Experiment set16IT082 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrite with YE; anaerobic; with copper; sample2

200 most important genes:

  gene name fitness t score description  
Psest_0814 -4.3 -2.9 MoxR-like ATPases compare
Psest_2988 -3.8 -11.4 aspartate kinase, monofunctional class compare
Psest_0827 -3.7 -19.1 Nitric oxide reductase large subunit compare
Psest_0826 -3.4 -11.8 Cytochrome c compare
Psest_1473 -3.4 -7.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0508 -3.3 -9.2 gamma-glutamyl phosphate reductase compare
Psest_2234 -3.3 -13.9 oxygen-independent coproporphyrinogen III oxidase compare
Psest_0828 -3.0 -7.7 Nitric oxide reductase activation protein compare
Psest_3647 -2.9 -2.8 Indole-3-glycerol phosphate synthase compare
Psest_0830 -2.9 -11.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3384 -2.8 -8.3 glutamate 5-kinase compare
Psest_3650 -2.7 -13.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3322 -2.5 -17.5 TIGR02099 family protein compare
Psest_0393 -2.3 -9.6 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1022 -2.2 -10.4 Thiol:disulfide interchange protein compare
Psest_3648 -2.2 -7.4 anthranilate phosphoribosyltransferase compare
Psest_0790 -2.2 -4.3 Uncharacterized protein conserved in bacteria compare
Psest_0813 -2.2 -4.3 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_0952 -2.1 -3.4 Uncharacterized conserved protein compare
Psest_3129 -2.1 -1.3 tyrosine recombinase XerD compare
Psest_2579 -2.0 -1.9 amidophosphoribosyltransferase compare
Psest_0799 -1.9 -3.4 Uncharacterized protein involved in response to NO compare
Psest_2104 -1.9 -1.2 IscR-regulated protein YhgI compare
Psest_1724 -1.9 -4.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3649 -1.8 -8.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1656 -1.8 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1655 -1.7 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1509 -1.7 -9.4 quinolinate synthetase complex, A subunit compare
Psest_0796 -1.7 -4.0 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_0958 -1.7 -6.0 Oligoketide cyclase/lipid transport protein compare
Psest_2067 -1.7 -2.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1496 -1.6 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_3113 -1.6 -2.6 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0062 -1.6 -2.7 tryptophan synthase, alpha subunit compare
Psest_1012 -1.6 -3.0 Signal transduction histidine kinase compare
Psest_1686 -1.6 -4.8 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2809 -1.5 -2.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0821 -1.5 -10.1 Cytochrome D1 heme domain. compare
Psest_0820 -1.5 -4.5 hypothetical protein compare
Psest_4134 -1.5 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_0823 -1.5 -4.5 Transcriptional regulators compare
Psest_1663 -1.5 -2.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3843 -1.5 -6.6 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1417 -1.5 -2.3 hypothetical protein compare
Psest_0999 -1.4 -1.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2584 -1.4 -3.4 Phosphoribosylanthranilate isomerase compare
Psest_2798 -1.4 -3.5 Truncated hemoglobins compare
Psest_2325 -1.4 -6.0 alpha-L-glutamate ligase-related protein compare
Psest_0708 -1.3 -1.7 outer membrane assembly lipoprotein YfiO compare
Psest_4316 -1.3 -4.0 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_0144 -1.3 -5.3 Fe-S cluster protector protein compare
Psest_0998 -1.3 -1.6 poly(A) polymerase compare
Psest_0442 -1.3 -2.4 ATPases of the AAA+ class compare
Psest_0811 -1.3 -6.9 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_1814 -1.2 -8.0 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0718 -1.2 -3.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_1463 -1.2 -1.0 SufE protein probably involved in Fe-S center assembly compare
Psest_0515 -1.2 -2.0 rare lipoprotein A compare
Psest_2324 -1.2 -7.9 hypothetical protein compare
Psest_1920 -1.2 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2724 -1.2 -2.2 hypothetical protein compare
Psest_0152 -1.2 -4.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_3044 -1.2 -4.6 deoxycytidine triphosphate deaminase compare
Psest_1657 -1.2 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2744 -1.2 -1.5 Uncharacterized conserved protein compare
Psest_0815 -1.2 -8.5 Cytochrome c, mono- and diheme variants compare
Psest_0954 -1.2 -4.9 Fe-S oxidoreductase compare
Psest_0601 -1.2 -2.7 hypothetical protein compare
Psest_2946 -1.2 -1.7 septum site-determining protein MinD compare
Psest_0810 -1.1 -5.8 uroporphyrin-III C-methyltransferase compare
Psest_0296 -1.1 -5.2 glutathione synthetase, prokaryotic compare
Psest_1813 -1.1 -7.1 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1292 -1.1 -5.7 monothiol glutaredoxin, Grx4 family compare
Psest_0822 -1.1 -3.4 Transcriptional regulators compare
Psest_3998 -1.1 -4.8 glutamate--cysteine ligase compare
Psest_0313 -1.1 -3.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0795 -1.1 -3.5 ABC-type multidrug transport system, ATPase component compare
Psest_1752 -1.1 -1.8 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0953 -1.1 -4.7 iron-sulfur cluster-binding protein compare
Psest_2023 -1.0 -2.6 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3766 -1.0 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_1428 -1.0 -3.4 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_1518 -1.0 -2.6 tRNA_Ser_CGA compare
Psest_2424 -1.0 -2.1 K+ transport systems, NAD-binding component compare
Psest_0817 -1.0 -6.0 Ethylbenzene dehydrogenase. compare
Psest_0279 -1.0 -4.2 methionine biosynthesis protein MetW compare
Psest_3168 -1.0 -2.3 Molybdopterin converting factor, large subunit compare
Psest_0466 -1.0 -2.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3519 -1.0 -1.8 Uncharacterized conserved protein compare
Psest_0334 -1.0 -2.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2872 -1.0 -1.3 protein RecA compare
Psest_2626 -1.0 -3.0 Flp pilus assembly protein CpaB compare
Psest_0687 -1.0 -5.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0792 -0.9 -7.3 Regulator of nitric oxide reductase transcription compare
Psest_3323 -0.9 -3.8 ribonuclease, Rne/Rng family compare
Psest_0833 -0.9 -3.1 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
Psest_3565 -0.9 -1.2 hypothetical protein compare
Psest_1919 -0.9 -1.7 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_2523 -0.9 -2.9 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Psest_1659 -0.9 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0013 -0.9 -3.4 Lauroyl/myristoyl acyltransferase compare
Psest_0155 -0.9 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0161 -0.9 -1.5 Membrane-bound metallopeptidase compare
Psest_2758 -0.9 -2.2 Predicted transcriptional regulators compare
Psest_1001 -0.9 -1.6 hypothetical protein compare
Psest_3226 -0.9 -0.9 Predicted membrane protein compare
Psest_0794 -0.9 -6.8 parallel beta-helix repeat (two copies) compare
Psest_1238 -0.9 -4.0 Predicted membrane protein/domain compare
Psest_3936 -0.9 -3.1 ATP-dependent protease HslVU, peptidase subunit compare
Psest_1997 -0.9 -1.0 6-phosphogluconolactonase compare
Psest_1837 -0.9 -2.8 Endoglucanase compare
Psest_4345 -0.9 -4.0 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2491 -0.8 -3.0 succinyl-CoA synthetase, beta subunit compare
Psest_3115 -0.8 -4.0 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0793 -0.8 -6.6 Nitrous oxide reductase compare
Psest_0959 -0.8 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_4003 -0.8 -2.4 TIGR00153 family protein compare
Psest_4406 -0.8 -1.1 hypothetical protein compare
Psest_0297 -0.8 -1.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1809 -0.8 -4.8 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_2278 -0.8 -2.3 coenzyme PQQ biosynthesis protein PqqD compare
Psest_3174 -0.8 -5.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_1142 -0.8 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_4078 -0.8 -1.3 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0257 -0.8 -1.6 Predicted Zn-dependent peptidases compare
Psest_4126 -0.8 -2.0 Predicted peroxiredoxins compare
Psest_3921 -0.8 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0692 -0.8 -1.7 rRNA methylase, putative, group 3 compare
Psest_3117 -0.8 -2.4 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0919 -0.8 -2.2 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0844 -0.8 -1.8 High-affinity Fe2+/Pb2+ permease compare
Psest_2333 -0.8 -0.7 Protein of unknown function (DUF3359). compare
Psest_1505 -0.8 -1.3 Organic radical activating enzymes compare
Psest_4064 -0.8 -2.0 Lactate dehydrogenase and related dehydrogenases compare
Psest_1870 -0.8 -0.9 Transcriptional regulators compare
Psest_1661 -0.8 -0.5 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3777 -0.8 -2.1 diguanylate cyclase (GGDEF) domain compare
Psest_2539 -0.8 -1.7 adenine phosphoribosyltransferase compare
Psest_1293 -0.8 -1.2 VanZ like family. compare
Psest_0537 -0.8 -1.3 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_3736 -0.7 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_2899 -0.7 -1.2 hypothetical protein compare
Psest_1249 -0.7 -2.8 serine O-acetyltransferase compare
Psest_3112 -0.7 -2.3 electron transport complex, RnfABCDGE type, A subunit compare
Psest_3351 -0.7 -2.8 peptide chain release factor 3 compare
Psest_3136 -0.7 -4.2 Putative Mg2+ and Co2+ transporter CorB compare
Psest_0170 -0.7 -2.7 5,10-methenyltetrahydrofolate synthetase compare
Psest_0836 -0.7 -3.2 Collagenase and related proteases compare
Psest_3275 -0.7 -2.6 Stringent starvation protein B compare
Psest_3301 -0.7 -1.5 Predicted transcriptional regulator, BolA superfamily compare
Psest_1227 -0.7 -2.1 Predicted SAM-dependent methyltransferase compare
Psest_0063 -0.7 -0.8 tryptophan synthase, beta subunit compare
Psest_3317 -0.7 -1.7 Phosphotransferase System HPr (HPr) Family compare
Psest_4049 -0.7 -0.9 hypothetical protein compare
Psest_2329 -0.7 -4.7 Transcriptional regulator compare
Psest_2667 -0.7 -2.6 Uncharacterized protein involved in propionate catabolism compare
Psest_1295 -0.7 -2.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1954 -0.7 -1.8 hypothetical protein compare
Psest_2716 -0.7 -1.5 ABC-type multidrug transport system, ATPase component compare
Psest_1161 -0.7 -1.8 E3 Ubiquitin ligase. compare
Psest_1302 -0.7 -2.8 Predicted thioesterase compare
Psest_1103 -0.7 -1.7 GTP-binding protein YchF compare
Psest_1132 -0.7 -2.4 mutator mutT protein compare
Psest_3938 -0.7 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_3943 -0.7 -2.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3413 -0.6 -1.3 hypothetical protein compare
Psest_0902 -0.6 -2.1 Predicted transcriptional regulators compare
Psest_3937 -0.6 -0.7 ATP-dependent protease HslVU, ATPase subunit compare
Psest_1082 -0.6 -1.0 Enoyl-CoA hydratase/carnithine racemase compare
Psest_4128 -0.6 -1.3 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_4393 -0.6 -2.2 Capsule polysaccharide export protein compare
Psest_2580 -0.6 -3.0 Uncharacterized membrane protein, required for colicin V production compare
Psest_1660 -0.6 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3478 -0.6 -1.0 Cytochrome B561 compare
Psest_0969 -0.6 -0.7 transcription elongation factor GreA compare
Psest_0533 -0.6 -2.4 Sel1 repeat. compare
Psest_4396 -0.6 -3.4 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_1772 -0.6 -2.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4363 -0.6 -3.3 ATPases involved in chromosome partitioning compare
Psest_2748 -0.6 -1.0 Transcriptional regulator compare
Psest_1812 -0.6 -3.8 pseudaminic acid CMP-transferase compare
Psest_3720 -0.6 -3.8 penicillin-binding protein, 1A family compare
Psest_4224 -0.6 -4.3 hypothetical protein compare
Psest_0835 -0.6 -4.1 Collagenase and related proteases compare
Psest_2035 -0.6 -2.3 crcB protein compare
Psest_3862 -0.6 -4.3 phosphoenolpyruvate-protein phosphotransferase compare
Psest_1597 -0.6 -1.8 Protein of unknown function (DUF2933). compare
Psest_1623 -0.6 -2.8 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0855 -0.6 -1.9 NAD-dependent aldehyde dehydrogenases compare
Psest_0409 -0.6 -2.2 Putative homoserine kinase type II (protein kinase fold) compare
Psest_0462 -0.6 -5.1 Lipid A core - O-antigen ligase and related enzymes compare
Psest_0165 -0.6 -1.7 protein-export chaperone SecB compare
Psest_4314 -0.6 -2.0 ABC-type metal ion transport system, ATPase component compare
Psest_2801 -0.6 -2.1 hypothetical protein compare
Psest_1818 -0.6 -3.7 GDP-mannose 4,6-dehydratase compare
Psest_1318 -0.6 -1.7 ABC-type phosphate/phosphonate transport system, permease component compare
Psest_3298 -0.6 -3.5 histidinol dehydrogenase compare
Psest_1037 -0.6 -1.4 acetolactate synthase, small subunit compare
Psest_2490 -0.6 -3.3 succinyl-CoA synthetase, alpha subunit compare
Psest_2268 -0.6 -2.1 Alcohol dehydrogenase, class IV compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments

For metal limitation Sodium nitrite across organisms