Experiment set16IT077 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrite; anaerobic; with copper; sample3

200 most important genes:

  gene name fitness t score description  
Psest_0155 -5.3 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2988 -5.2 -8.7 aspartate kinase, monofunctional class compare
Psest_0828 -5.0 -8.2 Nitric oxide reductase activation protein compare
Psest_0508 -4.9 -6.7 gamma-glutamyl phosphate reductase compare
Psest_2590 -4.9 -1.7 3-isopropylmalate dehydratase, small subunit compare
Psest_3864 -4.7 -15.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3648 -4.6 -4.5 anthranilate phosphoribosyltransferase compare
Psest_3650 -4.6 -10.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3299 -4.6 -14.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0152 -4.6 -7.4 Imidazoleglycerol-phosphate dehydratase compare
Psest_3866 -4.6 -20.0 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2584 -4.5 -3.1 Phosphoribosylanthranilate isomerase compare
Psest_3298 -4.4 -13.1 histidinol dehydrogenase compare
Psest_1473 -4.3 -5.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2591 -4.3 -4.1 3-isopropylmalate dehydratase, large subunit compare
Psest_0826 -4.2 -11.2 Cytochrome c compare
Psest_3944 -4.2 -6.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2578 -4.2 -15.3 O-succinylhomoserine sulfhydrylase compare
Psest_2067 -4.2 -3.8 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0279 -4.2 -8.3 methionine biosynthesis protein MetW compare
Psest_3943 -4.2 -5.6 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0325 -4.1 -14.8 Putative threonine efflux protein compare
Psest_0280 -4.1 -16.0 homoserine O-acetyltransferase compare
Psest_0814 -4.1 -3.9 MoxR-like ATPases compare
Psest_3384 -4.0 -5.5 glutamate 5-kinase compare
Psest_0827 -4.0 -19.0 Nitric oxide reductase large subunit compare
Psest_0954 -3.8 -10.9 Fe-S oxidoreductase compare
Psest_2234 -3.6 -14.6 oxygen-independent coproporphyrinogen III oxidase compare
Psest_0953 -3.6 -11.5 iron-sulfur cluster-binding protein compare
Psest_2589 -3.4 -11.8 3-isopropylmalate dehydrogenase compare
Psest_3649 -3.4 -11.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0952 -3.3 -4.3 Uncharacterized conserved protein compare
Psest_0313 -3.2 -3.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0687 -3.2 -9.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3647 -3.0 -2.1 Indole-3-glycerol phosphate synthase compare
Psest_0830 -3.0 -11.7 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0153 -3.0 -12.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0799 -2.9 -8.4 Uncharacterized protein involved in response to NO compare
Psest_1509 -2.8 -10.0 quinolinate synthetase complex, A subunit compare
Psest_2329 -2.8 -17.1 Transcriptional regulator compare
Psest_0718 -2.8 -5.7 nicotinate-nucleotide pyrophosphorylase compare
Psest_0958 -2.6 -6.9 Oligoketide cyclase/lipid transport protein compare
Psest_0813 -2.5 -3.8 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_0393 -2.5 -8.5 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3843 -2.3 -12.0 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3322 -2.3 -16.5 TIGR02099 family protein compare
Psest_3818 -2.3 -8.7 endoribonuclease L-PSP, putative compare
Psest_0790 -2.2 -4.0 Uncharacterized protein conserved in bacteria compare
Psest_0326 -2.2 -7.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0327 -2.2 -5.0 Transcriptional regulator compare
Psest_1022 -2.2 -10.4 Thiol:disulfide interchange protein compare
Psest_1295 -2.0 -4.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2579 -2.0 -1.4 amidophosphoribosyltransferase compare
Psest_1772 -2.0 -5.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2490 -2.0 -8.4 succinyl-CoA synthetase, alpha subunit compare
Psest_2088 -1.9 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0820 -1.9 -7.5 hypothetical protein compare
Psest_1656 -1.9 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3998 -1.8 -7.5 glutamate--cysteine ligase compare
Psest_1814 -1.8 -12.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1657 -1.8 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0529 -1.8 -7.6 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0144 -1.8 -7.6 Fe-S cluster protector protein compare
Psest_1012 -1.8 -3.2 Signal transduction histidine kinase compare
Psest_0466 -1.7 -3.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2809 -1.7 -4.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1496 -1.7 -1.3 Holliday junction DNA helicase, RuvA subunit compare
Psest_3092 -1.7 -1.9 ribonuclease III, bacterial compare
Psest_0297 -1.7 -4.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1082 -1.7 -4.2 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1659 -1.7 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3766 -1.7 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_0062 -1.7 -2.9 tryptophan synthase, alpha subunit compare
Psest_3297 -1.6 -10.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0170 -1.6 -5.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_2862 -1.6 -8.8 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_1663 -1.6 -2.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0740 -1.6 -2.7 Transcriptional regulator compare
Psest_2104 -1.6 -1.7 IscR-regulated protein YhgI compare
Psest_2491 -1.5 -4.9 succinyl-CoA synthetase, beta subunit compare
Psest_3323 -1.5 -5.8 ribonuclease, Rne/Rng family compare
Psest_4345 -1.5 -7.4 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_0822 -1.5 -4.5 Transcriptional regulators compare
Psest_0810 -1.5 -7.0 uroporphyrin-III C-methyltransferase compare
Psest_0823 -1.5 -3.5 Transcriptional regulators compare
Psest_0815 -1.4 -10.2 Cytochrome c, mono- and diheme variants compare
Psest_0811 -1.4 -8.4 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_3921 -1.4 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0817 -1.4 -7.6 Ethylbenzene dehydrogenase. compare
Psest_1920 -1.4 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3226 -1.4 -1.3 Predicted membrane protein compare
Psest_0821 -1.4 -7.9 Cytochrome D1 heme domain. compare
Psest_1505 -1.4 -2.1 Organic radical activating enzymes compare
Psest_4298 -1.4 -1.1 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0998 -1.3 -2.0 poly(A) polymerase compare
Psest_0442 -1.3 -2.6 ATPases of the AAA+ class compare
Psest_1724 -1.3 -3.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2293 -1.3 -1.8 hypothetical protein compare
Psest_0609 -1.3 -2.0 hypothetical protein compare
Psest_1655 -1.3 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1813 -1.3 -6.8 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2561 -1.3 -1.2 hypothetical protein compare
Psest_1249 -1.3 -4.4 serine O-acetyltransferase compare
Psest_0796 -1.2 -3.7 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_2285 -1.2 -2.8 ATP-dependent protease La compare
Psest_1292 -1.2 -6.1 monothiol glutaredoxin, Grx4 family compare
Psest_3174 -1.2 -8.4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3044 -1.2 -4.7 deoxycytidine triphosphate deaminase compare
Psest_4364 -1.2 -4.2 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_2714 -1.2 -1.5 7-cyano-7-deazaguanine reductase compare
Psest_0193 -1.2 -1.8 conserved hypothetical protein compare
Psest_1238 -1.2 -5.4 Predicted membrane protein/domain compare
Psest_3317 -1.1 -4.1 Phosphotransferase System HPr (HPr) Family compare
Psest_3145 -1.1 -1.2 hypothetical protein compare
Psest_0708 -1.1 -1.2 outer membrane assembly lipoprotein YfiO compare
Psest_3045 -1.1 -1.5 Cold shock proteins compare
Psest_2023 -1.1 -2.6 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_0030 -1.1 -2.7 Putative NADH-flavin reductase compare
Psest_0520 -1.1 -0.9 hypothetical protein compare
Psest_0951 -1.1 -6.2 FAD/FMN-containing dehydrogenases compare
Psest_3862 -1.1 -7.0 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0359 -1.0 -1.8 Transcriptional regulators compare
Psest_4219 -1.0 -0.9 DNA polymerase I compare
Psest_0833 -1.0 -3.3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
Psest_0296 -1.0 -5.1 glutathione synthetase, prokaryotic compare
Psest_2324 -1.0 -6.0 hypothetical protein compare
Psest_0844 -1.0 -1.7 High-affinity Fe2+/Pb2+ permease compare
Psest_0831 -1.0 -1.1 hypothetical protein compare
Psest_2325 -1.0 -4.6 alpha-L-glutamate ligase-related protein compare
Psest_2786 -0.9 -1.2 Domain of unknown function (DUF3597). compare
Psest_2967 -0.9 -2.4 flagellar basal-body rod protein FlgC compare
Psest_3531 -0.9 -1.2 Peptidase propeptide and YPEB domain. compare
Psest_2682 -0.9 -3.5 fumarate hydratase, class II compare
Psest_0722 -0.9 -4.0 Predicted ATPase compare
Psest_1837 -0.9 -2.8 Endoglucanase compare
Psest_3745 -0.9 -2.5 Uncharacterized enzyme of heme biosynthesis compare
Psest_3180 -0.9 -5.7 Exonuclease I compare
Psest_2276 -0.9 -3.8 Aldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
Psest_0187 -0.9 -3.3 Metal-dependent hydrolase compare
Psest_3937 -0.9 -1.3 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3736 -0.9 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1818 -0.9 -5.6 GDP-mannose 4,6-dehydratase compare
Psest_0794 -0.9 -7.3 parallel beta-helix repeat (two copies) compare
Psest_1700 -0.9 -2.8 Transcriptional regulator compare
Psest_0955 -0.9 -2.9 D,L-lactate:H+ symporter (from data) compare
Psest_1642 -0.9 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1242 -0.9 -1.6 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_4363 -0.9 -4.2 ATPases involved in chromosome partitioning compare
Psest_2716 -0.9 -1.9 ABC-type multidrug transport system, ATPase component compare
Psest_0334 -0.9 -2.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0182 -0.9 -3.4 glycine cleavage system H protein compare
Psest_3183 -0.9 -3.8 hypothetical protein compare
Psest_3720 -0.9 -5.5 penicillin-binding protein, 1A family compare
Psest_0845 -0.9 -0.6 hypothetical protein compare
Psest_2507 -0.9 -6.4 Flagellin and related hook-associated proteins compare
Psest_2810 -0.9 -2.6 5'/3'-nucleotidase SurE compare
Psest_2744 -0.9 -1.5 Uncharacterized conserved protein compare
Psest_2580 -0.8 -3.7 Uncharacterized membrane protein, required for colicin V production compare
Psest_1417 -0.8 -1.6 hypothetical protein compare
Psest_3042 -0.8 -0.8 Nitrate reductase cytochrome c-type subunit compare
Psest_2798 -0.8 -2.6 Truncated hemoglobins compare
Psest_0835 -0.8 -6.5 Collagenase and related proteases compare
Psest_0498 -0.8 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_3188 -0.8 -2.7 hypothetical protein compare
Psest_1661 -0.8 -0.5 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3565 -0.8 -1.1 hypothetical protein compare
Psest_0218 -0.8 -1.9 Acyl-CoA hydrolase compare
Psest_3419 -0.8 -3.9 Predicted transcriptional regulators compare
Psest_1825 -0.8 -5.1 Predicted nucleoside-diphosphate sugar epimerases compare
Psest_2864 -0.8 -2.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3678 -0.8 -3.0 acyl-phosphate glycerol 3-phosphate acyltransferase compare
Psest_0462 -0.8 -6.7 Lipid A core - O-antigen ligase and related enzymes compare
Psest_0537 -0.8 -0.9 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0632 -0.8 -3.0 hypothetical protein compare
Psest_1819 -0.8 -6.2 Nucleoside-diphosphate-sugar epimerases compare
Psest_1230 -0.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_1623 -0.8 -2.3 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3177 -0.8 -1.1 hypothetical protein compare
Psest_2308 -0.8 -0.8 Predicted Fe-S protein compare
Psest_4316 -0.7 -2.2 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_1161 -0.7 -2.1 E3 Ubiquitin ligase. compare
Psest_2935 -0.7 -1.3 hypothetical protein compare
Psest_0416 -0.7 -3.1 hypothetical protein compare
Psest_3301 -0.7 -2.3 Predicted transcriptional regulator, BolA superfamily compare
Psest_0489 -0.7 -0.5 phosphoserine phosphatase SerB compare
Psest_4314 -0.7 -2.9 ABC-type metal ion transport system, ATPase component compare
Psest_0031 -0.7 -1.1 Uncharacterized conserved protein compare
Psest_0601 -0.7 -1.6 hypothetical protein compare
Psest_3113 -0.7 -1.2 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1031 -0.7 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_1679 -0.7 -1.3 ribonuclease, Rne/Rng family compare
Psest_0349 -0.7 -3.6 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_2667 -0.7 -2.5 Uncharacterized protein involved in propionate catabolism compare
Psest_0793 -0.7 -5.5 Nitrous oxide reductase compare
Psest_3136 -0.7 -3.0 Putative Mg2+ and Co2+ transporter CorB compare
Psest_1824 -0.7 -1.5 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1248 -0.7 -2.6 RNA methyltransferase, TrmH family, group 1 compare
Psest_0792 -0.7 -5.5 Regulator of nitric oxide reductase transcription compare
Psest_0719 -0.7 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_3438 -0.7 -3.7 Glutamate dehydrogenase/leucine dehydrogenase compare


Specific Phenotypes

For 1 genes in this experiment

For metal limitation Sodium nitrite in Pseudomonas stutzeri RCH2

For metal limitation Sodium nitrite across organisms