Experiment set16IT074 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrite; anaerobic; sample3

200 most important genes:

  gene name fitness t score description  
Psest_0152 -5.2 -8.0 Imidazoleglycerol-phosphate dehydratase compare
Psest_3866 -4.9 -16.6 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3864 -4.7 -14.9 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3944 -4.6 -6.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2578 -4.5 -12.5 O-succinylhomoserine sulfhydrylase compare
Psest_3648 -4.4 -4.3 anthranilate phosphoribosyltransferase compare
Psest_3299 -4.4 -13.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3650 -4.4 -10.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0953 -4.3 -12.8 iron-sulfur cluster-binding protein compare
Psest_0326 -4.2 -16.2 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_1473 -4.2 -5.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0508 -4.2 -8.4 gamma-glutamyl phosphate reductase compare
Psest_3298 -4.2 -13.4 histidinol dehydrogenase compare
Psest_0325 -4.0 -14.6 Putative threonine efflux protein compare
Psest_0279 -4.0 -7.6 methionine biosynthesis protein MetW compare
Psest_2584 -4.0 -4.7 Phosphoribosylanthranilate isomerase compare
Psest_0687 -3.9 -8.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2988 -3.8 -10.3 aspartate kinase, monofunctional class compare
Psest_0155 -3.8 -8.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0828 -3.8 -8.9 Nitric oxide reductase activation protein compare
Psest_2591 -3.8 -4.0 3-isopropylmalate dehydratase, large subunit compare
Psest_2590 -3.7 -1.7 3-isopropylmalate dehydratase, small subunit compare
Psest_0826 -3.7 -11.3 Cytochrome c compare
Psest_0827 -3.6 -17.7 Nitric oxide reductase large subunit compare
Psest_0954 -3.6 -8.5 Fe-S oxidoreductase compare
Psest_3384 -3.6 -6.4 glutamate 5-kinase compare
Psest_0952 -3.6 -3.4 Uncharacterized conserved protein compare
Psest_0280 -3.6 -15.3 homoserine O-acetyltransferase compare
Psest_0718 -3.4 -5.1 nicotinate-nucleotide pyrophosphorylase compare
Psest_3943 -3.4 -5.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0814 -3.4 -3.9 MoxR-like ATPases compare
Psest_0359 -3.3 -4.1 Transcriptional regulators compare
Psest_2234 -3.2 -13.8 oxygen-independent coproporphyrinogen III oxidase compare
Psest_2589 -3.2 -11.0 3-isopropylmalate dehydrogenase compare
Psest_0830 -3.0 -11.5 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3647 -2.9 -2.0 Indole-3-glycerol phosphate synthase compare
Psest_1509 -2.9 -9.3 quinolinate synthetase complex, A subunit compare
Psest_0313 -2.8 -4.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3818 -2.7 -8.7 endoribonuclease L-PSP, putative compare
Psest_0153 -2.6 -11.4 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2067 -2.5 -2.6 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2329 -2.4 -14.6 Transcriptional regulator compare
Psest_1022 -2.4 -9.9 Thiol:disulfide interchange protein compare
Psest_3649 -2.4 -10.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0327 -2.3 -4.7 Transcriptional regulator compare
Psest_0813 -2.3 -3.9 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_0601 -2.3 -4.8 hypothetical protein compare
Psest_0790 -2.2 -4.8 Uncharacterized protein conserved in bacteria compare
Psest_0466 -2.2 -3.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3998 -2.2 -7.7 glutamate--cysteine ligase compare
Psest_3843 -2.1 -11.1 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3129 -2.0 -1.3 tyrosine recombinase XerD compare
Psest_0799 -2.0 -3.6 Uncharacterized protein involved in response to NO compare
Psest_0958 -2.0 -6.1 Oligoketide cyclase/lipid transport protein compare
Psest_0170 -2.0 -7.6 5,10-methenyltetrahydrofolate synthetase compare
Psest_1417 -1.9 -2.4 hypothetical protein compare
Psest_2579 -1.9 -1.3 amidophosphoribosyltransferase compare
Psest_0393 -1.9 -4.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1505 -1.9 -2.1 Organic radical activating enzymes compare
Psest_0529 -1.8 -9.1 Putative Mg2+ and Co2+ transporter CorC compare
Psest_1772 -1.8 -4.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0062 -1.8 -2.1 tryptophan synthase, alpha subunit compare
Psest_2104 -1.8 -1.2 IscR-regulated protein YhgI compare
Psest_1656 -1.8 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3322 -1.8 -12.9 TIGR02099 family protein compare
Psest_0193 -1.8 -2.2 conserved hypothetical protein compare
Psest_1997 -1.7 -2.2 6-phosphogluconolactonase compare
Psest_3297 -1.7 -9.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1814 -1.7 -11.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1659 -1.6 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0855 -1.6 -4.4 NAD-dependent aldehyde dehydrogenases compare
Psest_1813 -1.6 -9.2 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1496 -1.6 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_4345 -1.6 -6.8 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1295 -1.6 -4.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1292 -1.6 -7.0 monothiol glutaredoxin, Grx4 family compare
Psest_2088 -1.5 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3226 -1.5 -1.2 Predicted membrane protein compare
Psest_4098 -1.5 -2.9 Superfamily I DNA and RNA helicases compare
Psest_1139 -1.4 -4.9 PAS domain S-box compare
Psest_2324 -1.4 -9.0 hypothetical protein compare
Psest_0144 -1.4 -6.6 Fe-S cluster protector protein compare
Psest_0334 -1.4 -3.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1249 -1.4 -4.3 serine O-acetyltransferase compare
Psest_2293 -1.4 -1.6 hypothetical protein compare
Psest_0822 -1.4 -3.8 Transcriptional regulators compare
Psest_2308 -1.4 -1.2 Predicted Fe-S protein compare
Psest_1238 -1.4 -5.3 Predicted membrane protein/domain compare
Psest_2490 -1.4 -6.1 succinyl-CoA synthetase, alpha subunit compare
Psest_0823 -1.3 -4.1 Transcriptional regulators compare
Psest_0296 -1.3 -6.0 glutathione synthetase, prokaryotic compare
Psest_1920 -1.3 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2491 -1.3 -4.3 succinyl-CoA synthetase, beta subunit compare
Psest_2809 -1.3 -3.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0821 -1.3 -7.9 Cytochrome D1 heme domain. compare
Psest_0817 -1.3 -6.0 Ethylbenzene dehydrogenase. compare
Psest_0955 -1.3 -4.7 D,L-lactate:H+ symporter (from data) compare
Psest_0297 -1.3 -3.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0257 -1.3 -2.5 Predicted Zn-dependent peptidases compare
Psest_2810 -1.3 -3.7 5'/3'-nucleotidase SurE compare
Psest_3921 -1.3 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_3937 -1.3 -2.0 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0811 -1.3 -7.7 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_0426 -1.3 -3.9 Transposase and inactivated derivatives compare
Psest_1663 -1.2 -2.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0959 -1.2 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3174 -1.2 -8.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2325 -1.2 -5.6 alpha-L-glutamate ligase-related protein compare
Psest_1695 -1.2 -2.2 Tfp pilus assembly protein PilZ compare
Psest_0951 -1.2 -6.8 FAD/FMN-containing dehydrogenases compare
Psest_2538 -1.2 -2.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0796 -1.2 -3.7 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_1809 -1.2 -7.2 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_4346 -1.2 -3.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1837 -1.2 -4.4 Endoglucanase compare
Psest_3145 -1.2 -1.8 hypothetical protein compare
Psest_0810 -1.2 -6.4 uroporphyrin-III C-methyltransferase compare
Psest_2285 -1.2 -2.7 ATP-dependent protease La compare
Psest_0716 -1.2 -1.8 Protein of unknown function (DUF3094). compare
Psest_3908 -1.2 -1.5 Cytochrome c553 compare
Psest_3044 -1.2 -4.4 deoxycytidine triphosphate deaminase compare
Psest_3960 -1.2 -0.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2864 -1.2 -3.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3573 -1.1 -3.1 dTDP-4-dehydrorhamnose reductase compare
Psest_0815 -1.1 -8.1 Cytochrome c, mono- and diheme variants compare
Psest_0844 -1.1 -3.3 High-affinity Fe2+/Pb2+ permease compare
Psest_1655 -1.1 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3301 -1.1 -2.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_3045 -1.1 -2.3 Cold shock proteins compare
Psest_1679 -1.1 -1.5 ribonuclease, Rne/Rng family compare
Psest_4043 -1.1 -3.2 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3862 -1.1 -7.3 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0097 -1.1 -1.7 phosphonates metabolism transcriptional regulator PhnF compare
Psest_0999 -1.1 -1.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3809 -1.1 -3.5 hypothetical protein compare
Psest_3419 -1.1 -4.2 Predicted transcriptional regulators compare
Psest_2786 -1.1 -1.2 Domain of unknown function (DUF3597). compare
Psest_1012 -1.1 -2.7 Signal transduction histidine kinase compare
Psest_2744 -1.1 -1.7 Uncharacterized conserved protein compare
Psest_3146 -1.1 -1.7 hypothetical protein compare
Psest_0462 -1.1 -9.3 Lipid A core - O-antigen ligase and related enzymes compare
Psest_1657 -1.1 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_4314 -1.0 -3.7 ABC-type metal ion transport system, ATPase component compare
Psest_1700 -1.0 -2.4 Transcriptional regulator compare
Psest_0722 -1.0 -3.9 Predicted ATPase compare
Psest_3744 -1.0 -4.0 Disulfide bond formation protein DsbB compare
Psest_0445 -1.0 -7.2 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0845 -1.0 -0.6 hypothetical protein compare
Psest_0349 -1.0 -3.8 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_0836 -1.0 -4.7 Collagenase and related proteases compare
Psest_0794 -1.0 -8.0 parallel beta-helix repeat (two copies) compare
Psest_3720 -1.0 -6.2 penicillin-binding protein, 1A family compare
Psest_1888 -1.0 -0.7 Sua5/YciO/YrdC/YwlC family protein compare
Psest_3180 -1.0 -5.2 Exonuclease I compare
Psest_0013 -1.0 -2.7 Lauroyl/myristoyl acyltransferase compare
Psest_2935 -1.0 -2.0 hypothetical protein compare
Psest_2504 -1.0 -2.8 flagellar biosynthetic protein FliS compare
Psest_2304 -1.0 -1.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2850 -1.0 -1.1 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_4364 -0.9 -2.8 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_0684 -0.9 -4.9 GTP-binding protein HflX compare
Psest_3323 -0.9 -2.7 ribonuclease, Rne/Rng family compare
Psest_0608 -0.9 -5.4 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Psest_0852 -0.9 -4.0 glucose-6-phosphate 1-dehydrogenase compare
Psest_2973 -0.9 -3.4 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_0719 -0.9 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_0182 -0.9 -2.7 glycine cleavage system H protein compare
Psest_3155 -0.9 -2.7 hypothetical protein compare
Psest_0744 -0.9 -0.9 Uncharacterized conserved protein compare
Psest_2333 -0.9 -0.8 Protein of unknown function (DUF3359). compare
Psest_0820 -0.9 -3.4 hypothetical protein compare
Psest_1818 -0.9 -5.7 GDP-mannose 4,6-dehydratase compare
Psest_0309 -0.9 -0.7 RND family efflux transporter, MFP subunit compare
Psest_2976 -0.9 -1.3 hypothetical protein compare
Psest_2909 -0.9 -2.7 hypothetical protein compare
Psest_4316 -0.9 -2.8 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_0120 -0.9 -3.8 hypothetical protein compare
Psest_3177 -0.9 -1.4 hypothetical protein compare
Psest_4252 -0.9 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_3158 -0.9 -3.2 hypothetical protein compare
Psest_3438 -0.9 -4.9 Glutamate dehydrogenase/leucine dehydrogenase compare
Psest_2667 -0.9 -3.0 Uncharacterized protein involved in propionate catabolism compare
Psest_0843 -0.9 -4.6 hypothetical protein compare
Psest_0520 -0.9 -0.7 hypothetical protein compare
Psest_0294 -0.9 -2.2 Putative transcriptional regulator compare
Psest_0831 -0.9 -1.0 hypothetical protein compare
Psest_0015 -0.9 -2.0 Tetratricopeptide repeat. compare
Psest_3767 -0.9 -2.2 tyrosine recombinase XerC compare
Psest_2730 -0.8 -2.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0795 -0.8 -2.5 ABC-type multidrug transport system, ATPase component compare
Psest_0437 -0.8 -2.4 hypothetical protein compare
Psest_3317 -0.8 -3.3 Phosphotransferase System HPr (HPr) Family compare
Psest_2507 -0.8 -5.9 Flagellin and related hook-associated proteins compare
Psest_1870 -0.8 -1.1 Transcriptional regulators compare
Psest_2266 -0.8 -2.3 hypothetical protein compare
Psest_2323 -0.8 -5.1 Uncharacterized protein conserved in archaea compare
Psest_1810 -0.8 -6.2 UDP-N-acetylglucosamine 4,6-dehydratase compare
Psest_1055 -0.8 -5.1 Saccharopine dehydrogenase and related proteins compare
Psest_2651 -0.8 -0.5 DNA topoisomerase I, bacterial compare
Psest_0063 -0.8 -0.8 tryptophan synthase, beta subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments

For metal limitation Sodium nitrite across organisms