Experiment set16IT085 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

MoYLS4 with Molybdate 100uM and Tungstate 0.5mM

Group: stress
Media: MoYLS4 + Sodium molybdate (100 ) + Sodium tungstate dihydrate (0.5 mM), pH=7.2
Culturing: DvH_JW710, 24 deep-well microplate, Anaerobic, at 30 (C), shaken=0 rpm
By: Valentine on 11/2/2017
Media components: 1 g/L Yeast Extract, 30 mM Sodium sulfate, 60 mM Sodium D,L-Lactate, 20 mM Ammonium chloride, 30 mM Tris hydrochloride, 0.12 mM EDTA, 1 mM Sodium sulfide nonahydrate, 8 mM Magnesium chloride hexahydrate, 0.6 mM Calcium chloride, 2 mM Potassium phosphate dibasic, 60 uM Iron (II) chloride tetrahydrate, 15 uM Manganese (II) chloride tetrahydrate, 7.8 uM Cobalt chloride hexahydrate, 9 uM Zinc chloride, 1.26 uM Sodium molybdate, 1.92 uM Boric Acid, 2.28 uM Nickel (II) sulfate hexahydrate, 0.06 uM copper (II) chloride dihydrate, 0.21 uM Sodium selenite pentahydrate, 0.144 uM Sodium tungstate dihydrate, Thauer's vitamin mix (0.01 mg/L Pyridoxine HCl, 0.005 mg/L 4-Aminobenzoic acid, 0.005 mg/L Lipoic acid, 0.005 mg/L Nicotinic Acid, 0.005 mg/L Riboflavin, 0.005 mg/L Thiamine HCl, 0.005 mg/L calcium pantothenate, 0.002 mg/L biotin, 0.002 mg/L Folic Acid, 0.0001 mg/L Cyanocobalamin, 0.2 mg/L Choline chloride)

Specific Phenotypes

For 14 genes in this experiment

For stress Sodium molybdate in Desulfovibrio vulgaris Hildenborough JW710

For stress Sodium molybdate across organisms

SEED Subsystems

Subsystem #Specific
Hfl operon 2
Multidrug Resistance Efflux Pumps 2
Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) 2
Protein chaperones 1
Transport of Zinc 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
incomplete reductive TCA cycle 7 6 1
TCA cycle V (2-oxoglutarate synthase) 9 7 1
TCA cycle VI (Helicobacter) 9 7 1
TCA cycle VII (acetate-producers) 9 6 1
reductive TCA cycle I 11 9 1
reductive TCA cycle II 12 7 1
Methanobacterium thermoautotrophicum biosynthetic metabolism 56 22 1