Experiment set16IT086 for Pseudomonas stutzeri RCH2

Compare to:

Lactate; aerobic; sample3

200 most detrimental genes:

  gene name fitness t score description  
Psest_3014 +2.1 3.1 cob(I)alamin adenosyltransferase compare
Psest_0867 +1.6 2.4 hypothetical protein compare
Psest_3904 +1.5 2.6 hypothetical protein compare
Psest_1089 +1.3 3.2 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_1999 +1.3 1.5 pseudouridine synthase compare
Psest_0660 +1.3 2.4 Methyl-accepting chemotaxis protein compare
Psest_3850 +1.2 1.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1185 +1.1 2.4 heavy metal response regulator compare
Psest_2907 +1.0 1.3 Protein of unknown function (DUF3618). compare
Psest_3890 +1.0 1.6 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0260 +1.0 1.1 Cell division protein compare
Psest_2757 +1.0 1.9 hypothetical protein compare
Psest_3937 +0.9 1.3 ATP-dependent protease HslVU, ATPase subunit compare
Psest_1824 +0.9 2.4 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1360 +0.9 2.8 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_3478 +0.9 1.1 Cytochrome B561 compare
Psest_3496 +0.8 1.9 Predicted metal-binding protein compare
Psest_3697 +0.8 1.4 Outer membrane lipoprotein carrier protein LolA. compare
Psest_2581 +0.8 2.3 Uncharacterized protein conserved in bacteria compare
Psest_3693 +0.8 1.9 Glycosyltransferases involved in cell wall biogenesis compare
Psest_3191 +0.8 2.3 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_4273 +0.8 4.3 Lysophospholipase compare
Psest_2015 +0.8 2.5 Type II secretory pathway, component PulD compare
Psest_0368 +0.8 2.8 Transcriptional regulator compare
Psest_3910 +0.8 1.0 Uncharacterized protein conserved in bacteria compare
Psest_3476 +0.8 1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4103 +0.8 1.6 AraC-type DNA-binding domain-containing proteins compare
Psest_3064 +0.8 1.5 hypothetical protein compare
Psest_1457 +0.8 1.4 FOG: Ankyrin repeat compare
Psest_0501 +0.8 3.1 Predicted nucleoside-diphosphate-sugar epimerases compare
Psest_0066 +0.8 1.4 Protein of unknown function (DUF3060). compare
Psest_0067 +0.8 1.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_0231 +0.8 3.9 phosphoesterase, MJ0936 family compare
Psest_0655 +0.8 1.6 Chemotaxis signal transduction protein compare
Psest_2359 +0.7 3.3 Predicted permeases compare
Psest_1008 +0.7 0.8 hypothetical protein compare
Psest_3077 +0.7 1.8 Protein of unknown function (DUF3203). compare
Psest_1873 +0.7 2.2 Predicted permease, DMT superfamily compare
Psest_3784 +0.7 2.0 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_4370 +0.7 1.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1359 +0.7 3.6 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_3828 +0.7 0.7 zinc-binding alcohol dehydrogenase family protein compare
Psest_1910 +0.7 2.6 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_0139 +0.7 2.6 ABC-type histidine transport system, ATPase component compare
Psest_3216 +0.7 6.6 diguanylate cyclase (GGDEF) domain compare
Psest_0511 +0.7 1.1 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0401 +0.7 1.5 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_1065 +0.7 1.8 hypothetical protein compare
Psest_0756 +0.7 3.7 alkylhydroperoxidase AhpD family core domain compare
Psest_2025 +0.7 0.8 cold shock domain protein CspD compare
Psest_2594 +0.7 2.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1520 +0.7 1.6 hypothetical protein compare
Psest_1540 +0.7 0.7 biotin-dependent carboxylase uncharacterized domain compare
Psest_1986 +0.7 1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_1468 +0.7 2.5 hypothetical protein compare
Psest_3002 +0.7 1.4 Putative translation initiation inhibitor, yjgF family compare
Psest_1601 +0.7 1.6 Signal transduction histidine kinase compare
Psest_3372 +0.7 4.7 Tfp pilus assembly protein PilW compare
Psest_0181 +0.6 3.5 glycine cleavage system T protein compare
Psest_2428 +0.6 2.5 hypothetical protein compare
Psest_4315 +0.6 1.8 ABC-type metal ion transport system, permease component compare
Psest_1325 +0.6 2.4 Molecular chaperone compare
Psest_0702 +0.6 2.5 Methyl-accepting chemotaxis protein compare
Psest_3270 +0.6 1.3 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0717 +0.6 5.2 Protein of unknown function (DUF1631). compare
Psest_4126 +0.6 1.8 Predicted peroxiredoxins compare
Psest_2022 +0.6 1.9 ADP-ribose pyrophosphatase compare
Psest_1632 +0.6 1.6 Predicted permeases compare
Psest_0790 +0.6 1.4 Uncharacterized protein conserved in bacteria compare
Psest_2766 +0.6 0.9 hypothetical protein compare
Psest_1863 +0.6 1.7 hypothetical protein compare
Psest_3217 +0.6 5.7 PAS domain S-box compare
Psest_1909 +0.6 2.4 Phosphohistidine phosphatase SixA compare
Psest_2855 +0.6 0.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1215 +0.6 1.2 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_2066 +0.6 1.1 ABC-type uncharacterized transport system, permease component compare
Psest_0225 +0.6 1.9 Predicted permease, DMT superfamily compare
Psest_2999 +0.6 2.7 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_0087 +0.6 2.5 hypothetical protein compare
Psest_1096 +0.6 3.2 hypothetical protein compare
Psest_3878 +0.6 1.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0141 +0.6 2.2 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_1514 +0.6 1.6 Glycine cleavage system regulatory protein compare
Psest_0457 +0.6 1.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0503 +0.6 1.1 Acyl dehydratase compare
Psest_3338 +0.6 0.6 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3148 +0.6 0.7 hypothetical protein compare
Psest_1029 +0.5 1.7 Regulator of competence-specific genes compare
Psest_2126 +0.5 1.6 Transcriptional regulators compare
Psest_1183 +0.5 1.4 hydroxyisourate hydrolase compare
Psest_2383 +0.5 3.4 Predicted transcriptional regulators compare
Psest_0355 +0.5 0.8 Glycine cleavage system regulatory protein compare
Psest_3832 +0.5 1.2 hypothetical protein compare
Psest_1721 +0.5 2.1 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1176 +0.5 1.4 Urea transporter compare
Psest_3100 +0.5 2.3 RNA polymerase sigma factor RpoE compare
Psest_1923 +0.5 1.6 adhesin-associated BNR repeat protein (from data) compare
Psest_2975 +0.5 1.2 tRNA_Arg_CCT compare
Psest_0243 +0.5 0.6 hypothetical protein compare
Psest_3371 +0.5 3.5 type IV pilus modification protein PilV compare
Psest_1279 +0.5 1.5 hypothetical protein compare
Psest_2260 +0.5 4.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0376 +0.5 1.4 glucarate dehydratase compare
Psest_0309 +0.5 0.5 RND family efflux transporter, MFP subunit compare
Psest_1907 +0.5 0.9 hypothetical protein compare
Psest_1892 +0.5 3.0 6-phosphogluconate dehydratase compare
Psest_3521 +0.5 1.6 H+/gluconate symporter and related permeases compare
Psest_1443 +0.5 2.7 Uncharacterized protein involved in formation of curli polymers compare
Psest_0487 +0.5 1.8 Uncharacterized protein conserved in bacteria compare
Psest_3373 +0.5 2.2 Tfp pilus assembly protein PilX compare
Psest_1881 +0.5 2.0 Nitroreductase compare
Psest_0781 +0.5 2.7 phenylalanine-4-hydroxylase, monomeric form compare
Psest_3700 +0.5 0.8 hypothetical protein compare
Psest_1099 +0.5 3.9 Type I restriction-modification system methyltransferase subunit compare
Psest_0857 +0.5 0.9 Membrane transporters of cations and cationic drugs compare
Psest_1017 +0.5 2.5 Protein of unknown function (DUF3426). compare
Psest_1924 +0.5 4.1 adhesin-associated MmpL efflux pump (from data) compare
Psest_1077 +0.5 2.6 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) (from data) compare
Psest_4108 +0.5 2.0 seryl-tRNA(sec) selenium transferase compare
Psest_0316 +0.5 1.0 Cytochrome c556 compare
Psest_0020 +0.5 1.4 K+ transport systems, NAD-binding component compare
Psest_4292 +0.5 2.3 Predicted enzyme related to lactoylglutathione lyase compare
Psest_0209 +0.5 1.1 membrane protein AbrB duplication compare
Psest_0046 +0.5 2.7 Uncharacterized protein conserved in bacteria compare
Psest_3853 +0.5 0.9 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_3803 +0.5 0.7 DNA repair protein radc compare
Psest_2360 +0.5 1.2 Uncharacterized protein, putative amidase compare
Psest_1226 +0.5 1.0 hypothetical protein compare
Psest_3484 +0.5 2.0 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_2853 +0.5 1.6 hypothetical protein compare
Psest_0506 +0.5 1.1 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Psest_2138 +0.5 1.2 RND family efflux transporter, MFP subunit compare
Psest_2096 +0.5 1.3 Domain of unknown function (DUF1883). compare
Psest_2773 +0.5 2.4 glycerol kinase compare
Psest_2232 +0.5 3.5 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2764 +0.5 0.7 hypothetical protein compare
Psest_3990 +0.5 2.5 PAP2 superfamily. compare
Psest_0809 +0.5 2.1 Cytochrome c, mono- and diheme variants compare
Psest_1097 +0.5 3.6 hypothetical protein compare
Psest_2779 +0.5 1.5 Methyl-accepting chemotaxis protein compare
Psest_1723 +0.5 1.9 flagellar export protein FliJ compare
Psest_0872 +0.4 0.7 Helix-turn-helix. compare
Psest_3788 +0.4 1.9 xanthine phosphoribosyltransferase compare
Psest_1560 +0.4 1.9 hypothetical protein compare
Psest_1882 +0.4 2.1 Signal transduction histidine kinase compare
Psest_0417 +0.4 1.1 Acyl-CoA dehydrogenases compare
Psest_3883 +0.4 2.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1635 +0.4 4.0 Signal transduction histidine kinase compare
Psest_2051 +0.4 2.3 Ribonuclease D compare
Psest_1100 +0.4 3.4 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases compare
Psest_0728 +0.4 2.9 hydrolase, TatD family compare
Psest_3793 +0.4 2.1 D-alanine dehydrogenase (EC 1.4.99.-) (from data) compare
Psest_2139 +0.4 3.0 Cation/multidrug efflux pump compare
Psest_4145 +0.4 1.3 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_3902 +0.4 1.7 hypothetical protein compare
Psest_0547 +0.4 1.5 Urease accessory protein UreF compare
Psest_2160 +0.4 2.7 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes compare
Psest_3206 +0.4 2.0 Uncharacterized protein conserved in bacteria compare
Psest_0538 +0.4 4.2 Signal transduction histidine kinase compare
Psest_0891 +0.4 1.6 Uncharacterized protein conserved in bacteria compare
Psest_1390 +0.4 1.1 Uncharacterized ABC-type transport system, permease component compare
Psest_2140 +0.4 2.8 Cation/multidrug efflux pump compare
Psest_2789 +0.4 2.2 Ammonia permease compare
Psest_0662 +0.4 0.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1725 +0.4 3.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2000 +0.4 2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4338 +0.4 2.1 Fe2+-dicitrate sensor, membrane component compare
Psest_3048 +0.4 1.0 hypothetical protein compare
Psest_0822 +0.4 1.1 Transcriptional regulators compare
Psest_0661 +0.4 2.7 PAS domain S-box compare
Psest_0795 +0.4 1.4 ABC-type multidrug transport system, ATPase component compare
Psest_1395 +0.4 1.6 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_2105 +0.4 2.2 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain compare
Psest_0497 +0.4 2.1 Flagellar motor protein compare
Psest_1901 +0.4 1.6 hypothetical protein compare
Psest_0779 +0.4 1.5 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
Psest_2884 +0.4 1.6 HAD-superfamily phosphatase, subfamily IIIC/FkbH-like domain compare
Psest_0559 +0.4 2.2 Sortase and related acyltransferases compare
Psest_3128 +0.4 1.2 Protein-disulfide isomerase compare
Psest_3189 +0.4 1.2 hypothetical protein compare
Psest_1315 +0.4 1.0 hypothetical protein compare
Psest_2148 +0.4 1.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1220 +0.4 2.0 hypothetical protein compare
Psest_1179 +0.4 0.8 2-hydroxy-3-oxopropionate reductase compare
Psest_2117 +0.4 2.5 TRAP transporter solute receptor, TAXI family compare
Psest_0365 +0.4 1.9 NAD dependent epimerase/dehydratase family. compare
Psest_1974 +0.4 1.0 integration host factor, alpha subunit compare
Psest_2445 +0.4 2.2 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
Psest_3334 +0.4 1.4 Integral membrane protein CcmA involved in cell shape determination compare
Psest_3955 +0.4 1.2 Uncharacterized protein conserved in bacteria compare
Psest_3473 +0.4 1.6 hypothetical protein compare
Psest_0654 +0.4 2.3 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3060 +0.4 1.6 hypothetical protein compare
Psest_2099 +0.4 2.0 nicotinamide mononucleotide transporter PnuC compare
Psest_1719 +0.4 1.7 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_2850 +0.4 0.5 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2429 +0.4 1.6 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_3359 +0.4 1.7 hypothetical protein compare
Psest_0482 +0.4 1.3 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_2918 +0.4 1.9 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments