Experiment set16IT086 for Pseudomonas stutzeri RCH2

Compare to:

Lactate; aerobic; sample3

200 most important genes:

  gene name fitness t score description  
Psest_3944 -6.2 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0152 -6.0 -5.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_0279 -6.0 -5.8 methionine biosynthesis protein MetW compare
Psest_0155 -5.5 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3650 -5.0 -9.0 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3298 -4.7 -12.4 histidinol dehydrogenase compare
Psest_0153 -4.7 -15.4 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0325 -4.5 -14.2 Putative threonine efflux protein compare
Psest_0280 -4.4 -15.8 homoserine O-acetyltransferase compare
Psest_3866 -4.4 -19.8 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3943 -4.4 -5.9 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0326 -4.3 -16.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0508 -4.3 -7.7 gamma-glutamyl phosphate reductase compare
Psest_3864 -4.3 -17.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3648 -4.2 -7.0 anthranilate phosphoribosyltransferase compare
Psest_0687 -4.1 -8.6 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2584 -4.0 -4.8 Phosphoribosylanthranilate isomerase compare
Psest_3384 -4.0 -6.0 glutamate 5-kinase compare
Psest_2591 -3.9 -4.5 3-isopropylmalate dehydratase, large subunit compare
Psest_2578 -3.8 -13.5 O-succinylhomoserine sulfhydrylase compare
Psest_0954 -3.7 -11.8 Fe-S oxidoreductase compare
Psest_3299 -3.6 -12.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3998 -3.5 -6.7 glutamate--cysteine ligase compare
Psest_1473 -3.4 -6.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2589 -3.4 -10.4 3-isopropylmalate dehydrogenase compare
Psest_0953 -3.2 -10.6 iron-sulfur cluster-binding protein compare
Psest_2590 -3.2 -1.9 3-isopropylmalate dehydratase, small subunit compare
Psest_0313 -3.1 -4.2 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3647 -3.1 -2.1 Indole-3-glycerol phosphate synthase compare
Psest_0952 -3.1 -4.0 Uncharacterized conserved protein compare
Psest_3818 -3.0 -11.3 endoribonuclease L-PSP, putative compare
Psest_3649 -2.8 -11.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1509 -2.8 -12.0 quinolinate synthetase complex, A subunit compare
Psest_1496 -2.6 -1.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_0393 -2.5 -10.1 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1772 -2.5 -5.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3297 -2.4 -11.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0529 -2.4 -10.3 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0327 -2.3 -4.0 Transcriptional regulator compare
Psest_2067 -2.2 -2.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2329 -2.0 -13.5 Transcriptional regulator compare
Psest_2579 -1.9 -1.3 amidophosphoribosyltransferase compare
Psest_0062 -1.9 -2.8 tryptophan synthase, alpha subunit compare
Psest_1295 -1.9 -4.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2088 -1.9 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_1037 -1.8 -3.4 acetolactate synthase, small subunit compare
Psest_1686 -1.8 -5.8 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2988 -1.7 -8.0 aspartate kinase, monofunctional class compare
Psest_0844 -1.7 -4.8 High-affinity Fe2+/Pb2+ permease compare
Psest_1012 -1.6 -3.1 Signal transduction histidine kinase compare
Psest_2104 -1.6 -1.5 IscR-regulated protein YhgI compare
Psest_2293 -1.6 -2.0 hypothetical protein compare
Psest_0193 -1.5 -1.9 conserved hypothetical protein compare
Psest_1814 -1.5 -11.0 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2023 -1.5 -2.9 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3962 -1.5 -1.9 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_4098 -1.4 -3.1 Superfamily I DNA and RNA helicases compare
Psest_2872 -1.4 -1.5 protein RecA compare
Psest_2325 -1.4 -7.3 alpha-L-glutamate ligase-related protein compare
Psest_1532 -1.4 -3.2 DNA recombination-dependent growth factor C compare
Psest_4003 -1.3 -4.3 TIGR00153 family protein compare
Psest_3766 -1.3 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_0999 -1.3 -2.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2327 -1.3 -6.5 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_0609 -1.3 -2.4 hypothetical protein compare
Psest_0097 -1.3 -2.4 phosphonates metabolism transcriptional regulator PhnF compare
Psest_2308 -1.3 -1.2 Predicted Fe-S protein compare
Psest_1167 -1.2 -1.2 hypothetical protein compare
Psest_1870 -1.2 -1.6 Transcriptional regulators compare
Psest_0845 -1.2 -0.8 hypothetical protein compare
Psest_2324 -1.2 -7.5 hypothetical protein compare
Psest_1724 -1.2 -4.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1249 -1.2 -4.2 serine O-acetyltransferase compare
Psest_3843 -1.2 -6.0 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3301 -1.2 -2.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_0632 -1.2 -3.3 hypothetical protein compare
Psest_0708 -1.2 -1.6 outer membrane assembly lipoprotein YfiO compare
Psest_3174 -1.1 -8.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_1417 -1.1 -2.0 hypothetical protein compare
Psest_2323 -1.1 -7.2 Uncharacterized protein conserved in archaea compare
Psest_2935 -1.1 -2.7 hypothetical protein compare
Psest_0722 -1.1 -4.6 Predicted ATPase compare
Psest_0182 -1.1 -4.8 glycine cleavage system H protein compare
Psest_0955 -1.1 -4.3 D,L-lactate:H+ symporter (from data) compare
Psest_1837 -1.1 -3.7 Endoglucanase compare
Psest_2946 -1.1 -1.8 septum site-determining protein MinD compare
Psest_2626 -1.1 -3.5 Flp pilus assembly protein CpaB compare
Psest_0718 -1.1 -2.4 nicotinate-nucleotide pyrophosphorylase compare
Psest_1813 -1.1 -5.8 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3881 -1.0 -1.4 hypothetical protein compare
Psest_3045 -1.0 -1.9 Cold shock proteins compare
Psest_1679 -1.0 -1.3 ribonuclease, Rne/Rng family compare
Psest_1782 -1.0 -2.0 Predicted transcriptional regulators compare
Psest_1518 -1.0 -2.6 tRNA_Ser_CGA compare
Psest_0601 -1.0 -2.6 hypothetical protein compare
Psest_2538 -1.0 -1.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3921 -1.0 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_4363 -1.0 -5.1 ATPases involved in chromosome partitioning compare
Psest_4221 -1.0 -3.7 homoserine kinase, Neisseria type compare
Psest_0297 -1.0 -3.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2744 -1.0 -1.5 Uncharacterized conserved protein compare
Psest_0170 -1.0 -3.7 5,10-methenyltetrahydrofolate synthetase compare
Psest_0855 -1.0 -3.8 NAD-dependent aldehyde dehydrogenases compare
Psest_0063 -1.0 -0.7 tryptophan synthase, beta subunit compare
Psest_3988 -1.0 -4.7 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_1919 -0.9 -2.5 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_0737 -0.9 -0.9 Cu(I)-responsive transcriptional regulator compare
Psest_3721 -0.9 -5.7 Malic enzyme compare
Psest_2505 -0.9 -6.5 Flagellar capping protein compare
Psest_2090 -0.9 -2.5 Protein of unknown function (DUF2970). compare
Psest_2786 -0.9 -1.1 Domain of unknown function (DUF3597). compare
Psest_0218 -0.9 -2.7 Acyl-CoA hydrolase compare
Psest_2798 -0.9 -2.3 Truncated hemoglobins compare
Psest_3565 -0.9 -1.4 hypothetical protein compare
Psest_1277 -0.9 -5.7 2-isopropylmalate synthase, yeast type compare
Psest_0442 -0.9 -1.9 ATPases of the AAA+ class compare
Psest_1292 -0.9 -4.5 monothiol glutaredoxin, Grx4 family compare
Psest_0951 -0.8 -4.8 FAD/FMN-containing dehydrogenases compare
Psest_2253 -0.8 -1.8 small redox-active disulfide protein 2 compare
Psest_3177 -0.8 -1.5 hypothetical protein compare
Psest_3767 -0.8 -2.2 tyrosine recombinase XerC compare
Psest_3862 -0.8 -5.2 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2809 -0.8 -1.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3080 -0.8 -1.8 AraC-type DNA-binding domain-containing proteins compare
Psest_0498 -0.8 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_0161 -0.8 -1.5 Membrane-bound metallopeptidase compare
Psest_3678 -0.8 -2.3 acyl-phosphate glycerol 3-phosphate acyltransferase compare
Psest_0958 -0.8 -3.6 Oligoketide cyclase/lipid transport protein compare
Psest_0466 -0.8 -2.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0445 -0.8 -5.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3720 -0.8 -4.8 penicillin-binding protein, 1A family compare
Psest_0919 -0.8 -2.1 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0462 -0.8 -6.9 Lipid A core - O-antigen ligase and related enzymes compare
Psest_3178 -0.8 -1.9 formyltetrahydrofolate deformylase compare
Psest_2646 -0.8 -1.5 SOS regulatory protein LexA compare
Psest_0015 -0.8 -1.8 Tetratricopeptide repeat. compare
Psest_1506 -0.8 -2.7 queuosine biosynthesis protein QueC compare
Psest_3973 -0.7 -1.1 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_1031 -0.7 -4.3 Uncharacterized protein conserved in bacteria compare
Psest_0296 -0.7 -3.5 glutathione synthetase, prokaryotic compare
Psest_1142 -0.7 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3383 -0.7 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_0284 -0.7 -5.0 pyridoxal phosphate enzyme, YggS family compare
Psest_4345 -0.7 -3.1 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2566 -0.7 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_3288 -0.7 -5.1 type IV-A pilus assembly ATPase PilB compare
Psest_3180 -0.7 -4.6 Exonuclease I compare
Psest_0489 -0.7 -0.5 phosphoserine phosphatase SerB compare
Psest_2667 -0.7 -1.8 Uncharacterized protein involved in propionate catabolism compare
Psest_1920 -0.7 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_0584 -0.7 -3.0 hypothetical protein compare
Psest_2266 -0.7 -2.5 hypothetical protein compare
Psest_1876 -0.7 -2.7 Predicted membrane protein compare
Psest_3136 -0.7 -3.2 Putative Mg2+ and Co2+ transporter CorB compare
Psest_2637 -0.7 -1.0 putative methyltransferase, YaeB/AF_0241 family compare
Psest_3226 -0.7 -0.8 Predicted membrane protein compare
Psest_4314 -0.7 -1.8 ABC-type metal ion transport system, ATPase component compare
Psest_3351 -0.7 -2.8 peptide chain release factor 3 compare
Psest_0461 -0.7 -2.8 Glycosyltransferase involved in LPS biosynthesis compare
Psest_3806 -0.7 -3.8 Phosphomannomutase compare
Psest_1227 -0.7 -1.6 Predicted SAM-dependent methyltransferase compare
Psest_1663 -0.7 -1.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2810 -0.7 -1.8 5'/3'-nucleotidase SurE compare
Psest_3129 -0.7 -0.7 tyrosine recombinase XerD compare
Psest_2523 -0.7 -2.7 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Psest_1235 -0.7 -4.4 Leucyl aminopeptidase compare
Psest_1660 -0.7 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0613 -0.7 -3.8 hypothetical protein compare
Psest_1809 -0.7 -3.9 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_4310 -0.7 -1.2 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2331 -0.7 -4.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_1879 -0.7 -1.3 Trk-type K+ transport systems, membrane components compare
Psest_2424 -0.7 -1.2 K+ transport systems, NAD-binding component compare
Psest_4064 -0.6 -1.3 Lactate dehydrogenase and related dehydrogenases compare
Psest_0869 -0.6 -1.5 Acetyltransferase (isoleucine patch superfamily) compare
Psest_4316 -0.6 -2.2 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_4086 -0.6 -3.6 Transcriptional regulator compare
Psest_3869 -0.6 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_2225 -0.6 -2.6 Diacylglycerol kinase compare
Psest_0294 -0.6 -2.3 Putative transcriptional regulator compare
Psest_0707 -0.6 -2.9 MYND finger. compare
Psest_3433 -0.6 -3.4 ATP-binding cassette protein, ChvD family compare
Psest_4085 -0.6 -4.1 Biotin carboxylase compare
Psest_2719 -0.6 -0.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0922 -0.6 -1.1 alkylhydroperoxidase AhpD family core domain compare
Psest_2976 -0.6 -1.0 hypothetical protein compare
Psest_3438 -0.6 -3.3 Glutamate dehydrogenase/leucine dehydrogenase compare
Psest_3063 -0.6 -2.5 hypothetical protein compare
Psest_3419 -0.6 -3.2 Predicted transcriptional regulators compare
Psest_1562 -0.6 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_1659 -0.6 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3092 -0.6 -0.9 ribonuclease III, bacterial compare
Psest_2507 -0.6 -4.3 Flagellin and related hook-associated proteins compare
Psest_2136 -0.6 -1.7 Predicted homoserine dehydrogenase compare
Psest_1101 -0.6 -2.8 Uncharacterized conserved protein compare
Psest_3927 -0.6 -2.3 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_0400 -0.6 -2.7 Geranylgeranyl pyrophosphate synthase compare
Psest_0998 -0.6 -1.1 poly(A) polymerase compare
Psest_4051 -0.6 -1.4 molybdenum-pterin binding domain compare
Psest_0334 -0.6 -1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments