Experiment set16IT067 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrate; anaerobic; dichromate stress sample2

200 most detrimental genes:

  gene name fitness t score description  
Psest_0511 +1.9 2.8 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3850 +1.8 1.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3700 +1.8 3.0 hypothetical protein compare
Psest_3489 +1.7 9.6 hypothetical protein compare
Psest_1179 +1.6 3.1 2-hydroxy-3-oxopropionate reductase compare
Psest_3039 +1.6 1.3 periplasmic nitrate reductase, NapE protein compare
Psest_3573 +1.5 3.9 dTDP-4-dehydrorhamnose reductase compare
Psest_2726 +1.4 2.9 Rhodanese-related sulfurtransferase compare
Psest_4274 +1.4 4.1 hypothetical protein compare
Psest_1643 +1.4 1.6 hypothetical protein compare
Psest_3100 +1.4 6.2 RNA polymerase sigma factor RpoE compare
Psest_1999 +1.3 1.4 pseudouridine synthase compare
Psest_0325 +1.3 10.1 Putative threonine efflux protein compare
Psest_0066 +1.2 2.9 Protein of unknown function (DUF3060). compare
Psest_1468 +1.2 3.1 hypothetical protein compare
Psest_3904 +1.2 1.5 hypothetical protein compare
Psest_1602 +1.1 1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0839 +1.1 5.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1016 +1.1 3.7 putative TIM-barrel protein, nifR3 family compare
Psest_0951 +1.1 6.2 FAD/FMN-containing dehydrogenases compare
Psest_0660 +1.1 2.4 Methyl-accepting chemotaxis protein compare
Psest_0538 +1.1 10.2 Signal transduction histidine kinase compare
Psest_0644 +1.1 2.4 siderophore ferric iron reductase, AHA_1954 family compare
Psest_1520 +1.0 1.9 hypothetical protein compare
Psest_2949 +1.0 3.5 Aspartyl aminopeptidase compare
Psest_1601 +1.0 2.0 Signal transduction histidine kinase compare
Psest_0999 +1.0 2.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3496 +1.0 1.4 Predicted metal-binding protein compare
Psest_0498 +1.0 1.3 ribosome small subunit-dependent GTPase A compare
Psest_4273 +1.0 5.1 Lysophospholipase compare
Psest_2591 +1.0 2.3 3-isopropylmalate dehydratase, large subunit compare
Psest_1360 +1.0 2.3 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_1725 +1.0 7.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2565 +1.0 1.2 Transcriptional regulator compare
Psest_0867 +1.0 1.6 hypothetical protein compare
Psest_0800 +1.0 4.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3185 +1.0 2.2 MoxR-like ATPases compare
Psest_1677 +1.0 2.1 Protein-tyrosine-phosphatase compare
Psest_0716 +1.0 1.7 Protein of unknown function (DUF3094). compare
Psest_0457 +0.9 2.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_4272 +0.9 2.9 hypothetical protein compare
Psest_0857 +0.9 1.6 Membrane transporters of cations and cationic drugs compare
Psest_3490 +0.9 2.3 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_3250 +0.9 1.7 Rho termination factor, N-terminal domain. compare
Psest_2983 +0.9 1.7 hypothetical protein compare
Psest_1994 +0.9 3.4 Amidases related to nicotinamidase compare
Psest_3995 +0.9 1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0309 +0.9 0.8 RND family efflux transporter, MFP subunit compare
Psest_1635 +0.9 8.1 Signal transduction histidine kinase compare
Psest_1475 +0.9 2.6 Uncharacterized protein conserved in bacteria compare
Psest_2703 +0.9 1.3 ATPases involved in chromosome partitioning compare
Psest_4108 +0.9 2.2 seryl-tRNA(sec) selenium transferase compare
Psest_3014 +0.9 1.3 cob(I)alamin adenosyltransferase compare
Psest_2847 +0.9 2.1 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_1877 +0.9 1.2 AraC-type DNA-binding domain-containing proteins compare
Psest_1118 +0.9 2.7 Predicted Fe-S-cluster oxidoreductase compare
Psest_0284 +0.9 6.3 pyridoxal phosphate enzyme, YggS family compare
Psest_0101 +0.9 3.4 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_3684 +0.8 4.2 Di- and tricarboxylate transporters compare
Psest_0087 +0.8 2.4 hypothetical protein compare
Psest_3351 +0.8 4.1 peptide chain release factor 3 compare
Psest_2850 +0.8 1.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0368 +0.8 1.9 Transcriptional regulator compare
Psest_2864 +0.8 1.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1097 +0.8 5.7 hypothetical protein compare
Psest_4405 +0.8 3.5 hypothetical protein compare
Psest_2229 +0.8 1.4 Uncharacterized protein conserved in bacteria compare
Psest_1056 +0.8 1.7 2-isopropylmalate synthase, bacterial type compare
Psest_0717 +0.8 6.3 Protein of unknown function (DUF1631). compare
Psest_2153 +0.8 2.5 formate dehydrogenase, gamma subunit compare
Psest_1704 +0.8 0.9 Dehydrogenases (flavoproteins) compare
Psest_4001 +0.8 2.3 acetylornithine deacetylase (ArgE) compare
Psest_0277 +0.8 1.1 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1595 +0.8 1.2 Copper chaperone compare
Psest_2525 +0.8 2.1 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_1540 +0.8 1.0 biotin-dependent carboxylase uncharacterized domain compare
Psest_3896 +0.7 1.5 arsenite-activated ATPase ArsA compare
Psest_3697 +0.7 1.9 Outer membrane lipoprotein carrier protein LolA. compare
Psest_1619 +0.7 2.3 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 compare
Psest_4287 +0.7 3.0 Predicted glutamine amidotransferases compare
Psest_1204 +0.7 1.8 Transcriptional regulators compare
Psest_0950 +0.7 1.7 hypothetical protein compare
Psest_2643 +0.7 1.7 Beta-glucosidase-related glycosidases compare
Psest_0673 +0.7 2.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_3045 +0.7 1.6 Cold shock proteins compare
Psest_2485 +0.7 2.9 hypothetical protein compare
Psest_3470 +0.7 2.0 Uncharacterized conserved protein compare
Psest_3832 +0.7 1.6 hypothetical protein compare
Psest_2621 +0.7 2.4 TadE-like protein. compare
Psest_0362 +0.7 2.5 TRAP-type C4-dicarboxylate transport system, small permease component compare
Psest_3356 +0.7 1.8 D-fructose-responsive transcription factor compare
Psest_3002 +0.7 1.2 Putative translation initiation inhibitor, yjgF family compare
Psest_1160 +0.7 1.6 Uncharacterized conserved protein compare
Psest_2901 +0.7 1.1 hypothetical protein compare
Psest_1881 +0.7 2.2 Nitroreductase compare
Psest_2846 +0.7 1.2 monovalent cation/proton antiporter, MnhG/PhaG subunit compare
Psest_3478 +0.7 1.3 Cytochrome B561 compare
Psest_1185 +0.7 1.4 heavy metal response regulator compare
Psest_0417 +0.7 1.6 Acyl-CoA dehydrogenases compare
Psest_2001 +0.7 0.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0846 +0.7 1.3 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_3314 +0.7 2.9 ribosomal subunit interface protein compare
Psest_3399 +0.7 0.9 Uncharacterized protein conserved in bacteria compare
Psest_2048 +0.7 1.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3206 +0.7 3.0 Uncharacterized protein conserved in bacteria compare
Psest_0190 +0.7 2.4 Uncharacterized conserved protein compare
Psest_2502 +0.7 1.9 Uncharacterized protein conserved in bacteria compare
Psest_0702 +0.7 2.7 Methyl-accepting chemotaxis protein compare
Psest_3216 +0.7 6.1 diguanylate cyclase (GGDEF) domain compare
Psest_2022 +0.6 1.5 ADP-ribose pyrophosphatase compare
Psest_0756 +0.6 2.9 alkylhydroperoxidase AhpD family core domain compare
Psest_3077 +0.6 1.4 Protein of unknown function (DUF3203). compare
Psest_2749 +0.6 1.8 Predicted transcriptional regulators compare
Psest_3756 +0.6 1.0 hypothetical protein compare
Psest_2527 +0.6 3.3 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4054 +0.6 2.3 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_4149 +0.6 1.7 fagellar hook-basal body proteins compare
Psest_3354 +0.6 1.8 1-phosphofructokinase (EC 2.7.1.56) (from data) compare
Psest_3048 +0.6 1.8 hypothetical protein compare
Psest_2543 +0.6 1.9 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_3902 +0.6 1.4 hypothetical protein compare
Psest_3217 +0.6 5.8 PAS domain S-box compare
Psest_3803 +0.6 0.9 DNA repair protein radc compare
Psest_2062 +0.6 2.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3521 +0.6 2.2 H+/gluconate symporter and related permeases compare
Psest_3196 +0.6 2.6 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes compare
Psest_3971 +0.6 3.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2359 +0.6 2.1 Predicted permeases compare
Psest_3456 +0.6 0.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_4088 +0.6 1.7 Transcriptional regulators compare
Psest_1215 +0.6 1.1 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_2937 +0.6 2.0 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_0497 +0.6 3.0 Flagellar motor protein compare
Psest_0987 +0.6 1.7 Predicted periplasmic or secreted lipoprotein compare
Psest_1543 +0.6 1.3 Predicted transcription regulator, contains HTH domain (MarR family) compare
Psest_1525 +0.6 2.6 Uncharacterized protein conserved in bacteria compare
Psest_1395 +0.6 2.0 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_2353 +0.6 2.6 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) compare
Psest_0849 +0.6 3.3 6-phosphogluconate dehydratase compare
Psest_2478 +0.6 1.9 Na+/serine symporter compare
Psest_1125 +0.6 2.7 Protein of unknown function (DUF3509). compare
Psest_4177 +0.6 1.1 flagellar biosynthetic protein FliP compare
Psest_3955 +0.6 2.1 Uncharacterized protein conserved in bacteria compare
Psest_1390 +0.6 1.4 Uncharacterized ABC-type transport system, permease component compare
Psest_1772 +0.6 1.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1100 +0.6 3.9 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases compare
Psest_1484 +0.6 3.4 Thiol-disulfide isomerase and thioredoxins compare
Psest_4286 +0.6 4.0 Glutamine synthetase compare
Psest_0697 +0.6 0.9 ribosomal protein L9 compare
Psest_2924 +0.6 1.9 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_1910 +0.6 1.0 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_1878 +0.6 1.8 Uncharacterized protein conserved in bacteria compare
Psest_1069 +0.6 2.1 Protease II compare
Psest_1637 +0.6 2.0 transcriptional regulator, ArgP family compare
Psest_0407 +0.6 1.9 Dioxygenases related to 2-nitropropane dioxygenase compare
Psest_1568 +0.6 3.0 hypothetical protein compare
Psest_2463 +0.6 1.5 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_1723 +0.6 3.1 flagellar export protein FliJ compare
Psest_2758 +0.5 1.3 Predicted transcriptional regulators compare
Psest_1719 +0.5 2.4 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_3021 +0.5 3.2 NAD-dependent protein deacetylases, SIR2 family compare
Psest_2663 +0.5 2.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2720 +0.5 1.3 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0264 +0.5 3.4 monofunctional biosynthetic peptidoglycan transglycosylase compare
Psest_1804 +0.5 0.5 Superfamily II DNA and RNA helicases compare
Psest_3564 +0.5 1.7 Uncharacterized protein conserved in bacteria compare
Psest_1731 +0.5 1.2 flagellar biosynthetic protein FliO compare
Psest_0726 +0.5 2.7 Membrane protein required for beta-lactamase induction compare
Psest_3693 +0.5 1.2 Glycosyltransferases involved in cell wall biogenesis compare
Psest_2321 +0.5 2.2 methylisocitrate lyase compare
Psest_0872 +0.5 0.8 Helix-turn-helix. compare
Psest_3934 +0.5 2.8 rRNA methylase, putative, group 2 compare
Psest_3447 +0.5 0.9 Uncharacterized MobA-related protein compare
Psest_1096 +0.5 2.7 hypothetical protein compare
Psest_2570 +0.5 1.3 Transcriptional regulator compare
Psest_3562 +0.5 0.9 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_0209 +0.5 0.9 membrane protein AbrB duplication compare
Psest_3078 +0.5 3.3 L-proline:Na+ symporter (from data) compare
Psest_4203 +0.5 2.0 NAD/NADP transhydrogenase alpha subunit compare
Psest_4302 +0.5 3.0 hypothetical protein compare
Psest_3518 +0.5 0.6 Transcriptional regulators compare
Psest_2630 +0.5 1.4 hypothetical protein compare
Psest_2540 +0.5 2.8 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2000 +0.5 2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0504 +0.5 1.6 Putative effector of murein hydrolase LrgA compare
Psest_2271 +0.5 1.0 coenzyme PQQ biosynthesis protein PqqD compare
Psest_3910 +0.5 0.6 Uncharacterized protein conserved in bacteria compare
Psest_1527 +0.5 3.4 Na+/proline symporter compare
Psest_0750 +0.5 2.0 hypothetical protein compare
Psest_3031 +0.5 0.4 hypothetical protein compare
Psest_3202 +0.5 0.9 Flavodoxins compare
Psest_0751 +0.5 1.7 Arabinose efflux permease compare
Psest_2866 +0.5 1.1 Uncharacterized conserved protein compare
Psest_1188 +0.5 2.3 FOG: EAL domain compare
Psest_1720 +0.5 2.6 flagellar motor switch protein FliG compare
Psest_1419 +0.5 1.9 Transcriptional regulator compare
Psest_3204 +0.5 2.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3895 +0.5 1.5 hypothetical protein compare
Psest_1736 +0.5 1.7 Cu/Zn superoxide dismutase compare
Psest_0148 +0.5 1.8 nitrate transport ATP-binding subunits C and D compare


Specific Phenotypes

For 12 genes in this experiment

For stress Potassium dichromate in Pseudomonas stutzeri RCH2

For stress Potassium dichromate across organisms