Experiment set16IT066 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrate; anaerobic; dichromate stress sample1

200 most important genes:

  gene name fitness t score description  
Psest_3301 -4.5 -4.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_4316 -3.8 -6.3 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_3479 -3.5 -6.6 molybdenum cofactor synthesis domain compare
Psest_1957 -3.3 -17.0 outer membrane porin, OprD family. compare
Psest_3648 -3.3 -8.0 anthranilate phosphoribosyltransferase compare
Psest_2088 -3.3 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_3650 -3.2 -13.0 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3485 -3.2 -16.5 nitrate reductase, beta subunit compare
Psest_3483 -3.2 -10.8 respiratory nitrate reductase, gamma subunit compare
Psest_2067 -3.1 -3.1 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0508 -3.1 -8.6 gamma-glutamyl phosphate reductase compare
Psest_2234 -3.1 -13.5 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1961 -3.0 -12.4 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3480 -3.0 -3.3 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_0828 -3.0 -8.8 Nitric oxide reductase activation protein compare
Psest_3168 -3.0 -3.3 Molybdopterin converting factor, large subunit compare
Psest_3998 -3.0 -7.0 glutamate--cysteine ligase compare
Psest_2988 -2.9 -10.6 aspartate kinase, monofunctional class compare
Psest_0826 -2.9 -10.7 Cytochrome c compare
Psest_3170 -2.8 -8.0 molybdenum cofactor biosynthesis protein MoaC compare
Psest_3486 -2.8 -18.7 respiratory nitrate reductase, alpha subunit compare
Psest_1473 -2.7 -6.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3647 -2.7 -1.9 Indole-3-glycerol phosphate synthase compare
Psest_3649 -2.7 -10.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0814 -2.7 -3.1 MoxR-like ATPases compare
Psest_2584 -2.7 -4.8 Phosphoribosylanthranilate isomerase compare
Psest_0296 -2.6 -11.2 glutathione synthetase, prokaryotic compare
Psest_0144 -2.6 -7.7 Fe-S cluster protector protein compare
Psest_0820 -2.5 -5.7 hypothetical protein compare
Psest_0494 -2.5 -8.8 Rhodanese-related sulfurtransferase compare
Psest_0827 -2.5 -13.9 Nitric oxide reductase large subunit compare
Psest_2545 -2.4 -4.0 recombination protein RecR compare
Psest_3484 -2.4 -7.4 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_2557 -2.4 -2.9 Protein of unknown function (DUF2474). compare
Psest_1814 -2.4 -14.3 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1115 -2.3 -2.9 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_4314 -2.3 -5.2 ABC-type metal ion transport system, ATPase component compare
Psest_3090 -2.3 -9.2 DNA repair protein RecO compare
Psest_3565 -2.2 -2.0 hypothetical protein compare
Psest_0811 -2.2 -11.3 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_0830 -2.2 -11.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1496 -2.2 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_3384 -2.2 -7.4 glutamate 5-kinase compare
Psest_3482 -2.2 -4.6 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2325 -2.2 -8.6 alpha-L-glutamate ligase-related protein compare
Psest_0855 -2.2 -5.4 NAD-dependent aldehyde dehydrogenases compare
Psest_3000 -2.2 -6.4 molybdate ABC transporter, permease protein compare
Psest_0815 -2.2 -13.3 Cytochrome c, mono- and diheme variants compare
Psest_1292 -2.1 -7.5 monothiol glutaredoxin, Grx4 family compare
Psest_0799 -2.1 -4.6 Uncharacterized protein involved in response to NO compare
Psest_1813 -2.1 -10.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2324 -2.1 -11.5 hypothetical protein compare
Psest_0004 -2.1 -10.9 recF protein compare
Psest_2561 -2.0 -1.3 hypothetical protein compare
Psest_0958 -2.0 -5.9 Oligoketide cyclase/lipid transport protein compare
Psest_1920 -2.0 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1231 -2.0 -7.5 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_2872 -1.9 -1.3 protein RecA compare
Psest_0821 -1.9 -11.4 Cytochrome D1 heme domain. compare
Psest_0823 -1.9 -4.5 Transcriptional regulators compare
Psest_3481 -1.9 -6.8 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_1663 -1.9 -4.4 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2999 -1.9 -4.9 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_3001 -1.8 -4.7 molybdenum ABC transporter, ATP-binding protein compare
Psest_0533 -1.8 -6.0 Sel1 repeat. compare
Psest_4315 -1.8 -2.9 ABC-type metal ion transport system, permease component compare
Psest_3721 -1.8 -7.6 Malic enzyme compare
Psest_2647 -1.7 -3.0 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_3731 -1.7 -9.5 exopolyphosphatase compare
Psest_0817 -1.7 -8.7 Ethylbenzene dehydrogenase. compare
Psest_0449 -1.6 -7.7 Glutamine synthetase adenylyltransferase compare
Psest_2304 -1.6 -1.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2090 -1.6 -2.4 Protein of unknown function (DUF2970). compare
Psest_0062 -1.5 -2.2 tryptophan synthase, alpha subunit compare
Psest_2026 -1.5 -7.9 Uncharacterized conserved protein compare
Psest_0393 -1.5 -5.8 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1417 -1.5 -2.0 hypothetical protein compare
Psest_2104 -1.5 -1.0 IscR-regulated protein YhgI compare
Psest_4298 -1.5 -1.0 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1656 -1.4 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2579 -1.4 -1.9 amidophosphoribosyltransferase compare
Psest_2333 -1.4 -1.0 Protein of unknown function (DUF3359). compare
Psest_1873 -1.4 -3.2 Predicted permease, DMT superfamily compare
Psest_1997 -1.4 -2.6 6-phosphogluconolactonase compare
Psest_2646 -1.4 -2.1 SOS regulatory protein LexA compare
Psest_0334 -1.4 -3.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3092 -1.4 -1.5 ribonuclease III, bacterial compare
Psest_1655 -1.4 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3843 -1.4 -6.2 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0193 -1.3 -1.8 conserved hypothetical protein compare
Psest_1819 -1.3 -9.2 Nucleoside-diphosphate-sugar epimerases compare
Psest_1640 -1.3 -5.5 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_1659 -1.3 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2329 -1.3 -6.9 Transcriptional regulator compare
Psest_0969 -1.3 -1.8 transcription elongation factor GreA compare
Psest_3766 -1.3 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_2027 -1.3 -7.8 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_3488 -1.3 -2.5 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0442 -1.3 -1.6 ATPases of the AAA+ class compare
Psest_3862 -1.2 -6.1 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0956 -1.2 -7.9 Transcriptional regulators compare
Psest_0297 -1.2 -3.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2975 -1.2 -1.8 tRNA_Arg_CCT compare
Psest_0537 -1.2 -2.2 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_2637 -1.2 -1.4 putative methyltransferase, YaeB/AF_0241 family compare
Psest_1354 -1.2 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_4061 -1.2 -4.2 sulfate ABC transporter, permease protein CysT compare
Psest_2764 -1.2 -1.1 hypothetical protein compare
Psest_3230 -1.2 -3.6 Uncharacterized conserved protein compare
Psest_2935 -1.2 -4.1 hypothetical protein compare
Psest_4345 -1.2 -5.2 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_0795 -1.2 -3.3 ABC-type multidrug transport system, ATPase component compare
Psest_2136 -1.2 -3.5 Predicted homoserine dehydrogenase compare
Psest_0822 -1.1 -2.4 Transcriptional regulators compare
Psest_0719 -1.1 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_2293 -1.1 -1.3 hypothetical protein compare
Psest_3173 -1.1 -4.3 Uncharacterized protein conserved in bacteria compare
Psest_0218 -1.1 -2.0 Acyl-CoA hydrolase compare
Psest_2757 -1.1 -1.0 hypothetical protein compare
Psest_2323 -1.1 -5.8 Uncharacterized protein conserved in archaea compare
Psest_0175 -1.1 -4.5 Xaa-Pro aminopeptidase compare
Psest_1986 -1.1 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_0514 -1.1 -4.8 lytic murein transglycosylase B compare
Psest_1167 -1.1 -0.9 hypothetical protein compare
Psest_3962 -1.1 -1.4 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_4063 -1.1 -3.3 sulfate ABC transporter, ATP-binding protein compare
Psest_0796 -1.1 -2.2 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_0959 -1.1 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_2259 -1.1 -6.7 excinuclease ABC, C subunit compare
Psest_3795 -1.0 -5.1 Glycine/D-amino acid oxidases (deaminating) compare
Psest_1944 -1.0 -7.4 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form (from data) compare
Psest_4049 -1.0 -1.2 hypothetical protein compare
Psest_1782 -1.0 -2.0 Predicted transcriptional regulators compare
Psest_2626 -1.0 -2.3 Flp pilus assembly protein CpaB compare
Psest_4221 -1.0 -1.9 homoserine kinase, Neisseria type compare
Psest_3576 -1.0 -7.9 excinuclease ABC, A subunit compare
Psest_3865 -1.0 -3.8 Predicted integral membrane protein (DUF2269). compare
Psest_1518 -1.0 -1.7 tRNA_Ser_CGA compare
Psest_4098 -1.0 -2.2 Superfamily I DNA and RNA helicases compare
Psest_1111 -1.0 -2.4 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_0558 -1.0 -0.8 urease, beta subunit compare
Psest_0152 -1.0 -4.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_4219 -1.0 -1.1 DNA polymerase I compare
Psest_2946 -1.0 -1.6 septum site-determining protein MinD compare
Psest_1056 -1.0 -1.4 2-isopropylmalate synthase, bacterial type compare
Psest_0155 -1.0 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3537 -1.0 -4.6 hypothetical protein compare
Psest_0708 -1.0 -1.1 outer membrane assembly lipoprotein YfiO compare
Psest_3215 -1.0 -2.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_2288 -1.0 -2.7 trigger factor compare
Psest_0809 -1.0 -5.3 Cytochrome c, mono- and diheme variants compare
Psest_3339 -1.0 -3.1 Signal transduction histidine kinase compare
Psest_0119 -0.9 -1.3 hypothetical protein compare
Psest_3645 -0.9 -5.9 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3921 -0.9 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_0316 -0.9 -1.8 Cytochrome c556 compare
Psest_0181 -0.9 -3.6 glycine cleavage system T protein compare
Psest_1657 -0.9 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_4396 -0.9 -4.4 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3413 -0.9 -1.8 hypothetical protein compare
Psest_1511 -0.9 -2.3 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0962 -0.9 -4.1 DNA repair protein RecN compare
Psest_2585 -0.9 -0.4 pseudouridylate synthase I compare
Psest_1295 -0.9 -3.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4060 -0.9 -5.0 sulfate/thiosulfate-binding protein compare
Psest_0835 -0.9 -6.1 Collagenase and related proteases compare
Psest_4088 -0.9 -2.7 Transcriptional regulators compare
Psest_0520 -0.9 -0.7 hypothetical protein compare
Psest_4085 -0.9 -5.6 Biotin carboxylase compare
Psest_2744 -0.9 -1.3 Uncharacterized conserved protein compare
Psest_1707 -0.9 -3.4 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_0516 -0.9 -4.4 D-alanyl-D-alanine carboxypeptidase compare
Psest_0697 -0.9 -1.7 ribosomal protein L9 compare
Psest_2308 -0.9 -0.6 Predicted Fe-S protein compare
Psest_3931 -0.9 -3.5 Signal transduction histidine kinase, nitrogen specific compare
Psest_2909 -0.9 -2.6 hypothetical protein compare
Psest_0622 -0.9 -2.7 Disulfide bond formation protein DsbB compare
Psest_0153 -0.8 -4.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_4084 -0.8 -5.9 oxaloacetate decarboxylase alpha subunit compare
Psest_0836 -0.8 -3.4 Collagenase and related proteases compare
Psest_0385 -0.8 -1.4 Conserved secreted protein compare
Psest_0257 -0.8 -2.0 Predicted Zn-dependent peptidases compare
Psest_1230 -0.8 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2343 -0.8 -2.4 Mg-dependent DNase compare
Psest_3174 -0.8 -5.7 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3401 -0.8 -3.5 DNA repair protein RadA compare
Psest_2645 -0.8 -2.8 Transcriptional regulator compare
Psest_3155 -0.8 -2.4 hypothetical protein compare
Psest_3527 -0.8 -2.8 Pseudouridylate synthases, 23S RNA-specific compare
Psest_4021 -0.8 -1.9 hypothetical protein compare
Psest_1852 -0.8 -2.5 Uncharacterized conserved protein compare
Psest_1762 -0.8 -1.5 cytochrome c-type biogenesis protein CcmI compare
Psest_0013 -0.8 -2.5 Lauroyl/myristoyl acyltransferase compare
Psest_2312 -0.8 -4.0 Small-conductance mechanosensitive channel compare
Psest_0015 -0.8 -1.1 Tetratricopeptide repeat. compare
Psest_3720 -0.8 -4.9 penicillin-binding protein, 1A family compare
Psest_2449 -0.8 -3.7 Predicted membrane protein compare
Psest_1812 -0.8 -3.4 pseudaminic acid CMP-transferase compare
Psest_2490 -0.8 -4.3 succinyl-CoA synthetase, alpha subunit compare
Psest_1227 -0.8 -1.6 Predicted SAM-dependent methyltransferase compare


Specific Phenotypes

For 10 genes in this experiment

For stress Potassium dichromate in Pseudomonas stutzeri RCH2

For stress Potassium dichromate across organisms