_3031 -0.7 -0.5 hypothetical protein compare
Psest_1199 -0.7 -3.1 OHCU decarboxylase compare
Psest_1985 -0.7 -3.1 histidinol-phosphate aminotransferase compare
Psest_0030 -0.7 -2.6 Putative NADH-flavin reductase compare
Psest_3231 -0.7 -1.9 hypothetical protein compare
Psest_4126 -0.7 -1.9 Predicted peroxiredoxins compare
Psest_0489 -0.7 -0.5 phosphoserine phosphatase SerB compare
Psest_3865 -0.7 -1.8 Predicted integral membrane protein (DUF2269). compare
Psest_0015 -0.7 -1.4 Tetratricopeptide repeat. compare
Psest_0349 -0.7 -2.0 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_1955 -0.7 -2.8 Predicted membrane protein compare
Psest_0759 -0.7 -1.0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_4049 -0.7 -0.7 hypothetical protein compare
Psest_1642 -0.7 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_1371 -0.7 -2.1 hypothetical protein compare
Psest_1486 -0.7 -1.8 hypothetical protein compare
Psest_0843 -0.7 -3.7 hypothetical protein compare
Psest_0346 -0.6 -1.7 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_2786 -0.6 -0.8 Domain of unknown function (DUF3597). compare
Psest_1167 -0.6 -0.7 hypothetical protein compare
Psest_3145 -0.6 -1.0 hypothetical protein compare
Psest_1843 -0.6 -1.3 Uncharacterized Fe-S protein compare
Psest_3995 -0.6 -1.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0725 -0.6 -0.9 Negative regulator of beta-lactamase expression compare
Psest_3414 -0.6 -3.7 hypothetical protein compare
Psest_2507 -0.6 -4.5 Flagellin and related hook-associated proteins compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments

For metal limitation Copper (II) sulfate pentahydrate across organisms