Experiment set16IT062 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrate; anaerobic; copper stress sample3

200 most important genes:

  gene name fitness t score description  
Psest_3479 -5.5 -6.9 molybdenum cofactor synthesis domain compare
Psest_0393 -4.5 -11.9 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1115 -4.3 -2.8 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3650 -4.2 -12.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1974 -4.2 -3.8 integration host factor, alpha subunit compare
Psest_3489 -4.1 -15.5 hypothetical protein compare
Psest_3000 -4.1 -12.1 molybdate ABC transporter, permease protein compare
Psest_3485 -4.1 -16.7 nitrate reductase, beta subunit compare
Psest_3483 -4.0 -9.6 respiratory nitrate reductase, gamma subunit compare
Psest_3484 -4.0 -6.6 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3486 -4.0 -23.0 respiratory nitrate reductase, alpha subunit compare
Psest_2999 -4.0 -7.0 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_1473 -3.9 -7.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3168 -3.9 -3.3 Molybdopterin converting factor, large subunit compare
Psest_3490 -3.9 -4.3 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_1961 -3.8 -15.0 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_2988 -3.6 -10.9 aspartate kinase, monofunctional class compare
Psest_1805 -3.6 -3.1 integration host factor, beta subunit compare
Psest_3648 -3.6 -8.5 anthranilate phosphoribosyltransferase compare
Psest_2234 -3.4 -14.5 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3170 -3.4 -6.0 molybdenum cofactor biosynthesis protein MoaC compare
Psest_3480 -3.2 -2.8 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3998 -3.2 -6.4 glutamate--cysteine ligase compare
Psest_3301 -3.1 -4.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_2584 -3.0 -5.7 Phosphoribosylanthranilate isomerase compare
Psest_1657 -2.9 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3647 -2.9 -2.0 Indole-3-glycerol phosphate synthase compare
Psest_1724 -2.8 -4.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0952 -2.8 -3.2 Uncharacterized conserved protein compare
Psest_1292 -2.8 -8.7 monothiol glutaredoxin, Grx4 family compare
Psest_0296 -2.8 -7.6 glutathione synthetase, prokaryotic compare
Psest_2329 -2.8 -17.0 Transcriptional regulator compare
Psest_0193 -2.7 -2.0 conserved hypothetical protein compare
Psest_3649 -2.7 -8.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1511 -2.4 -3.5 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3487 -2.4 -8.9 Nitrate/nitrite transporter compare
Psest_3488 -2.4 -3.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3384 -2.3 -8.6 glutamate 5-kinase compare
Psest_0799 -2.2 -4.0 Uncharacterized protein involved in response to NO compare
Psest_0601 -2.2 -3.5 hypothetical protein compare
Psest_0520 -2.2 -1.0 hypothetical protein compare
Psest_0144 -2.2 -6.0 Fe-S cluster protector protein compare
Psest_0508 -2.2 -7.6 gamma-glutamyl phosphate reductase compare
Psest_0826 -2.0 -10.0 Cytochrome c compare
Psest_0844 -2.0 -3.1 High-affinity Fe2+/Pb2+ permease compare
Psest_3322 -2.0 -14.5 TIGR02099 family protein compare
Psest_0953 -2.0 -7.8 iron-sulfur cluster-binding protein compare
Psest_1986 -2.0 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_0954 -1.9 -8.0 Fe-S oxidoreductase compare
Psest_3323 -1.9 -6.0 ribonuclease, Rne/Rng family compare
Psest_2585 -1.8 -0.6 pseudouridylate synthase I compare
Psest_2579 -1.8 -1.7 amidophosphoribosyltransferase compare
Psest_0529 -1.8 -8.0 Putative Mg2+ and Co2+ transporter CorC compare
Psest_2293 -1.8 -1.6 hypothetical protein compare
Psest_0334 -1.8 -3.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1663 -1.8 -4.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0062 -1.7 -2.0 tryptophan synthase, alpha subunit compare
Psest_0958 -1.7 -6.3 Oligoketide cyclase/lipid transport protein compare
Psest_1819 -1.7 -11.6 Nucleoside-diphosphate-sugar epimerases compare
Psest_4316 -1.7 -3.2 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_2088 -1.7 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1656 -1.7 -1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1149 -1.7 -3.7 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_0828 -1.7 -5.1 Nitric oxide reductase activation protein compare
Psest_3113 -1.7 -1.9 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3862 -1.7 -9.8 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2324 -1.7 -5.9 hypothetical protein compare
Psest_2265 -1.6 -4.6 Outer membrane protein compare
Psest_2263 -1.6 -9.0 heavy metal efflux pump (cobalt-zinc-cadmium) conserved
Psest_2645 -1.6 -5.4 Transcriptional regulator compare
Psest_0988 -1.6 -2.5 Protein of unknown function (DUF2845). compare
Psest_2945 -1.6 -0.9 septum site-determining protein MinC compare
Psest_2323 -1.6 -7.6 Uncharacterized protein conserved in archaea compare
Psest_4345 -1.6 -5.3 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2786 -1.6 -1.3 Domain of unknown function (DUF3597). compare
Psest_4310 -1.6 -1.9 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2232 -1.6 -9.0 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1496 -1.6 -0.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_0609 -1.6 -1.9 hypothetical protein compare
Psest_0581 -1.6 -8.2 heavy metal response regulator compare
Psest_2266 -1.6 -2.6 hypothetical protein compare
Psest_2308 -1.6 -1.0 Predicted Fe-S protein compare
Psest_0827 -1.6 -10.5 Nitric oxide reductase large subunit compare
Psest_0584 -1.6 -3.8 hypothetical protein compare
Psest_1012 -1.5 -3.0 Signal transduction histidine kinase compare
Psest_0846 -1.5 -2.3 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2104 -1.5 -1.4 IscR-regulated protein YhgI compare
Psest_2325 -1.5 -5.3 alpha-L-glutamate ligase-related protein compare
Psest_1295 -1.5 -4.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2975 -1.5 -2.3 tRNA_Arg_CCT compare
Psest_3762 -1.4 -3.3 iron donor protein CyaY compare
Psest_3921 -1.4 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_0300 -1.4 -7.6 Methyl-accepting chemotaxis protein compare
Psest_2933 -1.4 -7.8 Signal transduction histidine kinase compare
Psest_4128 -1.4 -1.6 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1655 -1.4 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2067 -1.4 -1.5 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1417 -1.4 -1.7 hypothetical protein compare
Psest_1659 -1.4 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1814 -1.4 -8.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0737 -1.3 -0.9 Cu(I)-responsive transcriptional regulator compare
Psest_0837 -1.3 -2.5 Putative lipid carrier protein compare
Psest_2714 -1.3 -1.3 7-cyano-7-deazaguanine reductase compare
Psest_2264 -1.3 -5.3 RND family efflux transporter, MFP subunit compare
Psest_1695 -1.3 -1.9 Tfp pilus assembly protein PilZ compare
Psest_3001 -1.3 -2.9 molybdenum ABC transporter, ATP-binding protein compare
Psest_3960 -1.3 -1.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3112 -1.3 -3.2 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0013 -1.3 -4.3 Lauroyl/myristoyl acyltransferase compare
Psest_4239 -1.2 -6.6 Cytochrome b compare
Psest_0842 -1.2 -1.4 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_1532 -1.2 -3.0 DNA recombination-dependent growth factor C compare
Psest_0575 -1.2 -0.7 HrpA-like helicases compare
Psest_0836 -1.2 -5.2 Collagenase and related proteases compare
Psest_3129 -1.2 -0.8 tyrosine recombinase XerD compare
Psest_0466 -1.2 -3.2 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0835 -1.2 -8.2 Collagenase and related proteases compare
Psest_0959 -1.2 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3092 -1.2 -1.3 ribonuclease III, bacterial compare
Psest_2646 -1.2 -1.6 SOS regulatory protein LexA compare
Psest_2757 -1.2 -1.0 hypothetical protein compare
Psest_2764 -1.2 -0.8 hypothetical protein compare
Psest_1505 -1.2 -1.6 Organic radical activating enzymes compare
Psest_3481 -1.1 -4.3 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_1813 -1.1 -5.2 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3532 -1.1 -5.5 Peptidase propeptide and YPEB domain. compare
Psest_0993 -1.1 -5.3 Glucose-6-phosphate isomerase compare
Psest_0596 -1.1 -9.2 heavy metal efflux pump (cobalt-zinc-cadmium) compare
Psest_3115 -1.1 -5.0 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1518 -1.1 -2.3 tRNA_Ser_CGA compare
Psest_2744 -1.1 -1.1 Uncharacterized conserved protein compare
Psest_3288 -1.1 -7.1 type IV-A pilus assembly ATPase PilB compare
Psest_1293 -1.1 -1.4 VanZ like family. compare
Psest_1082 -1.1 -1.3 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0461 -1.1 -4.0 Glycosyltransferase involved in LPS biosynthesis compare
Psest_0161 -1.1 -1.6 Membrane-bound metallopeptidase compare
Psest_1843 -1.1 -1.7 Uncharacterized Fe-S protein compare
Psest_1306 -1.1 -1.3 hypothetical protein compare
Psest_3482 -1.1 -2.7 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3881 -1.1 -1.1 hypothetical protein compare
Psest_3317 -1.1 -2.3 Phosphotransferase System HPr (HPr) Family compare
Psest_0796 -1.1 -2.2 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_0086 -1.1 -2.8 hypothetical protein compare
Psest_3084 -1.0 -1.5 methyltransferase, putative compare
Psest_0845 -1.0 -0.5 hypothetical protein compare
Psest_3136 -1.0 -3.9 Putative Mg2+ and Co2+ transporter CorB compare
Psest_0218 -1.0 -2.6 Acyl-CoA hydrolase compare
Psest_1631 -1.0 -1.4 Uncharacterized conserved small protein compare
Psest_1870 -1.0 -1.0 Transcriptional regulators compare
Psest_2020 -1.0 -2.0 Uncharacterized protein involved in purine metabolism compare
Psest_0869 -1.0 -1.6 Acetyltransferase (isoleucine patch superfamily) compare
Psest_0297 -1.0 -3.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4346 -1.0 -4.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3114 -1.0 -4.6 electron transport complex, RnfABCDGE type, C subunit compare
Psest_0152 -1.0 -3.0 Imidazoleglycerol-phosphate dehydratase compare
Psest_4315 -1.0 -1.6 ABC-type metal ion transport system, permease component compare
Psest_0814 -1.0 -1.3 MoxR-like ATPases compare
Psest_3718 -1.0 -3.0 Tfp pilus assembly protein PilN compare
Psest_0484 -1.0 -2.9 hypothetical protein compare
Psest_3721 -1.0 -3.4 Malic enzyme compare
Psest_0299 -1.0 -2.4 Chemotaxis signal transduction protein compare
Psest_3720 -1.0 -5.0 penicillin-binding protein, 1A family compare
Psest_1139 -1.0 -3.1 PAS domain S-box compare
Psest_0843 -1.0 -4.5 hypothetical protein compare
Psest_3174 -1.0 -5.7 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_1660 -0.9 -1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_4124 -0.9 -2.7 hypothetical protein compare
Psest_3988 -0.9 -4.2 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_3843 -0.9 -3.7 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2667 -0.9 -2.9 Uncharacterized protein involved in propionate catabolism compare
Psest_2946 -0.9 -1.8 septum site-determining protein MinD compare
Psest_1612 -0.9 -3.2 ABC-type multidrug transport system, ATPase component compare
Psest_1506 -0.9 -3.1 queuosine biosynthesis protein QueC compare
Psest_0687 -0.9 -3.8 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3150 -0.9 -4.0 hypothetical protein compare
Psest_0133 -0.9 -0.8 type VI secretion protein, VC_A0107 family compare
Psest_2911 -0.9 -1.2 Protein of unknown function (DUF2945). compare
Psest_0462 -0.9 -6.7 Lipid A core - O-antigen ligase and related enzymes compare
Psest_2070 -0.9 -4.3 FOG: LysM repeat compare
Psest_4134 -0.9 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0281 -0.9 -4.0 Dynamin family. compare
Psest_3173 -0.9 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_1884 -0.9 -1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1691 -0.9 -2.2 aminodeoxychorismate lyase compare
Psest_2580 -0.9 -3.2 Uncharacterized membrane protein, required for colicin V production compare
Psest_3766 -0.9 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0790 -0.9 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3519 -0.9 -1.3 Uncharacterized conserved protein compare
Psest_0237 -0.9 -2.8 intracellular protease, PfpI family compare
Psest_0872 -0.9 -0.8 Helix-turn-helix. compare
Psest_0181 -0.8 -3.5 glycine cleavage system T protein compare
Psest_1242 -0.8 -1.3 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1985 -0.8 -2.3 histidinol-phosphate aminotransferase compare
Psest_1975 -0.8 -3.7 Predicted transcriptional regulators compare
Psest_0170 -0.8 -3.1 5,10-methenyltetrahydrofolate synthetase compare
Psest_3063 -0.8 -3.1 hypothetical protein compare
Psest_3865 -0.8 -2.6 Predicted integral membrane protein (DUF2269). compare
Psest_1241 -0.8 -3.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3047 -0.8 -0.7 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3070 -0.8 -1.5 3-oxoadipyl-CoA thiolase compare


Specific Phenotypes

For 6 genes in this experiment

For stress copper (II) chloride dihydrate in Pseudomonas stutzeri RCH2

For stress copper (II) chloride dihydrate across organisms