Experiment set16IT078 for Shewanella oneidensis MR-1

Compare to:

NoPredeControl

200 most detrimental genes:

  gene name fitness t score description  
SO3966 mgtE-2 +3.8 30.8 magnesium transporter (NCBI ptt file) compare
SO3963 ptsN +1.9 4.3 nitrogen regulatory IIA protein (NCBI ptt file) compare
SO1801 sapF +1.7 4.1 peptide ABC transporter, ATP-binding protein (NCBI ptt file) compare
SO3082 sixA +1.6 5.7 phosphohistidine phosphatase SixA (NCBI ptt file) compare
SO3563 +1.5 1.1 SM-20 domain protein (NCBI ptt file) compare
SO_t008 tRNA-Thr-1 +1.2 1.2 tRNA-Thr (RefSeq) compare
SO0879 +1.2 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO1805 sapA +1.2 1.9 peptide ABC transporter, periplasmic peptide-binding protein (NCBI ptt file) compare
SOA0057 +1.1 1.3 hypothetical protein (NCBI ptt file) compare
SO3104 +1.1 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO_A0174 +1.0 3.7 hypothetical protein (NCBI) compare
SOA0014 +1.0 2.5 hypothetical protein (NCBI ptt file) compare
SO0175 gspM +1.0 1.6 general secretion pathway protein M (NCBI ptt file) compare
SO3195 +0.9 2.6 hypothetical peptide transporter (NCBI ptt file) compare
SO3767 +0.9 2.0 hypothetical protein (NCBI ptt file) compare
SO0973 +0.9 1.2 hypothetical protein (NCBI ptt file) compare
SO3110 secF-2 +0.9 2.5 protein-export membrane protein SecF (NCBI ptt file) compare
SO3765 +0.9 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO2470 +0.8 2.6 conserved hypothetical protein (NCBI ptt file) compare
SO2234 +0.8 2.7 hypothetical protein (NCBI ptt file) compare
SO0554 +0.8 2.0 hypothetical protein (NCBI ptt file) compare
SO1878 +0.8 1.4 glycine cleavage system transcriptional repressor, putative (NCBI ptt file) compare
SO2788 rrmA +0.8 2.8 ribosomal RNA large subunit methyltransferase A (NCBI ptt file) compare
SOA0005 +0.8 4.8 hypothetical protein (NCBI ptt file) compare
SO1021 nuoA +0.8 1.7 NADH dehydrogenase I, A subunit (NCBI ptt file) compare
SOA0010 +0.8 4.9 conserved hypothetical protein (NCBI ptt file) compare
SO2429 ruvB +0.8 1.4 Holliday junction DNA helicase RuvB (NCBI ptt file) compare
SO3190 +0.8 5.2 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO0447 +0.8 2.1 hypothetical protein (NCBI ptt file) compare
SO1947 +0.8 2.8 hypothetical protein (NCBI ptt file) compare
SOA0013 umuD +0.8 4.1 umuD protein (VIMSS) compare
SO3346 +0.8 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO2153.1 +0.7 2.6 hypothetical transposase (NCBI ptt file) compare
SO0504 fre +0.7 3.3 NAD(P)H-flavin reductase (NCBI ptt file) compare
SO2396 +0.7 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO3076 +0.7 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO2290 +0.7 3.0 rhodanese domain protein (NCBI ptt file) compare
SO1068 +0.7 2.2 conserved hypothetical protein (NCBI ptt file) compare
SOA0008 +0.7 5.4 hypothetical protein (NCBI ptt file) compare
SO2071 hisB +0.7 3.3 imidazoleglycerol-phosphate dehydratase/histidinol-phosphatase (NCBI ptt file) compare
SO0424 aceE +0.7 3.9 pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase (NCBI ptt file) compare
SO2332 +0.7 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO3819.3 +0.7 1.9 hypothetical ammonia permease (NCBI ptt file) compare
SO_A0009 +0.7 4.4 hypothetical protein (NCBI) compare
SO0425 aceF +0.7 3.9 pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase (NCBI ptt file) compare
SO4566 +0.7 1.0 hypothetical protein (NCBI ptt file) compare
SO4648 +0.7 3.3 sensor histidine kinase (NCBI ptt file) compare
SO2285 +0.7 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO1510 +0.7 2.0 hypothetical protein (NCBI ptt file) compare
SOA0171 +0.7 3.2 hypothetical protein (NCBI ptt file) compare
SO2103 +0.7 2.4 apbE family protein (NCBI ptt file) compare
SO0032 def-1 +0.7 4.7 polypeptide deformylase (NCBI ptt file) compare
SO4196 +0.7 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO2182 +0.7 2.7 conserved hypothetical protein (NCBI ptt file) compare
SO2773 +0.7 0.6 hypothetical protein (NCBI ptt file) compare
SO2422 +0.7 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO4227 +0.6 0.6 conserved hypothetical protein TIGR00006 (NCBI ptt file) compare
SO0423 pdhR +0.6 2.5 pyruvate dehydrogenase complex repressor (NCBI ptt file) compare
SO0617 argD +0.6 3.9 acetylornithine aminotransferase (NCBI ptt file) compare
SO1191 greA +0.6 1.4 transcription elongation factor GreA (NCBI ptt file) compare
SO1123 +0.6 1.7 hypothetical protein (NCBI ptt file) compare
SO2111 +0.6 1.1 hypothetical protein (NCBI ptt file) compare
SOA0002 +0.6 6.2 type II restriction-modification system activator, putative (NCBI ptt file) compare
SOA0003 +0.6 6.0 type II restriction endonuclease, putative (NCBI ptt file) compare
SO_A0007 +0.6 4.5 hypothetical protein (NCBI) compare
SO2297 +0.6 0.7 conserved hypothetical protein (NCBI ptt file) compare
SOA0172 +0.6 4.3 site-specific recombinase, resolvase family (NCBI ptt file) compare
SO1892 atoD +0.6 2.1 acetate CoA-transferase, subunit A (NCBI ptt file) compare
SO1210.1 +0.6 1.7 hypothetical peptide chain release factor 3 (NCBI ptt file) compare
SO1624 purU +0.6 2.5 formyltetrahydrofolate deformylase (NCBI ptt file) compare
SO1568 +0.6 1.1 hypothetical protein (NCBI ptt file) compare
SO0618 astA +0.6 3.8 arginine N-succinyltransferase (NCBI ptt file) compare
SO1268 +0.6 2.7 Glutamate--putrescine ligase (EC 6.3.1.11) (from data) compare
SO0347 +0.6 2.4 acyltransferase family protein (NCBI ptt file) compare
SO4689 +0.6 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO3194.1 +0.6 3.8 hypothetical peptide transporter (NCBI ptt file) compare
SO3325 +0.6 1.8 nrfJ-related protein (NCBI ptt file) compare
SO0451 +0.6 1.3 hypothetical protein (NCBI ptt file) compare
SO2564 +0.6 2.9 transglycosylase, Slt family (NCBI ptt file) compare
SO2200 +0.6 2.9 ribosomal protein S6 modification protein, putative (NCBI ptt file) compare
SO2639 +0.6 0.8 hypothetical protein (NCBI ptt file) compare
SO1695 +0.6 4.1 sensory box/GGDEF family protein (NCBI ptt file) compare
SO3108 +0.6 1.0 siroheme synthase, N-terminal component, putative (NCBI ptt file) compare
SO4484 +0.6 1.9 cytochrome c-type protein Shp (NCBI ptt file) compare
SO0466 +0.6 1.0 hypothetical protein (NCBI ptt file) compare
SO3203 +0.6 1.3 CheW domain protein (NCBI ptt file) compare
SO3708 +0.6 1.2 membrane protein, putative (NCBI ptt file) compare
SOA0012 umuC +0.6 4.1 umuC protein (NCBI ptt file) compare
SO1891 +0.5 2.8 3-oxoadipate CoA-succinyl transferase, beta subunit (NCBI ptt file) compare
SOA0011 +0.5 3.2 conserved hypothetical protein (NCBI ptt file) compare
SO3171 +0.5 2.4 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO2447 +0.5 1.6 channel protein, hemolysin III family subfamily (NCBI ptt file) compare
SO3983 +0.5 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO2380 +0.5 3.2 RecQ domain protein (NCBI ptt file) compare
SO_A0111 +0.5 0.8 no description compare
SO2395 +0.5 2.1 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
SO2906 +0.5 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO2228 +0.5 1.4 CBS domain protein (NCBI ptt file) compare
SO_3118 +0.5 1.8 no description compare
SO0877 +0.5 2.2 acetyltransferase, GNAT family (NCBI ptt file) compare
SO0044 +0.5 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO3408 +0.5 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO2617 udk +0.5 0.7 uridine kinase (NCBI ptt file) compare
SO1378 +0.5 1.2 ThiJ/PfpI family protein (NCBI ptt file) compare
SO1565 +0.5 2.3 magnesium transporter, putative (NCBI ptt file) compare
SO3581 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
SO_2786 +0.5 1.5 no description compare
SO3886 +0.5 1.3 hypothetical protein (NCBI ptt file) compare
SO3173 +0.5 3.1 UDP-galactose 4-epimerase, putative (NCBI ptt file) compare
SO1853 +0.5 3.3 ABC transporter, ATP-binding protein (NCBI ptt file) compare
SO2438 +0.5 1.7 transcriptional regulator, LysR family (NCBI ptt file) compare
SO0086 +0.5 0.7 hypothetical protein (NCBI ptt file) compare
SO4007 +0.5 1.1 predicted chromosome partitioning protein (with smc-like SO4008) (from data) compare
SO0301 +0.5 2.0 hypothetical methyltransferase (NCBI ptt file) compare
SO1107 nqrE-2 +0.5 0.9 NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE (NCBI ptt file) compare
SO4188 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
SO4337 +0.5 2.1 transcriptional regulator, AsnC family (NCBI ptt file) compare
SO0937 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
SO1190 +0.5 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO3841 +0.5 0.8 hypothetical protein (NCBI ptt file) compare
SOA0085 +0.5 1.1 ISSod8, transposase (NCBI ptt file) compare
SO1570 +0.5 3.3 GGDEF domain protein (NCBI ptt file) compare
SO3117 +0.5 1.8 thioredoxin, putative (NCBI ptt file) compare
SO1995 +0.5 2.0 peptidyl-prolyl cis-trans isomerase, FkbP family (NCBI ptt file) compare
SO3723 cysC +0.5 1.3 adenylylsulfate kinase (NCBI ptt file) compare
SO0313 potE +0.5 3.6 putrescine-ornithine antiporter (NCBI ptt file) compare
SO0964 +0.5 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO3640 apaG +0.5 1.2 apaG protein (NCBI ptt file) compare
SO2016 htpG +0.5 1.1 heat shock protein HtpG (NCBI ptt file) compare
SO3054 +0.5 1.6 metallo-beta-lactamase family protein (NCBI ptt file) compare
SO3364 +0.5 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO2577 minD +0.5 2.1 septum site-determining protein MinD (NCBI ptt file) compare
SO1245 +0.5 1.8 membrane protein, putative (NCBI ptt file) compare
SO1990 +0.4 2.1 hypothetical protein (NCBI ptt file) compare
SO2311 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
SO1780 mtrF +0.4 2.4 decaheme cytochrome c MtrF (NCBI ptt file) compare
SO1487 +0.4 1.6 hypothetical protein (NCBI ptt file) compare
SO2157 +0.4 1.6 hypothetical protein (NCBI ptt file) compare
SO1537 +0.4 1.5 hypothetical protein (NCBI ptt file) compare
SO2529 +0.4 2.3 hypothetical protein (NCBI ptt file) compare
SO1699 +0.4 4.0 transcriptional regulator (NCBI ptt file) compare
SO3921 hydB +0.4 0.8 periplasmic Fe hydrogenase, small subunit (NCBI ptt file) compare
SO1341 nadB +0.4 1.2 L-aspartate oxidase (NCBI ptt file) compare
SO1603 +0.4 2.9 transcriptional regulator, putative (NCBI ptt file) compare
SO1317 +0.4 1.3 hypothetical protein (NCBI ptt file) compare
SO4134 +0.4 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO0899 +0.4 2.6 glyoxalase family protein (NCBI ptt file) compare
SO0272 cinA +0.4 2.0 competence/damage-inducible protein CinA (NCBI ptt file) compare
SO3520 +0.4 2.9 type IV pilus biogenesis protein, putative (NCBI ptt file) compare
SO2902 +0.4 2.0 hypothetical protein (NCBI ptt file) compare
SO2833 nrdG +0.4 1.9 anaerobic ribonucleoside-triphosphate reductase activating protein (NCBI ptt file) compare
SO2248 sdaA +0.4 2.2 L-serine dehydratase 1 (NCBI ptt file) compare
SO1921 +0.4 0.9 hypothetical protein (NCBI ptt file) compare
SO0430 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO2525.1 +0.4 1.3 hypothetical protein (NCBI ptt file) compare
SO0041 +0.4 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO0045 +0.4 0.6 Rrf2 family protein (NCBI ptt file) compare
SOA0004 +0.4 2.3 type II DNA modification methyltransferase (NCBI ptt file) compare
SO0170 gspH +0.4 0.8 general secretion pathway protein H (NCBI ptt file) compare
SO3402 +0.4 0.7 hypothetical protein (NCBI ptt file) compare
SO1227 +0.4 2.6 conserved hypothetical protein (NCBI ptt file) compare
SO1256 +0.4 0.9 hypothetical 4-hydroxybenzoyl-CoA thioesterase (NCBI ptt file) compare
SO1404 +0.4 1.1 endoribonuclease L-PSP, putative (NCBI ptt file) compare
SO2850 +0.4 1.9 acetyltransferase, GNAT family (NCBI ptt file) compare
SO0163 hslO +0.4 2.4 chaperonin HslO (NCBI ptt file) compare
SO3288 +0.4 1.8 transglycosylase, Slt family (NCBI ptt file) compare
SO3367 +0.4 1.4 conserved hypothetical protein TIGR00091 (NCBI ptt file) compare
SO4408 bipA +0.4 3.0 virulence regulator BipA (NCBI ptt file) compare
SO0165 gspC +0.4 1.2 general secretion pathway protein C (NCBI ptt file) compare
SO4727 +0.4 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO2727 +0.4 0.9 cytochrome c3 (NCBI ptt file) compare
SO0198 +0.4 3.0 transcriptional regulator, TetR family (NCBI ptt file) compare
SO1742 +0.4 1.1 hypothetical 3-oxoacyl-acyl carrier protein synthase III (NCBI ptt file) compare
SO3125 +0.4 1.6 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) compare
SO1913 +0.4 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO0314 speF +0.4 3.8 ornithine decarboxylase, inducible (NCBI ptt file) compare
SO2397 +0.4 1.1 oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file) compare
SO4470 +0.4 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO0701 +0.4 2.2 transcriptional regulator, LysR family (NCBI ptt file) compare
SO0881 +0.4 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO0205 +0.4 2.5 hypothetical protein (NCBI ptt file) compare
SO_3141 +0.4 0.7 no description compare
SO3816 +0.4 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO3516 +0.4 2.6 transcriptional regulator, LacI family (NCBI ptt file) compare
SO1808 pspB +0.4 0.5 phage shock protein B (NCBI ptt file) compare
SO3320 +0.4 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO2901 fabH-2 +0.4 1.8 3-oxoacyl-(acyl-carrier-protein) synthase III (NCBI ptt file) compare
SO4587 +0.4 1.8 conserved hypothetical protein TIGR00095 (NCBI ptt file) compare
SO3978 +0.4 2.0 hypothetical EAL and a GGDEF domain protein (NCBI ptt file) compare
SO_A0006 +0.4 2.5 ParA family protein (NCBI) compare
SO_2818 +0.4 1.6 no description compare
SO3881 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
SO3887 +0.4 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO_3137 +0.4 1.3 no description compare
SO_0589 +0.4 1.2 no description compare
SO1518 +0.4 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO3787 +0.4 1.0 hypothetical protein (NCBI ptt file) compare
SO2128 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
SO0353 +0.4 2.4 TPR domain protein (NCBI ptt file) compare
SO2991 +0.4 1.2 conserved hypothetical protein (NCBI ptt file) compare


Specific Phenotypes

For 1 genes in this experiment