Experiment set16IT087 for Pseudomonas stutzeri RCH2

Compare to:

Lactate; aerobic; with copper, sample1

200 most detrimental genes:

  gene name fitness t score description  
Psest_1999 +1.7 1.9 pseudouridine synthase compare
Psest_3890 +1.4 1.5 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3014 +1.3 2.2 cob(I)alamin adenosyltransferase compare
Psest_1457 +1.3 2.8 FOG: Ankyrin repeat compare
Psest_2901 +1.1 1.8 hypothetical protein compare
Psest_0209 +1.1 2.3 membrane protein AbrB duplication compare
Psest_0066 +1.1 1.7 Protein of unknown function (DUF3060). compare
Psest_3904 +1.0 1.4 hypothetical protein compare
Psest_1185 +1.0 2.3 heavy metal response regulator compare
Psest_2855 +1.0 1.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3824 +1.0 3.5 Predicted membrane protein compare
Psest_1731 +1.0 2.8 flagellar biosynthetic protein FliO compare
Psest_2018 +1.0 1.8 Uncharacterized conserved protein compare
Psest_3039 +1.0 0.9 periplasmic nitrate reductase, NapE protein compare
Psest_3395 +1.0 1.3 hypothetical protein compare
Psest_1601 +0.9 2.2 Signal transduction histidine kinase compare
Psest_1458 +0.9 2.4 Uncharacterized protein conserved in bacteria compare
Psest_1677 +0.9 1.3 Protein-tyrosine-phosphatase compare
Psest_3896 +0.9 2.2 arsenite-activated ATPase ArsA compare
Psest_2358 +0.9 2.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2907 +0.9 1.0 Protein of unknown function (DUF3618). compare
Psest_2613 +0.8 1.7 hypothetical protein compare
Psest_2723 +0.8 2.0 Uncharacterized conserved protein compare
Psest_1520 +0.8 2.8 hypothetical protein compare
Psest_1905 +0.8 2.0 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_1873 +0.8 1.9 Predicted permease, DMT superfamily compare
Psest_1115 +0.8 2.0 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0487 +0.8 2.0 Uncharacterized protein conserved in bacteria compare
Psest_2779 +0.8 3.2 Methyl-accepting chemotaxis protein compare
Psest_1089 +0.8 2.4 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_3002 +0.8 1.0 Putative translation initiation inhibitor, yjgF family compare
Psest_1468 +0.8 1.6 hypothetical protein compare
Psest_1745 +0.8 2.6 Flagellar motor component compare
Psest_1538 +0.8 2.0 Uncharacterized protein conserved in bacteria compare
Psest_3884 +0.8 0.9 Signal transduction histidine kinase compare
Psest_2975 +0.8 2.0 tRNA_Arg_CCT compare
Psest_4256 +0.8 2.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3878 +0.8 1.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3828 +0.8 0.7 zinc-binding alcohol dehydrogenase family protein compare
Psest_3191 +0.7 1.9 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_1035 +0.7 2.9 hypothetical protein compare
Psest_3013 +0.7 1.6 cobyrinic acid a,c-diamide synthase compare
Psest_2370 +0.7 2.5 Protein of unknown function (DUF1652). compare
Psest_1097 +0.7 5.3 hypothetical protein compare
Psest_2128 +0.7 1.6 Acyl-CoA dehydrogenases compare
Psest_0231 +0.7 3.3 phosphoesterase, MJ0936 family compare
Psest_1888 +0.7 0.8 Sua5/YciO/YrdC/YwlC family protein compare
Psest_2850 +0.7 1.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2138 +0.7 2.0 RND family efflux transporter, MFP subunit compare
Psest_3047 +0.7 0.9 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_2911 +0.7 0.8 Protein of unknown function (DUF2945). compare
Psest_3372 +0.7 3.8 Tfp pilus assembly protein PilW compare
Psest_2465 +0.7 2.6 hypothetical protein compare
Psest_1741 +0.7 1.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2594 +0.7 2.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1817 +0.7 2.1 hypothetical protein compare
Psest_0772 +0.7 3.5 Cytochrome c553 compare
Psest_2015 +0.7 1.9 Type II secretory pathway, component PulD compare
Psest_3060 +0.7 1.4 hypothetical protein compare
Psest_1325 +0.7 2.4 Molecular chaperone compare
Psest_3456 +0.7 1.5 RNA polymerase sigma factor, sigma-70 family compare
Psest_1660 +0.7 1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0558 +0.6 0.8 urease, beta subunit compare
Psest_1990 +0.6 1.1 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_1029 +0.6 1.9 Regulator of competence-specific genes compare
Psest_0756 +0.6 2.7 alkylhydroperoxidase AhpD family core domain compare
Psest_0133 +0.6 0.8 type VI secretion protein, VC_A0107 family compare
Psest_1631 +0.6 0.9 Uncharacterized conserved small protein compare
Psest_3478 +0.6 1.3 Cytochrome B561 compare
Psest_3756 +0.6 1.8 hypothetical protein compare
Psest_3365 +0.6 1.2 Predicted membrane protein compare
Psest_0457 +0.6 1.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1008 +0.6 0.7 hypothetical protein compare
Psest_3305 +0.6 3.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2066 +0.6 1.1 ABC-type uncharacterized transport system, permease component compare
Psest_0850 +0.6 3.4 glucokinase, proteobacterial type compare
Psest_0801 +0.6 2.7 CBS-domain-containing membrane protein compare
Psest_0857 +0.6 0.7 Membrane transporters of cations and cationic drugs compare
Psest_2725 +0.6 1.3 hypothetical protein compare
Psest_4274 +0.6 1.5 hypothetical protein compare
Psest_0662 +0.6 1.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3371 +0.6 4.2 type IV pilus modification protein PilV compare
Psest_2394 +0.6 2.3 TIGR01777 family protein compare
Psest_1643 +0.6 0.7 hypothetical protein compare
Psest_1595 +0.6 0.9 Copper chaperone compare
Psest_2559 +0.6 3.0 Cytochrome bd-type quinol oxidase, subunit 1 compare
Psest_1360 +0.6 2.6 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_1856 +0.6 1.7 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0113 +0.6 1.5 Uncharacterized protein conserved in bacteria compare
Psest_0077 +0.6 2.0 luciferase family oxidoreductase, group 1 compare
Psest_1816 +0.6 2.2 hypothetical protein compare
Psest_1907 +0.6 1.0 hypothetical protein compare
Psest_1951 +0.6 0.5 Uncharacterized protein conserved in bacteria compare
Psest_0064 +0.6 1.2 Transcriptional regulator compare
Psest_0777 +0.5 2.0 cyanate hydratase compare
Psest_1395 +0.5 1.6 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_3899 +0.5 1.7 Predicted phosphoribosyltransferases compare
Psest_1881 +0.5 2.5 Nitroreductase compare
Psest_1096 +0.5 3.1 hypothetical protein compare
Psest_2662 +0.5 2.4 hypothetical protein compare
Psest_2423 +0.5 1.9 Uncharacterized conserved protein compare
Psest_1774 +0.5 1.4 Glutathione peroxidase compare
Psest_0853 +0.5 1.7 6-phosphogluconolactonase compare
Psest_0401 +0.5 1.2 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_2017 +0.5 2.2 Predicted acyltransferase compare
Psest_2428 +0.5 1.8 hypothetical protein compare
Psest_2618 +0.5 2.3 Flp pilus assembly protein TadB compare
Psest_0039 +0.5 3.5 phosphoglucomutase, alpha-D-glucose phosphate-specific compare
Psest_2139 +0.5 3.6 Cation/multidrug efflux pump compare
Psest_0225 +0.5 1.9 Predicted permease, DMT superfamily compare
Psest_2000 +0.5 2.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2629 +0.5 1.2 Flp pilus assembly protein, pilin Flp compare
Psest_1179 +0.5 1.0 2-hydroxy-3-oxopropionate reductase compare
Psest_3248 +0.5 2.6 Glucose/sorbosone dehydrogenases compare
Psest_1279 +0.5 1.3 hypothetical protein compare
Psest_3204 +0.5 1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3484 +0.5 2.3 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3236 +0.5 1.2 hypothetical protein compare
Psest_4301 +0.5 2.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0749 +0.5 2.3 Transcriptional regulator compare
Psest_3216 +0.5 4.7 diguanylate cyclase (GGDEF) domain compare
Psest_3391 +0.5 0.8 Uncharacterized protein conserved in bacteria compare
Psest_3306 +0.5 2.6 conserved hypothetical integral membrane protein compare
Psest_1099 +0.5 3.5 Type I restriction-modification system methyltransferase subunit compare
Psest_1098 +0.5 3.0 Restriction endonuclease S subunits compare
Psest_0846 +0.5 0.7 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2105 +0.5 2.8 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain compare
Psest_2140 +0.5 3.7 Cation/multidrug efflux pump compare
Psest_0139 +0.5 1.9 ABC-type histidine transport system, ATPase component compare
Psest_4258 +0.5 1.5 ABC-type uncharacterized transport system, auxiliary component compare
Psest_0779 +0.5 1.8 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
Psest_0118 +0.5 2.2 Predicted membrane protein compare
Psest_3007 +0.5 2.4 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase compare
Psest_2179 +0.5 2.9 DNA ligase D compare
Psest_3072 +0.5 2.1 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit compare
Psest_3467 +0.5 2.3 PAP2 (acid phosphatase) superfamily protein compare
Psest_0054 +0.5 1.2 hypothetical protein compare
Psest_0134 +0.5 2.0 type VI secretion-associated protein, VC_A0119 family compare
Psest_0119 +0.5 0.9 hypothetical protein compare
Psest_2846 +0.5 1.2 monovalent cation/proton antiporter, MnhG/PhaG subunit compare
Psest_1100 +0.5 3.5 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases compare
Psest_3511 +0.5 2.5 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Psest_0655 +0.5 0.9 Chemotaxis signal transduction protein compare
Psest_3707 +0.5 1.1 Transcriptional regulator compare
Psest_0743 +0.5 2.5 adenosine deaminase compare
Psest_1359 +0.5 1.8 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_2545 +0.5 1.0 recombination protein RecR compare
Psest_2918 +0.5 2.0 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) compare
Psest_2903 +0.5 1.9 Site-specific recombinase XerD compare
Psest_3217 +0.5 4.3 PAS domain S-box compare
Psest_1053 +0.4 1.1 hypothetical protein compare
Psest_4107 +0.4 2.1 formate dehydrogenase accessory protein FdhE compare
Psest_3883 +0.4 2.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1182 +0.4 1.9 Transcriptional regulator compare
Psest_1723 +0.4 2.2 flagellar export protein FliJ compare
Psest_1783 +0.4 1.2 Predicted transporter component compare
Psest_2145 +0.4 2.0 RND family efflux transporter, MFP subunit compare
Psest_1556 +0.4 1.7 hypothetical protein compare
Psest_1864 +0.4 1.6 diguanylate cyclase (GGDEF) domain compare
Psest_1540 +0.4 0.7 biotin-dependent carboxylase uncharacterized domain compare
Psest_1518 +0.4 1.0 tRNA_Ser_CGA compare
Psest_0921 +0.4 2.2 AraC-type DNA-binding domain-containing proteins compare
Psest_3529 +0.4 2.8 Uncharacterized protein conserved in bacteria compare
Psest_1916 +0.4 1.8 Uncharacterized protein conserved in bacteria compare
Psest_3955 +0.4 1.5 Uncharacterized protein conserved in bacteria compare
Psest_0503 +0.4 0.9 Acyl dehydratase compare
Psest_0027 +0.4 2.5 NADPH:quinone reductase and related Zn-dependent oxidoreductases compare
Psest_0717 +0.4 3.7 Protein of unknown function (DUF1631). compare
Psest_2117 +0.4 3.0 TRAP transporter solute receptor, TAXI family compare
Psest_2757 +0.4 0.6 hypothetical protein compare
Psest_2120 +0.4 1.0 Transcriptional regulator compare
Psest_3086 +0.4 2.4 hypothetical protein compare
Psest_3017 +0.4 1.8 Predicted phosphohydrolases compare
Psest_0046 +0.4 1.9 Uncharacterized protein conserved in bacteria compare
Psest_0057 +0.4 1.2 Predicted transcriptional regulators compare
Psest_0497 +0.4 2.5 Flagellar motor protein compare
Psest_1644 +0.4 1.9 Erythromycin esterase homolog compare
Psest_1924 +0.4 3.7 adhesin-associated MmpL efflux pump (from data) compare
Psest_2098 +0.4 2.1 Predicted ATPase/kinase involved in NAD metabolism compare
Psest_3701 +0.4 1.2 3-oxoacyl-(acyl-carrier-protein) synthase compare
Psest_1551 +0.4 0.6 Integral membrane protein, interacts with FtsH compare
Psest_0510 +0.4 1.4 iojap-like ribosome-associated protein compare
Psest_0095 +0.4 1.3 phosphonate C-P lyase system protein PhnH compare
Psest_2773 +0.4 2.2 glycerol kinase compare
Psest_3043 +0.4 2.2 periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family compare
Psest_0208 +0.4 2.6 Uncharacterized protein conserved in bacteria compare
Psest_4336 +0.4 2.6 Uncharacterized iron-regulated membrane protein compare
Psest_1069 +0.4 2.1 Protease II compare
Psest_2753 +0.4 1.8 Uncharacterized protein conserved in bacteria compare
Psest_3199 +0.4 1.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_1602 +0.4 0.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3196 +0.4 2.2 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes compare
Psest_1349 +0.4 0.9 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1187 +0.4 2.5 exodeoxyribonuclease III compare
Psest_3505 +0.4 2.3 Superfamily II DNA and RNA helicases compare
Psest_3307 +0.4 2.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3473 +0.4 1.8 hypothetical protein compare
Psest_2766 +0.4 0.6 hypothetical protein compare
Psest_2623 +0.4 2.8 Flp pilus assembly protein TadG compare
Psest_0020 +0.4 1.3 K+ transport systems, NAD-binding component compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments

For metal limitation Copper (II) sulfate pentahydrate across organisms