Experiment set16IT081 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrite with YE; anaerobic; with copper; sample1

200 most important genes:

  gene name fitness t score description  
Psest_0826 -4.4 -11.6 Cytochrome c compare
Psest_0814 -4.3 -2.9 MoxR-like ATPases compare
Psest_2988 -4.1 -10.7 aspartate kinase, monofunctional class compare
Psest_0827 -3.8 -18.8 Nitric oxide reductase large subunit compare
Psest_0828 -3.7 -8.5 Nitric oxide reductase activation protein compare
Psest_2234 -3.6 -13.7 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1473 -3.5 -7.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0508 -3.4 -8.8 gamma-glutamyl phosphate reductase compare
Psest_3650 -2.8 -13.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3647 -2.8 -2.7 Indole-3-glycerol phosphate synthase compare
Psest_3648 -2.7 -8.7 anthranilate phosphoribosyltransferase compare
Psest_1022 -2.5 -10.2 Thiol:disulfide interchange protein compare
Psest_3384 -2.5 -8.6 glutamate 5-kinase compare
Psest_0799 -2.5 -5.3 Uncharacterized protein involved in response to NO compare
Psest_0830 -2.4 -8.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0813 -2.3 -4.1 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_0790 -2.2 -4.3 Uncharacterized protein conserved in bacteria compare
Psest_0958 -2.1 -6.2 Oligoketide cyclase/lipid transport protein compare
Psest_1509 -2.1 -9.9 quinolinate synthetase complex, A subunit compare
Psest_3322 -2.1 -15.0 TIGR02099 family protein compare
Psest_3843 -2.0 -9.5 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0954 -2.0 -7.1 Fe-S oxidoreductase compare
Psest_3649 -2.0 -9.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2744 -1.9 -2.4 Uncharacterized conserved protein compare
Psest_2584 -1.9 -3.6 Phosphoribosylanthranilate isomerase compare
Psest_2579 -1.9 -1.8 amidophosphoribosyltransferase compare
Psest_0919 -1.8 -4.1 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0820 -1.8 -5.7 hypothetical protein compare
Psest_0953 -1.8 -8.2 iron-sulfur cluster-binding protein compare
Psest_2104 -1.8 -1.2 IscR-regulated protein YhgI compare
Psest_1656 -1.8 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0193 -1.7 -1.7 conserved hypothetical protein compare
Psest_2491 -1.7 -6.4 succinyl-CoA synthetase, beta subunit compare
Psest_1295 -1.7 -4.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3998 -1.7 -6.8 glutamate--cysteine ligase compare
Psest_0062 -1.7 -2.5 tryptophan synthase, alpha subunit compare
Psest_1686 -1.6 -4.1 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0817 -1.6 -9.1 Ethylbenzene dehydrogenase. compare
Psest_0844 -1.5 -3.5 High-affinity Fe2+/Pb2+ permease compare
Psest_0152 -1.5 -6.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_0144 -1.5 -7.1 Fe-S cluster protector protein compare
Psest_1657 -1.5 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1012 -1.5 -3.0 Signal transduction histidine kinase compare
Psest_0296 -1.5 -7.9 glutathione synthetase, prokaryotic compare
Psest_1417 -1.5 -2.2 hypothetical protein compare
Psest_2067 -1.5 -2.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0821 -1.5 -9.2 Cytochrome D1 heme domain. compare
Psest_0811 -1.5 -8.1 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_4078 -1.4 -1.8 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2945 -1.4 -1.2 septum site-determining protein MinC compare
Psest_0164 -1.4 -0.9 Glutaredoxin, GrxC family compare
Psest_3301 -1.4 -2.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_2490 -1.4 -7.5 succinyl-CoA synthetase, alpha subunit compare
Psest_0313 -1.4 -4.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0393 -1.4 -4.3 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3766 -1.4 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_2714 -1.4 -1.4 7-cyano-7-deazaguanine reductase compare
Psest_3351 -1.3 -4.4 peptide chain release factor 3 compare
Psest_1242 -1.3 -2.0 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0718 -1.3 -3.5 nicotinate-nucleotide pyrophosphorylase compare
Psest_1082 -1.3 -2.1 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3045 -1.3 -2.5 Cold shock proteins compare
Psest_0013 -1.3 -5.4 Lauroyl/myristoyl acyltransferase compare
Psest_1659 -1.3 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0815 -1.3 -9.7 Cytochrome c, mono- and diheme variants compare
Psest_1505 -1.3 -1.8 Organic radical activating enzymes compare
Psest_0466 -1.3 -3.0 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3129 -1.3 -1.0 tyrosine recombinase XerD compare
Psest_2626 -1.3 -3.6 Flp pilus assembly protein CpaB compare
Psest_0810 -1.2 -6.2 uroporphyrin-III C-methyltransferase compare
Psest_3860 -1.2 -2.2 Predicted permeases compare
Psest_1813 -1.2 -7.2 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1496 -1.2 -0.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_2325 -1.2 -5.9 alpha-L-glutamate ligase-related protein compare
Psest_0822 -1.2 -3.2 Transcriptional regulators compare
Psest_3565 -1.2 -0.8 hypothetical protein compare
Psest_1700 -1.2 -3.3 Transcriptional regulator compare
Psest_4098 -1.2 -2.6 Superfamily I DNA and RNA helicases compare
Psest_2324 -1.2 -7.1 hypothetical protein compare
Psest_4363 -1.1 -5.5 ATPases involved in chromosome partitioning compare
Psest_0442 -1.1 -2.3 ATPases of the AAA+ class compare
Psest_1663 -1.1 -2.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0708 -1.1 -1.0 outer membrane assembly lipoprotein YfiO compare
Psest_3910 -1.1 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3323 -1.1 -4.4 ribonuclease, Rne/Rng family compare
Psest_0998 -1.1 -1.7 poly(A) polymerase compare
Psest_1940 -1.1 -2.8 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_0299 -1.1 -3.7 Chemotaxis signal transduction protein compare
Psest_0845 -1.1 -0.6 hypothetical protein compare
Psest_1292 -1.1 -5.4 monothiol glutaredoxin, Grx4 family compare
Psest_3921 -1.1 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_1814 -1.1 -6.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1660 -1.1 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3943 -1.0 -3.6 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2285 -1.0 -2.4 ATP-dependent protease La compare
Psest_0796 -1.0 -2.8 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_0823 -1.0 -3.0 Transcriptional regulators compare
Psest_2935 -1.0 -2.0 hypothetical protein compare
Psest_3720 -1.0 -6.8 penicillin-binding protein, 1A family compare
Psest_1919 -1.0 -1.6 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_1724 -1.0 -2.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4177 -1.0 -1.5 flagellar biosynthetic protein FliP compare
Psest_0833 -1.0 -2.8 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
Psest_0515 -1.0 -1.4 rare lipoprotein A compare
Psest_1249 -1.0 -3.5 serine O-acetyltransferase compare
Psest_2333 -1.0 -0.8 Protein of unknown function (DUF3359). compare
Psest_2716 -1.0 -2.4 ABC-type multidrug transport system, ATPase component compare
Psest_1506 -1.0 -3.1 queuosine biosynthesis protein QueC compare
Psest_0837 -1.0 -2.2 Putative lipid carrier protein compare
Psest_0155 -1.0 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2304 -0.9 -1.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1655 -0.9 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1238 -0.9 -5.0 Predicted membrane protein/domain compare
Psest_2101 -0.9 -1.4 hypothetical protein compare
Psest_1551 -0.9 -2.2 Integral membrane protein, interacts with FtsH compare
Psest_0794 -0.9 -7.6 parallel beta-helix repeat (two copies) compare
Psest_4298 -0.9 -0.7 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_4224 -0.9 -5.5 hypothetical protein compare
Psest_3937 -0.9 -0.9 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3146 -0.9 -1.5 hypothetical protein compare
Psest_1293 -0.9 -1.3 VanZ like family. compare
Psest_2809 -0.9 -2.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_4126 -0.9 -2.3 Predicted peroxiredoxins compare
Psest_3185 -0.9 -1.6 MoxR-like ATPases compare
Psest_0334 -0.8 -1.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2037 -0.8 -3.9 uroporphyrin-III C-methyltransferase compare
Psest_3174 -0.8 -6.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2748 -0.8 -1.0 Transcriptional regulator compare
Psest_2023 -0.8 -2.2 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_1142 -0.8 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0687 -0.8 -4.7 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0852 -0.8 -3.2 glucose-6-phosphate 1-dehydrogenase compare
Psest_2872 -0.8 -1.1 protein RecA compare
Psest_1463 -0.8 -0.7 SufE protein probably involved in Fe-S center assembly compare
Psest_2123 -0.8 -1.4 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_0955 -0.8 -3.0 D,L-lactate:H+ symporter (from data) compare
Psest_0297 -0.8 -1.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1230 -0.8 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2798 -0.8 -1.5 Truncated hemoglobins compare
Psest_2850 -0.8 -1.0 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_4316 -0.8 -2.9 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_0793 -0.8 -6.1 Nitrous oxide reductase compare
Psest_0855 -0.8 -2.9 NAD-dependent aldehyde dehydrogenases compare
Psest_1623 -0.8 -3.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1103 -0.8 -1.9 GTP-binding protein YchF compare
Psest_2329 -0.8 -5.3 Transcriptional regulator compare
Psest_1824 -0.8 -1.5 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3944 -0.8 -2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1990 -0.8 -2.1 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_0792 -0.8 -5.9 Regulator of nitric oxide reductase transcription compare
Psest_1318 -0.7 -1.8 ABC-type phosphate/phosphonate transport system, permease component compare
Psest_1326 -0.7 -1.9 Uncharacterized conserved protein compare
Psest_3842 -0.7 -2.5 Transcriptional regulators compare
Psest_0359 -0.7 -2.0 Transcriptional regulators compare
Psest_2265 -0.7 -2.6 Outer membrane protein compare
Psest_2561 -0.7 -0.7 hypothetical protein compare
Psest_1486 -0.7 -1.7 hypothetical protein compare
Psest_0175 -0.7 -3.3 Xaa-Pro aminopeptidase compare
Psest_1661 -0.7 -0.5 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0529 -0.7 -4.6 Putative Mg2+ and Co2+ transporter CorC compare
Psest_1510 -0.7 -1.9 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1117 -0.7 -2.1 Lipid A 3-O-deacylase (PagL). compare
Psest_3215 -0.7 -2.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_1001 -0.7 -1.8 hypothetical protein compare
Psest_3044 -0.7 -2.2 deoxycytidine triphosphate deaminase compare
Psest_0006 -0.7 -2.8 alkyl hydroperoxide reductase, F subunit compare
Psest_4371 -0.7 -1.8 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0462 -0.7 -6.0 Lipid A core - O-antigen ligase and related enzymes compare
Psest_2810 -0.7 -2.4 5'/3'-nucleotidase SurE compare
Psest_2288 -0.7 -2.1 trigger factor compare
Psest_0533 -0.7 -2.9 Sel1 repeat. compare
Psest_2513 -0.7 -2.0 Predicted membrane protein compare
Psest_0722 -0.7 -3.0 Predicted ATPase compare
Psest_3113 -0.7 -1.2 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0086 -0.7 -1.6 hypothetical protein compare
Psest_0489 -0.7 -0.4 phosphoserine phosphatase SerB compare
Psest_3112 -0.7 -2.0 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0988 -0.7 -1.7 Protein of unknown function (DUF2845). compare
Psest_3449 -0.7 -1.5 DJ-1 family protein compare
Psest_3101 -0.7 -4.7 L-aspartate oxidase compare
Psest_0170 -0.7 -2.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_3383 -0.7 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_0191 -0.7 -0.5 PAS domain S-box compare
Psest_0835 -0.7 -4.3 Collagenase and related proteases compare
Psest_3177 -0.7 -0.9 hypothetical protein compare
Psest_4225 -0.6 -4.5 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent compare
Psest_3936 -0.6 -3.2 ATP-dependent protease HslVU, peptidase subunit compare
Psest_4364 -0.6 -2.4 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_1809 -0.6 -3.3 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_3414 -0.6 -3.4 hypothetical protein compare
Psest_0537 -0.6 -1.0 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0959 -0.6 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2946 -0.6 -1.2 septum site-determining protein MinD compare
Psest_4211 -0.6 -2.0 conserverd hypothetical protein compare
Psest_0902 -0.6 -2.1 Predicted transcriptional regulators compare
Psest_0207 -0.6 -2.1 hypothetical protein compare
Psest_3339 -0.6 -2.2 Signal transduction histidine kinase compare
Psest_4345 -0.6 -2.5 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_4243 -0.6 -0.7 type VI secretion lipoprotein, VC_A0113 family compare
Psest_0461 -0.6 -3.1 Glycosyltransferase involved in LPS biosynthesis compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments

For metal limitation Sodium nitrite across organisms