Experiment set16IT080 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrite with YE; anaerobic; sample3

200 most important genes:

  gene name fitness t score description  
Psest_2988 -4.5 -11.2 aspartate kinase, monofunctional class compare
Psest_2234 -3.7 -15.3 oxygen-independent coproporphyrinogen III oxidase compare
Psest_0508 -3.2 -9.6 gamma-glutamyl phosphate reductase compare
Psest_3647 -3.1 -2.1 Indole-3-glycerol phosphate synthase compare
Psest_3650 -3.0 -13.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1686 -2.8 -5.7 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1022 -2.8 -10.9 Thiol:disulfide interchange protein compare
Psest_0814 -2.8 -3.6 MoxR-like ATPases compare
Psest_3384 -2.8 -8.3 glutamate 5-kinase compare
Psest_0828 -2.7 -7.4 Nitric oxide reductase activation protein compare
Psest_1663 -2.6 -5.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0826 -2.5 -10.8 Cytochrome c compare
Psest_0393 -2.5 -10.0 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2067 -2.5 -3.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0830 -2.5 -11.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0827 -2.5 -16.4 Nitric oxide reductase large subunit compare
Psest_1473 -2.5 -3.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3648 -2.5 -8.6 anthranilate phosphoribosyltransferase compare
Psest_3843 -2.4 -11.9 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0952 -2.4 -3.2 Uncharacterized conserved protein compare
Psest_2584 -2.4 -6.7 Phosphoribosylanthranilate isomerase compare
Psest_3649 -2.4 -10.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3322 -2.3 -16.8 TIGR02099 family protein compare
Psest_3766 -2.2 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_0193 -2.2 -2.0 conserved hypothetical protein compare
Psest_1920 -2.1 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2579 -2.1 -1.5 amidophosphoribosyltransferase compare
Psest_2104 -2.1 -1.4 IscR-regulated protein YhgI compare
Psest_1295 -2.0 -4.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1657 -1.9 -2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2333 -1.9 -1.4 Protein of unknown function (DUF3359). compare
Psest_0466 -1.9 -4.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1496 -1.8 -1.3 Holliday junction DNA helicase, RuvA subunit compare
Psest_0799 -1.8 -3.2 Uncharacterized protein involved in response to NO compare
Psest_1655 -1.7 -3.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0954 -1.7 -6.7 Fe-S oxidoreductase compare
Psest_0958 -1.7 -6.3 Oligoketide cyclase/lipid transport protein compare
Psest_0845 -1.7 -0.9 hypothetical protein compare
Psest_3744 -1.6 -6.9 Disulfide bond formation protein DsbB compare
Psest_1012 -1.6 -3.3 Signal transduction histidine kinase compare
Psest_0790 -1.6 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_1656 -1.6 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0953 -1.5 -6.3 iron-sulfur cluster-binding protein compare
Psest_0186 -1.5 -4.8 Protein-disulfide isomerase compare
Psest_1660 -1.4 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2324 -1.4 -8.1 hypothetical protein compare
Psest_1837 -1.4 -5.6 Endoglucanase compare
Psest_0297 -1.4 -4.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2308 -1.4 -1.2 Predicted Fe-S protein compare
Psest_2325 -1.4 -7.8 alpha-L-glutamate ligase-related protein compare
Psest_0718 -1.3 -3.5 nicotinate-nucleotide pyrophosphorylase compare
Psest_1509 -1.3 -5.0 quinolinate synthetase complex, A subunit compare
Psest_3565 -1.3 -1.6 hypothetical protein compare
Psest_1659 -1.3 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1813 -1.3 -7.1 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2946 -1.3 -2.2 septum site-determining protein MinD compare
Psest_0609 -1.3 -2.3 hypothetical protein compare
Psest_0144 -1.3 -6.8 Fe-S cluster protector protein compare
Psest_1724 -1.3 -3.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0813 -1.3 -3.2 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_1814 -1.3 -8.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0257 -1.2 -2.7 Predicted Zn-dependent peptidases compare
Psest_3998 -1.2 -5.6 glutamate--cysteine ligase compare
Psest_2590 -1.2 -1.3 3-isopropylmalate dehydratase, small subunit compare
Psest_2809 -1.2 -2.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2490 -1.2 -6.5 succinyl-CoA synthetase, alpha subunit compare
Psest_0152 -1.2 -4.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_3045 -1.2 -2.2 Cold shock proteins compare
Psest_0969 -1.2 -2.1 transcription elongation factor GreA compare
Psest_0313 -1.1 -3.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4126 -1.1 -2.4 Predicted peroxiredoxins compare
Psest_0820 -1.1 -5.2 hypothetical protein compare
Psest_2744 -1.1 -1.7 Uncharacterized conserved protein compare
Psest_2566 -1.1 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2123 -1.1 -1.6 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_4221 -1.1 -3.3 homoserine kinase, Neisseria type compare
Psest_2491 -1.1 -3.5 succinyl-CoA synthetase, beta subunit compare
Psest_3921 -1.1 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_1505 -1.1 -1.6 Organic radical activating enzymes compare
Psest_0815 -1.0 -7.7 Cytochrome c, mono- and diheme variants compare
Psest_3174 -1.0 -6.9 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3323 -1.0 -2.7 ribonuclease, Rne/Rng family compare
Psest_0155 -1.0 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0811 -1.0 -6.7 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_1249 -1.0 -3.7 serine O-acetyltransferase compare
Psest_0821 -1.0 -7.0 Cytochrome D1 heme domain. compare
Psest_0817 -1.0 -6.3 Ethylbenzene dehydrogenase. compare
Psest_0498 -1.0 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_3736 -1.0 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3231 -1.0 -2.2 hypothetical protein compare
Psest_3042 -1.0 -1.1 Nitrate reductase cytochrome c-type subunit compare
Psest_0999 -1.0 -1.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4363 -1.0 -4.9 ATPases involved in chromosome partitioning compare
Psest_4078 -1.0 -1.5 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0833 -1.0 -3.0 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
Psest_4316 -1.0 -2.2 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_1952 -0.9 -4.0 hypothetical protein compare
Psest_0296 -0.9 -4.9 glutathione synthetase, prokaryotic compare
Psest_2714 -0.9 -1.2 7-cyano-7-deazaguanine reductase compare
Psest_0855 -0.9 -3.5 NAD-dependent aldehyde dehydrogenases compare
Psest_3777 -0.9 -2.7 diguanylate cyclase (GGDEF) domain compare
Psest_0794 -0.9 -7.5 parallel beta-helix repeat (two copies) compare
Psest_0810 -0.9 -4.2 uroporphyrin-III C-methyltransferase compare
Psest_1661 -0.9 -0.6 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1082 -0.9 -1.2 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3092 -0.9 -1.2 ribonuclease III, bacterial compare
Psest_2304 -0.9 -1.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0622 -0.9 -3.4 Disulfide bond formation protein DsbB compare
Psest_4345 -0.9 -3.6 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1997 -0.9 -1.3 6-phosphogluconolactonase compare
Psest_2945 -0.9 -0.9 septum site-determining protein MinC compare
Psest_2585 -0.9 -0.5 pseudouridylate synthase I compare
Psest_3298 -0.9 -5.1 histidinol dehydrogenase compare
Psest_0796 -0.8 -3.0 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_4098 -0.8 -1.9 Superfamily I DNA and RNA helicases compare
Psest_0687 -0.8 -4.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0529 -0.8 -4.4 Putative Mg2+ and Co2+ transporter CorC compare
Psest_1940 -0.8 -2.9 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_1280 -0.8 -5.9 TonB-dependent copper receptor compare
Psest_3943 -0.8 -2.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3044 -0.8 -3.3 deoxycytidine triphosphate deaminase compare
Psest_1292 -0.8 -4.5 monothiol glutaredoxin, Grx4 family compare
Psest_3237 -0.8 -1.3 hypothetical protein compare
Psest_4170 -0.8 -1.4 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3720 -0.8 -5.6 penicillin-binding protein, 1A family compare
Psest_0062 -0.8 -2.2 tryptophan synthase, alpha subunit compare
Psest_4003 -0.8 -2.4 TIGR00153 family protein compare
Psest_0823 -0.8 -2.9 Transcriptional regulators compare
Psest_0013 -0.8 -2.8 Lauroyl/myristoyl acyltransferase compare
Psest_2329 -0.8 -5.5 Transcriptional regulator compare
Psest_3226 -0.8 -0.8 Predicted membrane protein compare
Psest_4314 -0.8 -2.8 ABC-type metal ion transport system, ATPase component compare
Psest_4134 -0.8 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1695 -0.8 -1.8 Tfp pilus assembly protein PilZ compare
Psest_2538 -0.8 -1.5 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1103 -0.7 -1.9 GTP-binding protein YchF compare
Psest_2578 -0.7 -4.8 O-succinylhomoserine sulfhydrylase compare
Psest_0884 -0.7 -4.1 Toxin with endonuclease activity YhaV. compare
Psest_2643 -0.7 -1.2 Beta-glucosidase-related glycosidases compare
Psest_0601 -0.7 -2.2 hypothetical protein compare
Psest_0187 -0.7 -3.1 Metal-dependent hydrolase compare
Psest_3177 -0.7 -1.0 hypothetical protein compare
Psest_2088 -0.7 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_2730 -0.7 -2.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1306 -0.7 -1.2 hypothetical protein compare
Psest_0086 -0.7 -1.8 hypothetical protein compare
Psest_2253 -0.7 -1.7 small redox-active disulfide protein 2 compare
Psest_3145 -0.7 -1.1 hypothetical protein compare
Psest_1037 -0.7 -1.6 acetolactate synthase, small subunit compare
Psest_2771 -0.7 -1.5 Predicted membrane protein compare
Psest_3414 -0.7 -3.5 hypothetical protein compare
Psest_3247 -0.7 -0.9 Uncharacterized membrane protein compare
Psest_0852 -0.7 -2.5 glucose-6-phosphate 1-dehydrogenase compare
Psest_0462 -0.7 -6.0 Lipid A core - O-antigen ligase and related enzymes compare
Psest_2976 -0.7 -1.2 hypothetical protein compare
Psest_2135 -0.7 -1.6 Peroxiredoxin compare
Psest_2872 -0.7 -1.0 protein RecA compare
Psest_0299 -0.7 -2.1 Chemotaxis signal transduction protein compare
Psest_2810 -0.7 -3.1 5'/3'-nucleotidase SurE compare
Psest_0608 -0.7 -3.6 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Psest_3938 -0.7 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_0955 -0.7 -2.2 D,L-lactate:H+ symporter (from data) compare
Psest_3136 -0.7 -3.2 Putative Mg2+ and Co2+ transporter CorB compare
Psest_3767 -0.7 -1.9 tyrosine recombinase XerC compare
Psest_3575 -0.7 -3.0 Arabinose efflux permease compare
Psest_0722 -0.7 -3.1 Predicted ATPase compare
Psest_3865 -0.7 -2.1 Predicted integral membrane protein (DUF2269). compare
Psest_0919 -0.7 -1.3 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_2719 -0.7 -1.1 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0869 -0.7 -2.1 Acetyltransferase (isoleucine patch superfamily) compare
Psest_0489 -0.7 -0.4 phosphoserine phosphatase SerB compare
Psest_3317 -0.6 -2.6 Phosphotransferase System HPr (HPr) Family compare
Psest_0279 -0.6 -3.2 methionine biosynthesis protein MetW compare
Psest_4265 -0.6 -4.1 dTDP-4-dehydrorhamnose reductase compare
Psest_0853 -0.6 -2.4 6-phosphogluconolactonase compare
Psest_1809 -0.6 -3.4 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1474 -0.6 -0.4 phosphoribosylaminoimidazole synthetase compare
Psest_3299 -0.6 -4.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_1617 -0.6 -2.1 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_1315 -0.6 -1.3 hypothetical protein compare
Psest_0309 -0.6 -0.5 RND family efflux transporter, MFP subunit compare
Psest_4043 -0.6 -2.2 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_1227 -0.6 -1.8 Predicted SAM-dependent methyltransferase compare
Psest_0902 -0.6 -2.1 Predicted transcriptional regulators compare
Psest_2748 -0.6 -1.0 Transcriptional regulator compare
Psest_0218 -0.6 -1.6 Acyl-CoA hydrolase compare
Psest_0294 -0.6 -1.9 Putative transcriptional regulator compare
Psest_3383 -0.6 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_0792 -0.6 -5.1 Regulator of nitric oxide reductase transcription compare
Psest_3339 -0.6 -2.4 Signal transduction histidine kinase compare
Psest_3101 -0.6 -4.5 L-aspartate oxidase compare
Psest_1623 -0.6 -2.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_4364 -0.6 -2.2 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_1417 -0.6 -1.2 hypothetical protein compare
Psest_0692 -0.6 -1.7 rRNA methylase, putative, group 3 compare
Psest_0797 -0.6 -4.2 Predicted lipoprotein involved in nitrous oxide reduction compare
Psest_1918 -0.6 -3.2 Calcineurin-like phosphoesterase. compare
Psest_3416 -0.6 -4.1 Predicted ATPase (AAA+ superfamily) compare
Psest_2229 -0.6 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2523 -0.6 -2.0 Predicted hydrolase of the alpha/beta-hydrolase fold compare


Specific Phenotypes

For 1 genes in this experiment

For metal limitation Sodium nitrite in Pseudomonas stutzeri RCH2

For metal limitation Sodium nitrite across organisms