Experiment set16IT063 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrate; anaerobic; cadmium stress sample1

200 most important genes:

  gene name fitness t score description  
Psest_2988 -4.7 -9.0 aspartate kinase, monofunctional class compare
Psest_1115 -4.6 -3.0 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1473 -3.8 -6.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3490 -3.7 -5.4 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_3479 -3.6 -6.7 molybdenum cofactor synthesis domain compare
Psest_0393 -3.6 -14.0 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0296 -3.5 -13.5 glutathione synthetase, prokaryotic compare
Psest_3998 -3.3 -6.3 glutamate--cysteine ligase compare
Psest_3485 -3.2 -13.4 nitrate reductase, beta subunit compare
Psest_3650 -3.1 -13.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3168 -3.0 -3.6 Molybdopterin converting factor, large subunit compare
Psest_3170 -3.0 -8.0 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1292 -3.0 -9.4 monothiol glutaredoxin, Grx4 family compare
Psest_2584 -2.9 -6.7 Phosphoribosylanthranilate isomerase compare
Psest_3480 -2.9 -3.0 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3483 -2.9 -9.8 respiratory nitrate reductase, gamma subunit compare
Psest_3486 -2.9 -18.4 respiratory nitrate reductase, alpha subunit compare
Psest_3647 -2.9 -2.0 Indole-3-glycerol phosphate synthase compare
Psest_2234 -2.8 -14.2 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3649 -2.8 -10.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3648 -2.7 -7.0 anthranilate phosphoribosyltransferase compare
Psest_1961 -2.6 -7.8 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_0508 -2.5 -9.0 gamma-glutamyl phosphate reductase compare
Psest_3113 -2.4 -2.6 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3484 -2.3 -4.2 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_0799 -2.2 -5.3 Uncharacterized protein involved in response to NO compare
Psest_3092 -2.2 -2.0 ribonuclease III, bacterial compare
Psest_3000 -2.1 -8.8 molybdate ABC transporter, permease protein compare
Psest_3112 -2.1 -5.1 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1511 -2.1 -4.8 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3489 -2.0 -9.5 hypothetical protein compare
Psest_0144 -2.0 -8.1 Fe-S cluster protector protein compare
Psest_3384 -2.0 -7.6 glutamate 5-kinase compare
Psest_2999 -1.9 -5.4 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_1663 -1.9 -3.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0837 -1.8 -3.5 Putative lipid carrier protein compare
Psest_1656 -1.7 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0919 -1.7 -3.2 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_2579 -1.7 -2.3 amidophosphoribosyltransferase compare
Psest_0959 -1.7 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_3117 -1.7 -4.0 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0958 -1.7 -5.9 Oligoketide cyclase/lipid transport protein compare
Psest_2104 -1.6 -1.4 IscR-regulated protein YhgI compare
Psest_0953 -1.5 -7.7 iron-sulfur cluster-binding protein compare
Psest_0828 -1.5 -4.7 Nitric oxide reductase activation protein compare
Psest_0826 -1.5 -6.4 Cytochrome c compare
Psest_2329 -1.4 -8.5 Transcriptional regulator compare
Psest_4003 -1.4 -4.4 TIGR00153 family protein compare
Psest_3323 -1.4 -4.4 ribonuclease, Rne/Rng family compare
Psest_0827 -1.4 -10.2 Nitric oxide reductase large subunit compare
Psest_1974 -1.4 -3.0 integration host factor, alpha subunit compare
Psest_1012 -1.4 -3.0 Signal transduction histidine kinase compare
Psest_1249 -1.4 -4.8 serine O-acetyltransferase compare
Psest_2304 -1.3 -1.3 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0257 -1.3 -2.4 Predicted Zn-dependent peptidases compare
Psest_0334 -1.3 -2.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2744 -1.3 -1.2 Uncharacterized conserved protein compare
Psest_4134 -1.3 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1724 -1.3 -3.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0954 -1.2 -3.7 Fe-S oxidoreductase compare
Psest_1496 -1.2 -0.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_2911 -1.2 -1.2 Protein of unknown function (DUF2945). compare
Psest_3129 -1.2 -0.9 tyrosine recombinase XerD compare
Psest_1659 -1.2 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1813 -1.2 -6.0 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3413 -1.2 -2.4 hypothetical protein compare
Psest_4078 -1.2 -1.8 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1516 -1.2 -1.7 Uncharacterized lipoprotein compare
Psest_3921 -1.2 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_2324 -1.2 -7.0 hypothetical protein compare
Psest_3487 -1.2 -4.6 Nitrate/nitrite transporter compare
Psest_1814 -1.2 -7.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1326 -1.1 -2.5 Uncharacterized conserved protein compare
Psest_1655 -1.1 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3115 -1.1 -5.1 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0722 -1.1 -4.9 Predicted ATPase compare
Psest_1657 -1.1 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_4345 -1.1 -3.9 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3565 -1.1 -1.3 hypothetical protein compare
Psest_3936 -1.1 -3.8 ATP-dependent protease HslVU, peptidase subunit compare
Psest_1805 -1.1 -2.1 integration host factor, beta subunit compare
Psest_2945 -1.1 -1.0 septum site-determining protein MinC compare
Psest_0062 -1.1 -2.5 tryptophan synthase, alpha subunit compare
Psest_0346 -1.1 -2.4 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_2333 -1.1 -0.8 Protein of unknown function (DUF3359). compare
Psest_1082 -1.1 -2.1 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3001 -1.1 -2.2 molybdenum ABC transporter, ATP-binding protein compare
Psest_1306 -1.0 -1.5 hypothetical protein compare
Psest_2136 -1.0 -2.9 Predicted homoserine dehydrogenase compare
Psest_4343 -1.0 -1.4 Protein of unknown function (DUF3301). compare
Psest_2248 -1.0 -2.8 Predicted transcriptional regulators compare
Psest_0461 -1.0 -5.2 Glycosyltransferase involved in LPS biosynthesis compare
Psest_2083 -1.0 -4.1 Putative sterol carrier protein compare
Psest_0297 -1.0 -2.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3522 -1.0 -3.2 3-hydroxybutyrate dehydrogenase compare
Psest_0299 -1.0 -2.7 Chemotaxis signal transduction protein compare
Psest_0498 -1.0 -0.6 ribosome small subunit-dependent GTPase A compare
Psest_1295 -1.0 -3.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3174 -1.0 -6.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3496 -1.0 -1.3 Predicted metal-binding protein compare
Psest_3317 -1.0 -3.0 Phosphotransferase System HPr (HPr) Family compare
Psest_1505 -0.9 -1.5 Organic radical activating enzymes compare
Psest_0520 -0.9 -0.7 hypothetical protein compare
Psest_3762 -0.9 -2.0 iron donor protein CyaY compare
Psest_2285 -0.9 -2.0 ATP-dependent protease La compare
Psest_3488 -0.9 -1.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_4098 -0.9 -2.2 Superfamily I DNA and RNA helicases compare
Psest_4314 -0.9 -2.6 ABC-type metal ion transport system, ATPase component compare
Psest_3766 -0.9 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1940 -0.9 -3.6 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_3531 -0.9 -1.2 Peptidase propeptide and YPEB domain. compare
Psest_3843 -0.9 -4.2 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2001 -0.9 -0.6 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3399 -0.9 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_2613 -0.9 -1.1 hypothetical protein compare
Psest_0855 -0.9 -3.3 NAD-dependent aldehyde dehydrogenases compare
Psest_0170 -0.9 -3.6 5,10-methenyltetrahydrofolate synthetase compare
Psest_1772 -0.9 -2.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0300 -0.9 -4.1 Methyl-accepting chemotaxis protein compare
Psest_2023 -0.9 -1.6 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_1167 -0.8 -0.7 hypothetical protein compare
Psest_2771 -0.8 -1.3 Predicted membrane protein compare
Psest_2590 -0.8 -0.8 3-isopropylmalate dehydratase, small subunit compare
Psest_3720 -0.8 -5.1 penicillin-binding protein, 1A family compare
Psest_1819 -0.8 -6.4 Nucleoside-diphosphate-sugar epimerases compare
Psest_2809 -0.8 -1.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2798 -0.8 -2.6 Truncated hemoglobins compare
Psest_1260 -0.8 -3.4 type IV pilus biogenesis/stability protein PilW compare
Psest_0836 -0.8 -3.4 Collagenase and related proteases compare
Psest_4221 -0.8 -2.3 homoserine kinase, Neisseria type compare
Psest_2293 -0.8 -1.0 hypothetical protein compare
Psest_0737 -0.8 -0.7 Cu(I)-responsive transcriptional regulator compare
Psest_0684 -0.8 -3.7 GTP-binding protein HflX compare
Psest_0359 -0.8 -1.4 Transcriptional regulators compare
Psest_0902 -0.8 -2.2 Predicted transcriptional regulators compare
Psest_0835 -0.8 -5.8 Collagenase and related proteases compare
Psest_2976 -0.8 -1.1 hypothetical protein compare
Psest_0152 -0.8 -3.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_2730 -0.8 -2.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3761 -0.8 -1.5 Transcription elongation factor compare
Psest_1951 -0.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_2939 -0.8 -2.0 Predicted membrane protein compare
Psest_2232 -0.8 -5.4 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2935 -0.8 -1.6 hypothetical protein compare
Psest_0426 -0.8 -2.6 Transposase and inactivated derivatives compare
Psest_4219 -0.8 -1.1 DNA polymerase I compare
Psest_1293 -0.8 -1.0 VanZ like family. compare
Psest_3114 -0.8 -3.4 electron transport complex, RnfABCDGE type, C subunit compare
Psest_3231 -0.8 -1.3 hypothetical protein compare
Psest_3862 -0.8 -5.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0952 -0.8 -1.3 Uncharacterized conserved protein compare
Psest_3718 -0.8 -3.4 Tfp pilus assembly protein PilN compare
Psest_0999 -0.7 -1.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0294 -0.7 -2.3 Putative transcriptional regulator compare
Psest_2491 -0.7 -2.2 succinyl-CoA synthetase, beta subunit compare
Psest_1837 -0.7 -2.3 Endoglucanase compare
Psest_2718 -0.7 -0.9 hypothetical protein compare
Psest_0016 -0.7 -2.8 ectoine/hydroxyectoine ABC transporter, ATP-binding protein compare
Psest_0015 -0.7 -1.4 Tetratricopeptide repeat. compare
Psest_2872 -0.7 -0.9 protein RecA compare
Psest_3288 -0.7 -4.8 type IV-A pilus assembly ATPase PilB compare
Psest_1884 -0.7 -1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0852 -0.7 -2.0 glucose-6-phosphate 1-dehydrogenase compare
Psest_2866 -0.7 -1.6 Uncharacterized conserved protein compare
Psest_1161 -0.7 -1.8 E3 Ubiquitin ligase. compare
Psest_3721 -0.7 -3.1 Malic enzyme compare
Psest_3482 -0.7 -1.6 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1139 -0.7 -2.6 PAS domain S-box compare
Psest_4119 -0.7 -2.4 hypothetical protein compare
Psest_0086 -0.7 -1.1 hypothetical protein compare
Psest_2025 -0.7 -0.5 cold shock domain protein CspD compare
Psest_3146 -0.7 -1.2 hypothetical protein compare
Psest_0013 -0.7 -2.1 Lauroyl/myristoyl acyltransferase compare
Psest_1518 -0.7 -1.2 tRNA_Ser_CGA compare
Psest_2557 -0.7 -1.1 Protein of unknown function (DUF2474). compare
Psest_0313 -0.7 -2.2 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0955 -0.6 -2.8 D,L-lactate:H+ symporter (from data) compare
Psest_2460 -0.6 -0.7 hypothetical protein compare
Psest_3938 -0.6 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0609 -0.6 -1.0 hypothetical protein compare
Psest_2454 -0.6 -1.3 Rhodanese-related sulfurtransferase compare
Psest_1904 -0.6 -2.0 Arabinose efflux permease compare
Psest_1367 -0.6 -1.7 hypothetical protein compare
Psest_0218 -0.6 -1.8 Acyl-CoA hydrolase compare
Psest_2053 -0.6 -1.3 Uncharacterized low-complexity proteins compare
Psest_0843 -0.6 -3.2 hypothetical protein compare
Psest_1392 -0.6 -1.8 ABC-type uncharacterized transport systems, ATPase components compare
Psest_4371 -0.6 -1.5 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_4080 -0.6 -2.0 Carbonic anhydrase compare
Psest_2490 -0.6 -3.3 succinyl-CoA synthetase, alpha subunit compare
Psest_3481 -0.6 -3.1 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_1111 -0.6 -1.4 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3973 -0.6 -0.8 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_1999 -0.6 -0.5 pseudouridine synthase compare
Psest_1812 -0.6 -2.9 pseudaminic acid CMP-transferase compare
Psest_3143 -0.6 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_2268 -0.6 -1.9 Alcohol dehydrogenase, class IV compare
Psest_0633 -0.6 -3.1 Phage integrase family. compare
Psest_0389 -0.6 -1.9 hypothetical protein compare
Psest_2716 -0.6 -1.2 ABC-type multidrug transport system, ATPase component compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Cadmium chloride hemipentahydrate across organisms