Experiment set16IT079 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrite with YE; anaerobic; sample2

200 most important genes:

  gene name fitness t score description  
Psest_1473 -4.3 -7.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2988 -4.1 -11.1 aspartate kinase, monofunctional class compare
Psest_2234 -3.4 -14.9 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3650 -3.0 -14.5 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0508 -3.0 -9.4 gamma-glutamyl phosphate reductase compare
Psest_3647 -2.8 -3.2 Indole-3-glycerol phosphate synthase compare
Psest_0814 -2.8 -3.0 MoxR-like ATPases compare
Psest_3648 -2.6 -8.7 anthranilate phosphoribosyltransferase compare
Psest_1022 -2.5 -10.9 Thiol:disulfide interchange protein compare
Psest_0827 -2.5 -16.0 Nitric oxide reductase large subunit compare
Psest_0830 -2.3 -12.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2584 -2.3 -6.8 Phosphoribosylanthranilate isomerase compare
Psest_0826 -2.3 -10.8 Cytochrome c compare
Psest_3384 -2.2 -8.3 glutamate 5-kinase compare
Psest_3649 -2.1 -8.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0393 -2.1 -6.4 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2579 -2.1 -1.5 amidophosphoribosyltransferase compare
Psest_3322 -2.1 -14.5 TIGR02099 family protein compare
Psest_0828 -2.0 -6.0 Nitric oxide reductase activation protein compare
Psest_3226 -2.0 -1.6 Predicted membrane protein compare
Psest_0952 -2.0 -4.0 Uncharacterized conserved protein compare
Psest_3744 -1.9 -7.8 Disulfide bond formation protein DsbB compare
Psest_2104 -1.9 -1.7 IscR-regulated protein YhgI compare
Psest_1686 -1.9 -5.9 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3843 -1.8 -10.3 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1659 -1.8 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2491 -1.8 -6.8 succinyl-CoA synthetase, beta subunit compare
Psest_1656 -1.8 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0790 -1.8 -4.4 Uncharacterized protein conserved in bacteria compare
Psest_1655 -1.8 -3.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0998 -1.7 -2.2 poly(A) polymerase compare
Psest_2490 -1.7 -9.5 succinyl-CoA synthetase, alpha subunit compare
Psest_0186 -1.7 -5.2 Protein-disulfide isomerase compare
Psest_0799 -1.7 -3.0 Uncharacterized protein involved in response to NO compare
Psest_2809 -1.7 -3.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0062 -1.7 -2.7 tryptophan synthase, alpha subunit compare
Psest_0954 -1.6 -6.8 Fe-S oxidoreductase compare
Psest_1509 -1.6 -8.1 quinolinate synthetase complex, A subunit compare
Psest_1295 -1.6 -4.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0334 -1.5 -3.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0193 -1.5 -1.3 conserved hypothetical protein compare
Psest_1814 -1.5 -11.0 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0953 -1.5 -6.5 iron-sulfur cluster-binding protein compare
Psest_2325 -1.4 -7.1 alpha-L-glutamate ligase-related protein compare
Psest_1012 -1.4 -3.4 Signal transduction histidine kinase compare
Psest_4078 -1.4 -2.0 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2324 -1.4 -8.8 hypothetical protein compare
Psest_1837 -1.4 -5.2 Endoglucanase compare
Psest_1249 -1.3 -4.6 serine O-acetyltransferase compare
Psest_1496 -1.3 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_1306 -1.3 -1.9 hypothetical protein compare
Psest_2333 -1.3 -1.2 Protein of unknown function (DUF3359). compare
Psest_1724 -1.3 -2.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0442 -1.3 -2.6 ATPases of the AAA+ class compare
Psest_1813 -1.3 -7.4 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0297 -1.2 -3.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3129 -1.2 -1.2 tyrosine recombinase XerD compare
Psest_3944 -1.2 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2225 -1.2 -2.7 Diacylglycerol kinase compare
Psest_2067 -1.2 -2.1 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1082 -1.2 -2.6 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0958 -1.2 -5.0 Oligoketide cyclase/lipid transport protein compare
Psest_3998 -1.2 -5.6 glutamate--cysteine ligase compare
Psest_0313 -1.2 -4.3 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0820 -1.2 -5.6 hypothetical protein compare
Psest_0813 -1.2 -3.8 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_1700 -1.2 -3.7 Transcriptional regulator compare
Psest_3449 -1.2 -1.7 DJ-1 family protein compare
Psest_3323 -1.1 -3.9 ribonuclease, Rne/Rng family compare
Psest_0152 -1.1 -5.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_0687 -1.1 -5.8 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1505 -1.1 -1.8 Organic radical activating enzymes compare
Psest_0144 -1.1 -5.5 Fe-S cluster protector protein compare
Psest_3113 -1.1 -2.3 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1660 -1.1 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3921 -1.1 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0609 -1.1 -1.8 hypothetical protein compare
Psest_0155 -1.1 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3766 -1.1 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3174 -1.1 -7.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2744 -1.1 -1.5 Uncharacterized conserved protein compare
Psest_4003 -1.1 -3.9 TIGR00153 family protein compare
Psest_2023 -1.0 -3.0 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_0811 -1.0 -5.5 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_0823 -1.0 -3.1 Transcriptional regulators compare
Psest_0844 -1.0 -2.3 High-affinity Fe2+/Pb2+ permease compare
Psest_1280 -1.0 -7.4 TonB-dependent copper receptor compare
Psest_1326 -1.0 -2.4 Uncharacterized conserved protein compare
Psest_3045 -1.0 -2.2 Cold shock proteins compare
Psest_0718 -1.0 -3.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_3231 -1.0 -2.2 hypothetical protein compare
Psest_0515 -1.0 -2.0 rare lipoprotein A compare
Psest_1870 -1.0 -1.4 Transcriptional regulators compare
Psest_2173 -0.9 -3.2 competence/damage-inducible protein CinA C-terminal domain compare
Psest_0815 -0.9 -6.9 Cytochrome c, mono- and diheme variants compare
Psest_1657 -0.9 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_4363 -0.9 -4.8 ATPases involved in chromosome partitioning compare
Psest_0821 -0.9 -6.9 Cytochrome D1 heme domain. compare
Psest_2293 -0.9 -1.4 hypothetical protein compare
Psest_1782 -0.9 -1.9 Predicted transcriptional regulators compare
Psest_2864 -0.9 -2.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4064 -0.9 -2.9 Lactate dehydrogenase and related dehydrogenases compare
Psest_2517 -0.9 -3.4 hypothetical protein compare
Psest_0810 -0.9 -5.3 uroporphyrin-III C-methyltransferase compare
Psest_0817 -0.9 -5.6 Ethylbenzene dehydrogenase. compare
Psest_4345 -0.9 -4.3 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2278 -0.9 -1.9 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1661 -0.9 -0.6 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2976 -0.9 -1.5 hypothetical protein compare
Psest_2935 -0.9 -1.8 hypothetical protein compare
Psest_3112 -0.9 -3.1 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0296 -0.9 -3.8 glutathione synthetase, prokaryotic compare
Psest_1663 -0.9 -3.1 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3546 -0.9 -0.6 Phosphatidylglycerophosphatase A and related proteins compare
Psest_0793 -0.9 -7.0 Nitrous oxide reductase compare
Psest_2626 -0.9 -2.2 Flp pilus assembly protein CpaB compare
Psest_1695 -0.8 -2.2 Tfp pilus assembly protein PilZ compare
Psest_1879 -0.8 -2.0 Trk-type K+ transport systems, membrane components compare
Psest_0498 -0.8 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_1563 -0.8 -2.2 Protein of unknown function (DUF548). compare
Psest_1292 -0.8 -4.4 monothiol glutaredoxin, Grx4 family compare
Psest_2945 -0.8 -0.8 septum site-determining protein MinC compare
Psest_1184 -0.8 -2.7 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_3960 -0.8 -0.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0466 -0.8 -2.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0796 -0.8 -1.7 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_2136 -0.8 -2.6 Predicted homoserine dehydrogenase compare
Psest_0020 -0.8 -2.8 K+ transport systems, NAD-binding component compare
Psest_2285 -0.8 -1.9 ATP-dependent protease La compare
Psest_1958 -0.8 -2.6 Glutaredoxin-like domain (DUF836). compare
Psest_3809 -0.8 -2.8 hypothetical protein compare
Psest_0529 -0.8 -5.0 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0722 -0.8 -3.6 Predicted ATPase compare
Psest_0218 -0.8 -2.5 Acyl-CoA hydrolase compare
Psest_0182 -0.8 -4.0 glycine cleavage system H protein compare
Psest_1540 -0.8 -1.1 biotin-dependent carboxylase uncharacterized domain compare
Psest_2323 -0.8 -5.1 Uncharacterized protein conserved in archaea compare
Psest_0170 -0.8 -2.3 5,10-methenyltetrahydrofolate synthetase compare
Psest_3092 -0.8 -1.1 ribonuclease III, bacterial compare
Psest_3943 -0.8 -2.7 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0794 -0.8 -6.0 parallel beta-helix repeat (two copies) compare
Psest_1642 -0.7 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_0919 -0.7 -1.5 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_1506 -0.7 -2.7 queuosine biosynthesis protein QueC compare
Psest_3806 -0.7 -4.2 Phosphomannomutase compare
Psest_3720 -0.7 -4.7 penicillin-binding protein, 1A family compare
Psest_3913 -0.7 -1.7 hypothetical protein compare
Psest_3339 -0.7 -2.6 Signal transduction histidine kinase compare
Psest_0013 -0.7 -2.9 Lauroyl/myristoyl acyltransferase compare
Psest_2083 -0.7 -2.9 Putative sterol carrier protein compare
Psest_0489 -0.7 -0.5 phosphoserine phosphatase SerB compare
Psest_1989 -0.7 -3.4 Transcriptional regulators compare
Psest_2329 -0.7 -5.2 Transcriptional regulator compare
Psest_1997 -0.7 -1.2 6-phosphogluconolactonase compare
Psest_3183 -0.7 -3.7 hypothetical protein compare
Psest_0622 -0.7 -2.4 Disulfide bond formation protein DsbB compare
Psest_2122 -0.7 -1.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2939 -0.7 -1.9 Predicted membrane protein compare
Psest_1417 -0.7 -1.4 hypothetical protein compare
Psest_0724 -0.7 -2.7 Deoxyinosine 3'endonuclease (endonuclease V) compare
Psest_1809 -0.7 -3.9 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_2798 -0.7 -2.6 Truncated hemoglobins compare
Psest_0462 -0.7 -6.1 Lipid A core - O-antigen ligase and related enzymes compare
Psest_2135 -0.7 -1.9 Peroxiredoxin compare
Psest_2646 -0.7 -1.1 SOS regulatory protein LexA compare
Psest_2123 -0.7 -1.6 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3338 -0.7 -0.4 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2183 -0.7 -2.5 Transcriptional regulator compare
Psest_1822 -0.7 -3.6 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1466 -0.7 -2.1 transcriptional regulator, Spx/MgsR family compare
Psest_0797 -0.7 -4.2 Predicted lipoprotein involved in nitrous oxide reduction compare
Psest_2578 -0.7 -4.4 O-succinylhomoserine sulfhydrylase compare
Psest_0041 -0.7 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_2304 -0.7 -0.9 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0692 -0.7 -1.5 rRNA methylase, putative, group 3 compare
Psest_1480 -0.7 -1.4 arsenate reductase (glutaredoxin) compare
Psest_3301 -0.7 -1.4 Predicted transcriptional regulator, BolA superfamily compare
Psest_3864 -0.7 -4.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0902 -0.7 -2.2 Predicted transcriptional regulators compare
Psest_2810 -0.7 -2.4 5'/3'-nucleotidase SurE compare
Psest_4221 -0.7 -2.0 homoserine kinase, Neisseria type compare
Psest_0300 -0.7 -3.8 Methyl-accepting chemotaxis protein compare
Psest_4225 -0.7 -4.5 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent compare
Psest_1238 -0.7 -3.4 Predicted membrane protein/domain compare
Psest_1952 -0.7 -2.7 hypothetical protein compare
Psest_0015 -0.6 -1.3 Tetratricopeptide repeat. compare
Psest_0719 -0.6 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_2651 -0.6 -0.9 DNA topoisomerase I, bacterial compare
Psest_2092 -0.6 -2.3 hypothetical protein compare
Psest_0969 -0.6 -1.2 transcription elongation factor GreA compare
Psest_0852 -0.6 -2.9 glucose-6-phosphate 1-dehydrogenase compare
Psest_0955 -0.6 -3.0 D,L-lactate:H+ symporter (from data) compare
Psest_3177 -0.6 -1.1 hypothetical protein compare
Psest_1486 -0.6 -1.8 hypothetical protein compare
Psest_4316 -0.6 -1.8 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_0294 -0.6 -1.8 Putative transcriptional regulator compare
Psest_3298 -0.6 -3.9 histidinol dehydrogenase compare
Psest_3136 -0.6 -3.3 Putative Mg2+ and Co2+ transporter CorB compare
Psest_2561 -0.6 -0.7 hypothetical protein compare
Psest_0601 -0.6 -1.7 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For metal limitation Sodium nitrite in Pseudomonas stutzeri RCH2

For metal limitation Sodium nitrite across organisms