Experiment set16IT084 for Pseudomonas stutzeri RCH2

Compare to:

Lactate; aerobic; sample1

200 most important genes:

  gene name fitness t score description  
Psest_3944 -6.3 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0152 -5.7 -8.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_3650 -5.2 -8.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3298 -5.2 -11.0 histidinol dehydrogenase compare
Psest_3943 -5.1 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2590 -5.0 -1.6 3-isopropylmalate dehydratase, small subunit compare
Psest_0155 -4.8 -7.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3648 -4.8 -3.3 anthranilate phosphoribosyltransferase compare
Psest_3866 -4.8 -19.4 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0325 -4.6 -14.5 Putative threonine efflux protein compare
Psest_1473 -4.6 -4.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3299 -4.6 -14.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0279 -4.5 -8.0 methionine biosynthesis protein MetW compare
Psest_3864 -4.5 -16.9 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2578 -4.4 -14.9 O-succinylhomoserine sulfhydrylase compare
Psest_0508 -4.2 -8.8 gamma-glutamyl phosphate reductase compare
Psest_0326 -4.2 -16.0 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0153 -4.0 -14.8 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0280 -4.0 -16.2 homoserine O-acetyltransferase compare
Psest_0687 -3.9 -10.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2584 -3.8 -6.2 Phosphoribosylanthranilate isomerase compare
Psest_2591 -3.8 -4.7 3-isopropylmalate dehydratase, large subunit compare
Psest_0954 -3.5 -10.0 Fe-S oxidoreductase compare
Psest_3998 -3.5 -7.3 glutamate--cysteine ligase compare
Psest_3384 -3.5 -8.2 glutamate 5-kinase compare
Psest_2589 -3.3 -9.5 3-isopropylmalate dehydrogenase compare
Psest_0313 -3.3 -3.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3818 -3.1 -11.6 endoribonuclease L-PSP, putative compare
Psest_3647 -3.1 -2.1 Indole-3-glycerol phosphate synthase compare
Psest_0953 -3.1 -8.5 iron-sulfur cluster-binding protein compare
Psest_0952 -3.0 -3.7 Uncharacterized conserved protein compare
Psest_1772 -2.9 -5.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0718 -2.5 -6.1 nicotinate-nucleotide pyrophosphorylase compare
Psest_1295 -2.4 -3.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0327 -2.3 -4.1 Transcriptional regulator compare
Psest_3297 -2.1 -7.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1509 -2.0 -8.8 quinolinate synthetase complex, A subunit compare
Psest_2579 -2.0 -1.4 amidophosphoribosyltransferase compare
Psest_3649 -1.9 -6.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2329 -1.9 -11.3 Transcriptional regulator compare
Psest_0529 -1.9 -8.6 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0520 -1.9 -1.2 hypothetical protein compare
Psest_0193 -1.9 -2.3 conserved hypothetical protein compare
Psest_0845 -1.8 -0.9 hypothetical protein compare
Psest_1496 -1.8 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_2067 -1.8 -1.7 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2988 -1.8 -7.2 aspartate kinase, monofunctional class compare
Psest_1920 -1.7 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1686 -1.7 -3.6 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0062 -1.6 -4.5 tryptophan synthase, alpha subunit compare
Psest_3092 -1.6 -2.0 ribonuclease III, bacterial compare
Psest_0708 -1.6 -2.1 outer membrane assembly lipoprotein YfiO compare
Psest_4098 -1.5 -3.3 Superfamily I DNA and RNA helicases compare
Psest_0969 -1.4 -1.7 transcription elongation factor GreA compare
Psest_1417 -1.4 -2.1 hypothetical protein compare
Psest_1505 -1.4 -2.0 Organic radical activating enzymes compare
Psest_2809 -1.3 -2.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2566 -1.3 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2325 -1.3 -7.0 alpha-L-glutamate ligase-related protein compare
Psest_0955 -1.3 -4.8 D,L-lactate:H+ symporter (from data) compare
Psest_0161 -1.3 -2.1 Membrane-bound metallopeptidase compare
Psest_2104 -1.3 -1.6 IscR-regulated protein YhgI compare
Psest_4406 -1.3 -1.5 hypothetical protein compare
Psest_4003 -1.3 -4.5 TIGR00153 family protein compare
Psest_3413 -1.2 -3.1 hypothetical protein compare
Psest_0846 -1.2 -2.0 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_0844 -1.2 -3.8 High-affinity Fe2+/Pb2+ permease compare
Psest_0393 -1.2 -3.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1663 -1.2 -3.0 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_1037 -1.2 -2.0 acetolactate synthase, small subunit compare
Psest_1510 -1.2 -3.2 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1292 -1.2 -6.2 monothiol glutaredoxin, Grx4 family compare
Psest_2945 -1.2 -1.0 septum site-determining protein MinC compare
Psest_3962 -1.2 -1.7 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_1813 -1.2 -6.4 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_4078 -1.2 -1.7 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0170 -1.2 -4.7 5,10-methenyltetrahydrofolate synthetase compare
Psest_1001 -1.2 -2.4 hypothetical protein compare
Psest_0013 -1.2 -5.0 Lauroyl/myristoyl acyltransferase compare
Psest_1532 -1.2 -2.9 DNA recombination-dependent growth factor C compare
Psest_3565 -1.2 -1.3 hypothetical protein compare
Psest_2088 -1.1 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2304 -1.1 -1.3 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3168 -1.1 -2.1 Molybdopterin converting factor, large subunit compare
Psest_1293 -1.1 -1.7 VanZ like family. compare
Psest_1876 -1.1 -3.0 Predicted membrane protein compare
Psest_0575 -1.1 -0.8 HrpA-like helicases compare
Psest_1837 -1.1 -3.4 Endoglucanase compare
Psest_3766 -1.0 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0722 -1.0 -4.4 Predicted ATPase compare
Psest_2946 -1.0 -1.9 septum site-determining protein MinD compare
Psest_3843 -1.0 -5.8 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0310 -1.0 -2.5 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0740 -1.0 -1.7 Transcriptional regulator compare
Psest_0919 -1.0 -2.5 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_1814 -1.0 -7.0 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3862 -1.0 -6.7 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0958 -1.0 -4.4 Oligoketide cyclase/lipid transport protein compare
Psest_0097 -1.0 -2.0 phosphonates metabolism transcriptional regulator PhnF compare
Psest_2872 -1.0 -1.3 protein RecA compare
Psest_1870 -1.0 -1.4 Transcriptional regulators compare
Psest_1277 -1.0 -6.7 2-isopropylmalate synthase, yeast type compare
Psest_0466 -0.9 -2.3 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2791 -0.9 -2.0 hypothetical protein compare
Psest_2538 -0.9 -1.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3721 -0.9 -4.2 Malic enzyme compare
Psest_2324 -0.9 -5.2 hypothetical protein compare
Psest_1052 -0.9 -3.5 Uncharacterized protein involved in chromosome partitioning compare
Psest_3323 -0.9 -3.5 ribonuclease, Rne/Rng family compare
Psest_0601 -0.9 -1.8 hypothetical protein compare
Psest_4363 -0.9 -4.7 ATPases involved in chromosome partitioning compare
Psest_3938 -0.9 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_0294 -0.9 -2.4 Putative transcriptional regulator compare
Psest_2758 -0.9 -1.7 Predicted transcriptional regulators compare
Psest_1985 -0.8 -4.1 histidinol-phosphate aminotransferase compare
Psest_3174 -0.8 -6.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_1752 -0.8 -1.4 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_2327 -0.8 -3.9 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_3720 -0.8 -5.7 penicillin-binding protein, 1A family compare
Psest_3145 -0.8 -1.5 hypothetical protein compare
Psest_3767 -0.8 -2.3 tyrosine recombinase XerC compare
Psest_4051 -0.8 -2.0 molybdenum-pterin binding domain compare
Psest_2136 -0.8 -2.3 Predicted homoserine dehydrogenase compare
Psest_2810 -0.8 -2.4 5'/3'-nucleotidase SurE compare
Psest_1479 -0.8 -2.2 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_3383 -0.8 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_3860 -0.8 -1.5 Predicted permeases compare
Psest_0999 -0.8 -1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0737 -0.8 -0.7 Cu(I)-responsive transcriptional regulator compare
Psest_0889 -0.8 -3.0 Lactoylglutathione lyase and related lyases compare
Psest_3317 -0.8 -1.8 Phosphotransferase System HPr (HPr) Family compare
Psest_2225 -0.8 -1.5 Diacylglycerol kinase compare
Psest_0831 -0.8 -0.9 hypothetical protein compare
Psest_0063 -0.8 -1.2 tryptophan synthase, beta subunit compare
Psest_2718 -0.7 -0.9 hypothetical protein compare
Psest_1997 -0.7 -1.3 6-phosphogluconolactonase compare
Psest_3438 -0.7 -3.6 Glutamate dehydrogenase/leucine dehydrogenase compare
Psest_4316 -0.7 -1.6 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_3664 -0.7 -0.5 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0951 -0.7 -3.6 FAD/FMN-containing dehydrogenases compare
Psest_3136 -0.7 -3.6 Putative Mg2+ and Co2+ transporter CorB compare
Psest_0855 -0.7 -2.9 NAD-dependent aldehyde dehydrogenases compare
Psest_2667 -0.7 -1.7 Uncharacterized protein involved in propionate catabolism compare
Psest_0489 -0.7 -0.5 phosphoserine phosphatase SerB compare
Psest_0257 -0.7 -1.5 Predicted Zn-dependent peptidases compare
Psest_0799 -0.7 -1.4 Uncharacterized protein involved in response to NO compare
Psest_2285 -0.7 -1.8 ATP-dependent protease La compare
Psest_3988 -0.7 -2.6 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_1762 -0.7 -1.4 cytochrome c-type biogenesis protein CcmI compare
Psest_3045 -0.7 -1.2 Cold shock proteins compare
Psest_2798 -0.7 -1.6 Truncated hemoglobins compare
Psest_0284 -0.7 -5.0 pyridoxal phosphate enzyme, YggS family compare
Psest_0086 -0.7 -2.5 hypothetical protein compare
Psest_3351 -0.7 -2.8 peptide chain release factor 3 compare
Psest_2680 -0.7 -2.8 transcriptional regulator, BolA protein family compare
Psest_3042 -0.7 -0.9 Nitrate reductase cytochrome c-type subunit compare
Psest_1805 -0.7 -1.5 integration host factor, beta subunit compare
Psest_2531 -0.7 -4.4 cytochrome c oxidase accessory protein FixG compare
Psest_3146 -0.7 -1.1 hypothetical protein compare
Psest_0622 -0.7 -2.3 Disulfide bond formation protein DsbB compare
Psest_1884 -0.7 -1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3188 -0.7 -2.4 hypothetical protein compare
Psest_2333 -0.7 -0.6 Protein of unknown function (DUF3359). compare
Psest_1087 -0.7 -0.7 uncharacterized peroxidase-related enzyme compare
Psest_0843 -0.6 -3.3 hypothetical protein compare
Psest_1306 -0.6 -1.0 hypothetical protein compare
Psest_1593 -0.6 -3.3 hypothetical protein compare
Psest_0078 -0.6 -0.8 hypothetical protein compare
Psest_0442 -0.6 -1.4 ATPases of the AAA+ class compare
Psest_2585 -0.6 -0.4 pseudouridylate synthase I compare
Psest_0015 -0.6 -1.1 Tetratricopeptide repeat. compare
Psest_3816 -0.6 -0.7 DNA-directed RNA polymerase, omega subunit compare
Psest_3433 -0.6 -3.9 ATP-binding cassette protein, ChvD family compare
Psest_0584 -0.6 -2.9 hypothetical protein compare
Psest_3921 -0.6 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1989 -0.6 -2.6 Transcriptional regulators compare
Psest_1271 -0.6 -1.9 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family compare
Psest_3865 -0.6 -2.4 Predicted integral membrane protein (DUF2269). compare
Psest_0187 -0.6 -2.3 Metal-dependent hydrolase compare
Psest_2626 -0.6 -1.1 Flp pilus assembly protein CpaB compare
Psest_2678 -0.6 -2.6 Predicted protein-disulfide isomerase compare
Psest_1700 -0.6 -1.6 Transcriptional regulator compare
Psest_0082 -0.6 -1.4 Domain of unknown function (DUF892). compare
Psest_4303 -0.6 -1.1 HEAT repeat. compare
Psest_0462 -0.6 -5.1 Lipid A core - O-antigen ligase and related enzymes compare
Psest_1952 -0.6 -2.5 hypothetical protein compare
Psest_3321 -0.6 -3.4 Predicted amidohydrolase compare
Psest_2646 -0.6 -1.1 SOS regulatory protein LexA compare
Psest_3301 -0.6 -1.2 Predicted transcriptional regulator, BolA superfamily compare
Psest_0207 -0.6 -1.7 hypothetical protein compare
Psest_2973 -0.6 -3.1 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_3995 -0.6 -1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0970 -0.6 -1.2 hypothetical protein compare
Psest_0030 -0.6 -2.1 Putative NADH-flavin reductase compare
Psest_0320 -0.6 -1.9 ABC-type multidrug transport system, ATPase component compare
Psest_2719 -0.6 -0.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3180 -0.6 -3.4 Exonuclease I compare
Psest_1012 -0.6 -1.7 Signal transduction histidine kinase compare
Psest_2935 -0.6 -0.7 hypothetical protein compare
Psest_4345 -0.5 -2.9 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments