Experiment set16IT077 for Pseudomonas stutzeri RCH2
Lactate-nitrite; anaerobic; with copper; sample3
Group: metal limitationMedia: RCH2_Lactate_1_M_Fe-Cu + Sodium nitrite (20 mM) + Copper (II) sulfate pentahydrate (1 uM), pH=7
Culturing: psRCH2_ML7e, hungate, Anaerobic, at 30 (C), shaken=200 rpm
Growth: about 4.7 generations
By: Mike Adams on 5/12/2014
Specific Phenotypes
For 1 genes in this experiment
For metal limitation Sodium nitrite in Pseudomonas stutzeri RCH2
For metal limitation Sodium nitrite across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Coenzyme B12 biosynthesis | 1 |
| Dissimilatory nitrite reductase | 1 |
| Experimental tye | 1 |
| Heme and Siroheme Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| siroheme biosynthesis | 4 | 4 | 3 |
| factor 430 biosynthesis | 7 | 3 | 3 |
| cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) | 15 | 4 | 3 |
| cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) | 13 | 3 | 2 |
| adenosylcobalamin biosynthesis I (anaerobic) | 36 | 20 | 3 |
| adenosylcobalamin biosynthesis II (aerobic) | 33 | 21 | 2 |