Experiment set16IT067 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrate; anaerobic; dichromate stress sample2

200 most important genes:

  gene name fitness t score description  
Psest_2088 -4.9 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_3480 -4.6 -3.9 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_4316 -4.0 -5.4 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_3484 -3.7 -6.1 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3168 -3.6 -3.8 Molybdopterin converting factor, large subunit compare
Psest_1961 -3.5 -13.6 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3650 -3.5 -13.1 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1473 -3.4 -6.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1957 -3.4 -17.5 outer membrane porin, OprD family. compare
Psest_2234 -3.3 -13.0 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3479 -3.3 -5.7 molybdenum cofactor synthesis domain compare
Psest_1115 -3.2 -3.6 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3648 -3.2 -8.3 anthranilate phosphoribosyltransferase compare
Psest_2584 -3.2 -6.3 Phosphoribosylanthranilate isomerase compare
Psest_3998 -3.2 -6.0 glutamate--cysteine ligase compare
Psest_0296 -3.1 -10.2 glutathione synthetase, prokaryotic compare
Psest_3486 -3.1 -20.4 respiratory nitrate reductase, alpha subunit compare
Psest_3482 -3.1 -6.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3485 -3.1 -14.0 nitrate reductase, beta subunit compare
Psest_0827 -3.0 -17.2 Nitric oxide reductase large subunit compare
Psest_0508 -2.9 -8.4 gamma-glutamyl phosphate reductase compare
Psest_3301 -2.9 -5.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_0830 -2.9 -10.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3483 -2.9 -9.5 respiratory nitrate reductase, gamma subunit compare
Psest_2988 -2.8 -8.5 aspartate kinase, monofunctional class compare
Psest_3647 -2.7 -1.9 Indole-3-glycerol phosphate synthase compare
Psest_1814 -2.7 -17.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3170 -2.7 -7.0 molybdenum cofactor biosynthesis protein MoaC compare
Psest_3384 -2.6 -8.1 glutamate 5-kinase compare
Psest_4314 -2.6 -6.0 ABC-type metal ion transport system, ATPase component compare
Psest_0826 -2.6 -9.0 Cytochrome c compare
Psest_0144 -2.6 -7.3 Fe-S cluster protector protein compare
Psest_0828 -2.6 -7.7 Nitric oxide reductase activation protein compare
Psest_2646 -2.5 -2.0 SOS regulatory protein LexA compare
Psest_2999 -2.5 -6.4 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_1292 -2.5 -7.6 monothiol glutaredoxin, Grx4 family compare
Psest_3721 -2.5 -8.7 Malic enzyme compare
Psest_0811 -2.4 -11.0 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_0817 -2.4 -11.0 Ethylbenzene dehydrogenase. compare
Psest_1231 -2.3 -7.6 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_0494 -2.3 -7.9 Rhodanese-related sulfurtransferase compare
Psest_0855 -2.3 -6.6 NAD-dependent aldehyde dehydrogenases compare
Psest_1496 -2.3 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_0823 -2.2 -4.7 Transcriptional regulators compare
Psest_0815 -2.2 -12.9 Cytochrome c, mono- and diheme variants compare
Psest_3000 -2.2 -6.1 molybdate ABC transporter, permease protein compare
Psest_0004 -2.1 -10.8 recF protein compare
Psest_0821 -2.1 -9.8 Cytochrome D1 heme domain. compare
Psest_1657 -2.1 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3230 -2.0 -4.5 Uncharacterized conserved protein compare
Psest_3649 -2.0 -7.0 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2067 -2.0 -2.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_4315 -2.0 -2.9 ABC-type metal ion transport system, permease component compare
Psest_2324 -2.0 -12.1 hypothetical protein compare
Psest_0837 -2.0 -4.1 Putative lipid carrier protein compare
Psest_2872 -2.0 -1.3 protein RecA compare
Psest_0820 -1.9 -5.0 hypothetical protein compare
Psest_1417 -1.9 -2.4 hypothetical protein compare
Psest_2090 -1.9 -3.7 Protein of unknown function (DUF2970). compare
Psest_3488 -1.9 -4.2 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3092 -1.9 -1.7 ribonuclease III, bacterial compare
Psest_3843 -1.8 -11.1 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1511 -1.8 -3.6 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3481 -1.8 -6.0 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_0449 -1.8 -8.9 Glutamine synthetase adenylyltransferase compare
Psest_3001 -1.8 -5.5 molybdenum ABC transporter, ATP-binding protein compare
Psest_1920 -1.7 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2026 -1.7 -9.5 Uncharacterized conserved protein compare
Psest_3731 -1.7 -9.6 exopolyphosphatase compare
Psest_2545 -1.7 -2.6 recombination protein RecR compare
Psest_3090 -1.7 -5.3 DNA repair protein RecO compare
Psest_0958 -1.7 -5.4 Oligoketide cyclase/lipid transport protein compare
Psest_2027 -1.7 -9.4 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_4310 -1.7 -2.2 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2647 -1.7 -3.3 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_3151 -1.6 -2.7 hypothetical protein compare
Psest_0852 -1.6 -5.0 glucose-6-phosphate 1-dehydrogenase compare
Psest_2718 -1.6 -1.4 hypothetical protein compare
Psest_1819 -1.6 -10.7 Nucleoside-diphosphate-sugar epimerases compare
Psest_4221 -1.6 -3.4 homoserine kinase, Neisseria type compare
Psest_4307 -1.5 -2.9 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_2579 -1.5 -1.8 amidophosphoribosyltransferase compare
Psest_1813 -1.5 -8.2 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3938 -1.5 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_0959 -1.5 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_0097 -1.5 -2.3 phosphonates metabolism transcriptional regulator PhnF compare
Psest_0822 -1.5 -4.0 Transcriptional regulators compare
Psest_0062 -1.5 -2.2 tryptophan synthase, alpha subunit compare
Psest_0212 -1.5 -1.9 exodeoxyribonuclease V, gamma subunit compare
Psest_2325 -1.5 -5.1 alpha-L-glutamate ligase-related protein compare
Psest_1656 -1.5 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2304 -1.5 -1.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2333 -1.5 -1.0 Protein of unknown function (DUF3359). compare
Psest_0814 -1.4 -2.2 MoxR-like ATPases compare
Psest_2945 -1.4 -0.9 septum site-determining protein MinC compare
Psest_2329 -1.4 -8.2 Transcriptional regulator compare
Psest_1837 -1.4 -4.8 Endoglucanase compare
Psest_2083 -1.4 -4.7 Putative sterol carrier protein compare
Psest_0836 -1.4 -5.7 Collagenase and related proteases compare
Psest_1640 -1.4 -6.9 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_2104 -1.4 -1.3 IscR-regulated protein YhgI compare
Psest_1354 -1.4 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0533 -1.3 -3.0 Sel1 repeat. compare
Psest_0799 -1.3 -2.7 Uncharacterized protein involved in response to NO compare
Psest_0835 -1.3 -8.6 Collagenase and related proteases compare
Psest_2259 -1.3 -7.4 excinuclease ABC, C subunit compare
Psest_2714 -1.3 -1.1 7-cyano-7-deazaguanine reductase compare
Psest_0842 -1.3 -1.2 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_1167 -1.3 -1.0 hypothetical protein compare
Psest_2278 -1.3 -3.1 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1873 -1.3 -2.4 Predicted permease, DMT superfamily compare
Psest_0152 -1.3 -4.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_1295 -1.2 -3.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1012 -1.2 -2.6 Signal transduction histidine kinase compare
Psest_1242 -1.2 -1.7 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1532 -1.2 -2.7 DNA recombination-dependent growth factor C compare
Psest_2744 -1.2 -1.7 Uncharacterized conserved protein compare
Psest_0719 -1.2 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_3400 -1.1 -1.3 Copper resistance protein D. compare
Psest_3944 -1.1 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0334 -1.1 -2.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0393 -1.1 -3.4 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1940 -1.1 -3.6 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_2756 -1.1 -0.9 hypothetical protein compare
Psest_1563 -1.1 -2.2 Protein of unknown function (DUF548). compare
Psest_0687 -1.1 -4.5 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1782 -1.1 -1.4 Predicted transcriptional regulators compare
Psest_3401 -1.1 -5.3 DNA repair protein RadA compare
Psest_3129 -1.1 -0.9 tyrosine recombinase XerD compare
Psest_0516 -1.1 -5.2 D-alanyl-D-alanine carboxypeptidase compare
Psest_0175 -1.1 -4.4 Xaa-Pro aminopeptidase compare
Psest_0164 -1.1 -0.7 Glutaredoxin, GrxC family compare
Psest_1248 -1.1 -4.3 RNA methyltransferase, TrmH family, group 1 compare
Psest_3433 -1.1 -6.0 ATP-binding cassette protein, ChvD family compare
Psest_1822 -1.1 -5.2 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0312 -1.1 -4.0 Superfamily II DNA and RNA helicases compare
Psest_1655 -1.1 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1659 -1.1 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2253 -1.1 -1.9 small redox-active disulfide protein 2 compare
Psest_3339 -1.0 -3.2 Signal transduction histidine kinase compare
Psest_4085 -1.0 -6.3 Biotin carboxylase compare
Psest_3576 -1.0 -7.8 excinuclease ABC, A subunit compare
Psest_2975 -1.0 -1.8 tRNA_Arg_CCT compare
Psest_0810 -1.0 -3.9 uroporphyrin-III C-methyltransferase compare
Psest_3298 -1.0 -5.6 histidinol dehydrogenase compare
Psest_0956 -1.0 -5.6 Transcriptional regulators compare
Psest_0632 -1.0 -2.4 hypothetical protein compare
Psest_2557 -1.0 -1.3 Protein of unknown function (DUF2474). compare
Psest_1944 -1.0 -7.2 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form (from data) compare
Psest_3117 -1.0 -2.6 electron transport complex, RnfABCDGE type, E subunit compare
Psest_4098 -1.0 -2.2 Superfamily I DNA and RNA helicases compare
Psest_3174 -1.0 -7.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_0207 -1.0 -3.0 hypothetical protein compare
Psest_0013 -1.0 -3.1 Lauroyl/myristoyl acyltransferase compare
Psest_0794 -1.0 -7.3 parallel beta-helix repeat (two copies) compare
Psest_0153 -1.0 -6.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_4219 -1.0 -1.1 DNA polymerase I compare
Psest_1472 -1.0 -5.0 Protein of unknown function (DUF3108). compare
Psest_1052 -1.0 -3.1 Uncharacterized protein involved in chromosome partitioning compare
Psest_0537 -1.0 -1.4 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_4252 -1.0 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0346 -1.0 -1.5 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_3862 -1.0 -5.3 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2538 -1.0 -1.6 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_4280 -1.0 -2.6 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_0795 -0.9 -2.2 ABC-type multidrug transport system, ATPase component compare
Psest_3275 -0.9 -2.8 Stringent starvation protein B compare
Psest_2460 -0.9 -1.5 hypothetical protein compare
Psest_4084 -0.9 -5.6 oxaloacetate decarboxylase alpha subunit compare
Psest_2566 -0.9 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_3536 -0.9 -1.1 hypothetical protein compare
Psest_2136 -0.9 -2.1 Predicted homoserine dehydrogenase compare
Psest_0809 -0.9 -5.2 Cytochrome c, mono- and diheme variants compare
Psest_1498 -0.9 -1.5 tol-pal system-associated acyl-CoA thioesterase compare
Psest_0196 -0.9 -6.1 Uncharacterized membrane protein, required for spore maturation in B.subtilis. compare
Psest_3317 -0.9 -2.4 Phosphotransferase System HPr (HPr) Family compare
Psest_1815 -0.9 -5.3 pseudaminic acid synthase compare
Psest_3762 -0.9 -2.7 iron donor protein CyaY compare
Psest_4010 -0.9 -1.1 peroxiredoxin, OsmC subfamily compare
Psest_4396 -0.9 -4.0 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0189 -0.9 -3.9 Negative regulator of beta-lactamase expression compare
Psest_3761 -0.9 -2.2 Transcription elongation factor compare
Psest_2809 -0.9 -1.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2967 -0.9 -1.6 flagellar basal-body rod protein FlgC compare
Psest_3720 -0.9 -5.6 penicillin-binding protein, 1A family compare
Psest_0442 -0.9 -2.0 ATPases of the AAA+ class compare
Psest_0962 -0.9 -4.2 DNA repair protein RecN compare
Psest_2285 -0.9 -2.0 ATP-dependent protease La compare
Psest_2029 -0.9 -5.0 Putative arginyl-tRNA:protein arginylyltransferase compare
Psest_2973 -0.9 -2.8 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_4060 -0.9 -4.7 sulfate/thiosulfate-binding protein compare
Psest_1707 -0.8 -3.0 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3958 -0.8 -2.0 Predicted Fe-S-cluster oxidoreductase compare
Psest_3112 -0.8 -2.6 electron transport complex, RnfABCDGE type, A subunit compare
Psest_4346 -0.8 -3.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3795 -0.8 -3.7 Glycine/D-amino acid oxidases (deaminating) compare
Psest_3936 -0.8 -2.7 ATP-dependent protease HslVU, peptidase subunit compare
Psest_3113 -0.8 -1.2 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1812 -0.8 -4.3 pseudaminic acid CMP-transferase compare
Psest_3299 -0.8 -5.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare


Specific Phenotypes

For 12 genes in this experiment

For stress Potassium dichromate in Pseudomonas stutzeri RCH2

For stress Potassium dichromate across organisms