Experiment set16IT087 for Pseudomonas stutzeri RCH2

Compare to:

Lactate; aerobic; with copper, sample1

200 most important genes:

  gene name fitness t score description  
Psest_3944 -6.2 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0152 -5.8 -8.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_0155 -4.9 -8.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3650 -4.9 -10.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2591 -4.9 -3.3 3-isopropylmalate dehydratase, large subunit compare
Psest_3864 -4.9 -16.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3298 -4.8 -12.6 histidinol dehydrogenase compare
Psest_3648 -4.8 -3.3 anthranilate phosphoribosyltransferase compare
Psest_0325 -4.7 -14.2 Putative threonine efflux protein compare
Psest_2584 -4.4 -4.2 Phosphoribosylanthranilate isomerase compare
Psest_0326 -4.3 -15.6 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_1473 -4.3 -6.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0508 -4.3 -8.6 gamma-glutamyl phosphate reductase compare
Psest_3866 -4.3 -21.0 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0153 -4.3 -16.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0952 -4.3 -4.1 Uncharacterized conserved protein compare
Psest_0280 -4.1 -16.3 homoserine O-acetyltransferase compare
Psest_3299 -3.9 -16.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2578 -3.9 -15.8 O-succinylhomoserine sulfhydrylase compare
Psest_0687 -3.8 -10.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3943 -3.6 -7.1 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0279 -3.6 -5.5 methionine biosynthesis protein MetW compare
Psest_0954 -3.5 -8.2 Fe-S oxidoreductase compare
Psest_0845 -3.4 -1.1 hypothetical protein compare
Psest_0313 -3.3 -3.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3384 -3.3 -8.3 glutamate 5-kinase compare
Psest_2589 -3.3 -10.9 3-isopropylmalate dehydrogenase compare
Psest_0953 -3.1 -8.1 iron-sulfur cluster-binding protein compare
Psest_3998 -2.9 -8.2 glutamate--cysteine ligase compare
Psest_3647 -2.9 -2.8 Indole-3-glycerol phosphate synthase compare
Psest_2088 -2.6 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_3818 -2.5 -8.9 endoribonuclease L-PSP, putative compare
Psest_3649 -2.4 -8.0 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2809 -2.3 -4.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2590 -2.3 -1.7 3-isopropylmalate dehydratase, small subunit compare
Psest_1037 -2.2 -3.4 acetolactate synthase, small subunit compare
Psest_0529 -2.2 -9.6 Putative Mg2+ and Co2+ transporter CorC compare
Psest_1509 -2.2 -9.8 quinolinate synthetase complex, A subunit compare
Psest_3129 -2.2 -1.4 tyrosine recombinase XerD compare
Psest_0327 -2.2 -4.2 Transcriptional regulator compare
Psest_1772 -2.1 -4.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3297 -2.1 -10.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_2579 -2.0 -1.4 amidophosphoribosyltransferase compare
Psest_1295 -1.9 -4.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3226 -1.9 -1.5 Predicted membrane protein compare
Psest_2329 -1.8 -11.5 Transcriptional regulator compare
Psest_0393 -1.8 -6.6 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1686 -1.7 -3.9 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0718 -1.7 -4.5 nicotinate-nucleotide pyrophosphorylase compare
Psest_2988 -1.7 -7.6 aspartate kinase, monofunctional class compare
Psest_0062 -1.7 -2.9 tryptophan synthase, alpha subunit compare
Psest_0844 -1.6 -3.1 High-affinity Fe2+/Pb2+ permease compare
Psest_2718 -1.5 -1.7 hypothetical protein compare
Psest_3531 -1.4 -2.4 Peptidase propeptide and YPEB domain. compare
Psest_1496 -1.4 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_0193 -1.4 -2.1 conserved hypothetical protein compare
Psest_1870 -1.4 -1.8 Transcriptional regulators compare
Psest_2104 -1.4 -1.8 IscR-regulated protein YhgI compare
Psest_2333 -1.4 -1.1 Protein of unknown function (DUF3359). compare
Psest_0601 -1.3 -1.8 hypothetical protein compare
Psest_4078 -1.3 -1.7 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1884 -1.3 -2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3862 -1.3 -8.8 phosphoenolpyruvate-protein phosphotransferase compare
Psest_1837 -1.3 -4.7 Endoglucanase compare
Psest_1293 -1.3 -2.2 VanZ like family. compare
Psest_3301 -1.2 -2.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_2324 -1.2 -7.2 hypothetical protein compare
Psest_2585 -1.2 -0.6 pseudouridylate synthase I compare
Psest_2067 -1.2 -1.2 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0309 -1.2 -0.9 RND family efflux transporter, MFP subunit compare
Psest_0969 -1.2 -1.8 transcription elongation factor GreA compare
Psest_0955 -1.2 -3.3 D,L-lactate:H+ symporter (from data) compare
Psest_3092 -1.1 -1.5 ribonuclease III, bacterial compare
Psest_1724 -1.1 -3.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1532 -1.1 -2.9 DNA recombination-dependent growth factor C compare
Psest_2538 -1.1 -2.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3721 -1.1 -4.7 Malic enzyme compare
Psest_4363 -1.1 -5.3 ATPases involved in chromosome partitioning compare
Psest_0170 -1.1 -4.0 5,10-methenyltetrahydrofolate synthetase compare
Psest_2325 -1.1 -5.3 alpha-L-glutamate ligase-related protein compare
Psest_1813 -1.1 -6.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1814 -1.1 -8.0 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0277 -1.1 -1.3 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1656 -1.0 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3843 -1.0 -5.8 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1663 -1.0 -3.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3174 -1.0 -7.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_1876 -1.0 -3.4 Predicted membrane protein compare
Psest_1012 -1.0 -2.8 Signal transduction histidine kinase compare
Psest_3323 -1.0 -3.7 ribonuclease, Rne/Rng family compare
Psest_2293 -1.0 -1.4 hypothetical protein compare
Psest_0461 -1.0 -5.7 Glycosyltransferase involved in LPS biosynthesis compare
Psest_1292 -1.0 -5.2 monothiol glutaredoxin, Grx4 family compare
Psest_2945 -1.0 -0.9 septum site-determining protein MinC compare
Psest_0958 -1.0 -4.4 Oligoketide cyclase/lipid transport protein compare
Psest_1700 -0.9 -2.7 Transcriptional regulator compare
Psest_1001 -0.9 -2.8 hypothetical protein compare
Psest_4343 -0.9 -1.5 Protein of unknown function (DUF3301). compare
Psest_4345 -0.9 -5.2 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2327 -0.9 -5.5 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_2756 -0.9 -0.9 hypothetical protein compare
Psest_3317 -0.9 -3.0 Phosphotransferase System HPr (HPr) Family compare
Psest_1679 -0.9 -1.2 ribonuclease, Rne/Rng family compare
Psest_0297 -0.9 -3.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2744 -0.9 -1.2 Uncharacterized conserved protein compare
Psest_0520 -0.9 -0.8 hypothetical protein compare
Psest_4003 -0.9 -3.1 TIGR00153 family protein compare
Psest_3136 -0.9 -4.3 Putative Mg2+ and Co2+ transporter CorB compare
Psest_3720 -0.9 -5.6 penicillin-binding protein, 1A family compare
Psest_0442 -0.9 -2.1 ATPases of the AAA+ class compare
Psest_1945 -0.9 -3.2 hypothetical protein compare
Psest_4126 -0.8 -2.2 Predicted peroxiredoxins compare
Psest_3231 -0.8 -1.8 hypothetical protein compare
Psest_3921 -0.8 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_2308 -0.8 -0.7 Predicted Fe-S protein compare
Psest_4316 -0.8 -2.0 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_2716 -0.8 -2.3 ABC-type multidrug transport system, ATPase component compare
Psest_1505 -0.8 -1.2 Organic radical activating enzymes compare
Psest_2523 -0.8 -2.8 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Psest_1997 -0.8 -0.9 6-phosphogluconolactonase compare
Psest_4103 -0.8 -1.2 AraC-type DNA-binding domain-containing proteins compare
Psest_3853 -0.8 -1.4 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2626 -0.8 -2.2 Flp pilus assembly protein CpaB compare
Psest_2935 -0.8 -1.4 hypothetical protein compare
Psest_3988 -0.8 -4.3 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0951 -0.8 -4.5 FAD/FMN-containing dehydrogenases compare
Psest_2136 -0.8 -2.2 Predicted homoserine dehydrogenase compare
Psest_3927 -0.8 -2.6 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_0063 -0.8 -1.3 tryptophan synthase, beta subunit compare
Psest_4219 -0.8 -1.1 DNA polymerase I compare
Psest_0296 -0.8 -4.1 glutathione synthetase, prokaryotic compare
Psest_1306 -0.7 -1.0 hypothetical protein compare
Psest_1277 -0.7 -5.0 2-isopropylmalate synthase, yeast type compare
Psest_2323 -0.7 -4.6 Uncharacterized protein conserved in archaea compare
Psest_0489 -0.7 -0.5 phosphoserine phosphatase SerB compare
Psest_0385 -0.7 -1.4 Conserved secreted protein compare
Psest_3664 -0.7 -0.5 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_1323 -0.7 -2.8 Hydroxypyruvate isomerase compare
Psest_0999 -0.7 -1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2531 -0.7 -5.0 cytochrome c oxidase accessory protein FixG compare
Psest_0609 -0.7 -1.4 hypothetical protein compare
Psest_0462 -0.7 -6.0 Lipid A core - O-antigen ligase and related enzymes compare
Psest_1417 -0.7 -1.3 hypothetical protein compare
Psest_2304 -0.7 -0.9 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_4051 -0.7 -1.0 molybdenum-pterin binding domain compare
Psest_1249 -0.7 -2.7 serine O-acetyltransferase compare
Psest_2092 -0.7 -2.4 hypothetical protein compare
Psest_0284 -0.7 -4.9 pyridoxal phosphate enzyme, YggS family compare
Psest_0831 -0.6 -0.8 hypothetical protein compare
Psest_1809 -0.6 -4.0 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_3338 -0.6 -0.4 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_4335 -0.6 -1.9 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_0414 -0.6 -2.3 biotin biosynthesis protein BioC compare
Psest_0357 -0.6 -2.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4095 -0.6 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_4252 -0.6 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3767 -0.6 -1.8 tyrosine recombinase XerC compare
Psest_2798 -0.6 -2.2 Truncated hemoglobins compare
Psest_3960 -0.6 -0.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0708 -0.6 -0.8 outer membrane assembly lipoprotein YfiO compare
Psest_4084 -0.6 -4.6 oxaloacetate decarboxylase alpha subunit compare
Psest_4098 -0.6 -1.6 Superfamily I DNA and RNA helicases compare
Psest_1230 -0.6 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0959 -0.6 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0359 -0.6 -1.2 Transcriptional regulators compare
Psest_0337 -0.6 -3.1 Regulator of cell morphogenesis and NO signaling compare
Psest_1940 -0.6 -2.4 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_1161 -0.6 -1.5 E3 Ubiquitin ligase. compare
Psest_1823 -0.6 -3.7 Nucleoside-diphosphate-sugar epimerases compare
Psest_0622 -0.6 -2.1 Disulfide bond formation protein DsbB compare
Psest_2923 -0.6 -0.9 hypothetical protein compare
Psest_0884 -0.6 -2.9 Toxin with endonuclease activity YhaV. compare
Psest_2278 -0.6 -1.5 coenzyme PQQ biosynthesis protein PqqD compare
Psest_3777 -0.6 -1.5 diguanylate cyclase (GGDEF) domain compare
Psest_1142 -0.6 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0334 -0.6 -1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4280 -0.6 -2.2 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_0910 -0.6 -3.0 hypothetical protein compare
Psest_1242 -0.6 -1.1 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2973 -0.6 -2.7 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_0533 -0.6 -2.0 Sel1 repeat. compare
Psest_3383 -0.6 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_2150 -0.6 -1.0 DNA polymerase LigD, polymerase domain compare
Psest_0615 -0.6 -4.2 RND family efflux transporter, MFP subunit compare
Psest_2561 -0.6 -0.6 hypothetical protein compare
Psest_1466 -0.6 -1.2 transcriptional regulator, Spx/MgsR family compare
Psest_3180 -0.6 -3.5 Exonuclease I compare
Psest_0719 -0.6 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_3351 -0.6 -2.4 peptide chain release factor 3 compare
Psest_0537 -0.6 -1.2 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_1041 -0.6 -4.5 Predicted membrane protein compare
Psest_4067 -0.6 -1.8 Predicted membrane protein compare
Psest_0855 -0.6 -2.2 NAD-dependent aldehyde dehydrogenases compare
Psest_0013 -0.6 -2.3 Lauroyl/myristoyl acyltransferase compare
Psest_1474 -0.5 -0.4 phosphoribosylaminoimidazole synthetase compare
Psest_1248 -0.5 -2.2 RNA methyltransferase, TrmH family, group 1 compare
Psest_3399 -0.5 -0.5 Uncharacterized protein conserved in bacteria compare
Psest_0041 -0.5 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_1428 -0.5 -1.8 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_4303 -0.5 -1.3 HEAT repeat. compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments

For metal limitation Copper (II) sulfate pentahydrate across organisms