Experiment set16IT059 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrate; anaerobic; nickel stress sample3

200 most important genes:

  gene name fitness t score description  
Psest_3168 -3.6 -3.7 Molybdopterin converting factor, large subunit compare
Psest_2988 -3.4 -7.8 aspartate kinase, monofunctional class compare
Psest_3650 -3.2 -13.1 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1473 -3.2 -7.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2584 -3.0 -6.5 Phosphoribosylanthranilate isomerase compare
Psest_3648 -2.9 -8.0 anthranilate phosphoribosyltransferase compare
Psest_3479 -2.8 -7.9 molybdenum cofactor synthesis domain compare
Psest_0508 -2.7 -8.4 gamma-glutamyl phosphate reductase compare
Psest_3483 -2.6 -6.4 respiratory nitrate reductase, gamma subunit compare
Psest_3647 -2.6 -3.0 Indole-3-glycerol phosphate synthase compare
Psest_3998 -2.5 -9.0 glutamate--cysteine ligase compare
Psest_0952 -2.5 -2.9 Uncharacterized conserved protein compare
Psest_3485 -2.5 -14.5 nitrate reductase, beta subunit compare
Psest_1961 -2.4 -10.6 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_0297 -2.4 -7.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0393 -2.4 -10.3 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3486 -2.4 -17.0 respiratory nitrate reductase, alpha subunit compare
Psest_0153 -2.2 -11.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2234 -2.2 -12.0 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3489 -2.1 -10.4 hypothetical protein compare
Psest_0193 -2.1 -1.5 conserved hypothetical protein compare
Psest_0466 -2.1 -3.6 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3490 -2.0 -3.6 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_0155 -2.0 -7.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1814 -2.0 -13.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3170 -1.9 -6.8 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0152 -1.9 -3.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_3649 -1.9 -6.9 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3488 -1.9 -2.9 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3384 -1.9 -7.1 glutamate 5-kinase compare
Psest_1724 -1.9 -3.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3484 -1.9 -3.7 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_2329 -1.9 -11.5 Transcriptional regulator compare
Psest_0800 -1.9 -6.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0844 -1.9 -4.2 High-affinity Fe2+/Pb2+ permease compare
Psest_1115 -1.8 -2.9 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1292 -1.8 -7.4 monothiol glutaredoxin, Grx4 family compare
Psest_3323 -1.8 -4.4 ribonuclease, Rne/Rng family compare
Psest_1511 -1.8 -4.8 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1986 -1.7 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_2333 -1.7 -1.1 Protein of unknown function (DUF3359). compare
Psest_2579 -1.7 -2.0 amidophosphoribosyltransferase compare
Psest_1695 -1.7 -2.7 Tfp pilus assembly protein PilZ compare
Psest_2104 -1.7 -1.1 IscR-regulated protein YhgI compare
Psest_1012 -1.6 -2.4 Signal transduction histidine kinase compare
Psest_3480 -1.6 -2.8 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_0062 -1.6 -2.3 tryptophan synthase, alpha subunit compare
Psest_4345 -1.6 -7.9 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1809 -1.5 -8.5 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_2067 -1.5 -1.8 ABC-type oligopeptide transport system, periplasmic component compare
Psest_4049 -1.5 -1.9 hypothetical protein compare
Psest_4134 -1.5 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_0013 -1.4 -4.9 Lauroyl/myristoyl acyltransferase compare
Psest_1879 -1.4 -2.2 Trk-type K+ transport systems, membrane components compare
Psest_2325 -1.4 -5.5 alpha-L-glutamate ligase-related protein compare
Psest_3806 -1.4 -7.3 Phosphomannomutase compare
Psest_3718 -1.4 -6.5 Tfp pilus assembly protein PilN compare
Psest_3809 -1.4 -4.1 hypothetical protein compare
Psest_3000 -1.4 -4.6 molybdate ABC transporter, permease protein compare
Psest_2911 -1.4 -1.9 Protein of unknown function (DUF2945). compare
Psest_3092 -1.3 -1.5 ribonuclease III, bacterial compare
Psest_1249 -1.3 -4.1 serine O-acetyltransferase compare
Psest_3921 -1.3 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_1282 -1.3 -1.9 Amidases related to nicotinamidase compare
Psest_3288 -1.3 -8.1 type IV-A pilus assembly ATPase PilB compare
Psest_3720 -1.3 -8.7 penicillin-binding protein, 1A family compare
Psest_0855 -1.3 -3.7 NAD-dependent aldehyde dehydrogenases compare
Psest_1974 -1.3 -2.9 integration host factor, alpha subunit compare
Psest_0998 -1.3 -1.4 poly(A) polymerase compare
Psest_1813 -1.3 -6.8 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2967 -1.3 -2.6 flagellar basal-body rod protein FlgC compare
Psest_1660 -1.2 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0257 -1.2 -2.4 Predicted Zn-dependent peptidases compare
Psest_0296 -1.2 -4.4 glutathione synthetase, prokaryotic compare
Psest_0520 -1.2 -0.8 hypothetical protein compare
Psest_2786 -1.2 -1.2 Domain of unknown function (DUF3597). compare
Psest_4314 -1.2 -3.2 ABC-type metal ion transport system, ATPase component compare
Psest_0609 -1.2 -1.5 hypothetical protein compare
Psest_1082 -1.2 -1.7 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0462 -1.2 -10.1 Lipid A core - O-antigen ligase and related enzymes compare
Psest_1655 -1.2 -2.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0285 -1.2 -6.3 pilus retraction protein PilT compare
Psest_1691 -1.2 -2.0 aminodeoxychorismate lyase compare
Psest_0334 -1.2 -2.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2136 -1.2 -4.2 Predicted homoserine dehydrogenase compare
Psest_0740 -1.1 -1.9 Transcriptional regulator compare
Psest_0461 -1.1 -3.9 Glycosyltransferase involved in LPS biosynthesis compare
Psest_1663 -1.1 -2.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_4396 -1.1 -6.1 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_1643 -1.1 -0.7 hypothetical protein compare
Psest_0687 -1.1 -5.3 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2945 -1.1 -0.9 septum site-determining protein MinC compare
Psest_2968 -1.1 -6.9 flagellar basal-body rod protein FlgB compare
Psest_0097 -1.1 -2.0 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3322 -1.1 -7.7 TIGR02099 family protein compare
Psest_0697 -1.1 -2.0 ribosomal protein L9 compare
Psest_3374 -1.1 -6.4 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_3045 -1.0 -1.1 Cold shock proteins compare
Psest_0573 -1.0 -4.1 cation diffusion facilitator family transporter conserved
Psest_0299 -1.0 -2.2 Chemotaxis signal transduction protein compare
Psest_0799 -1.0 -1.7 Uncharacterized protein involved in response to NO compare
Psest_1456 -1.0 -2.9 Protein of unknown function (DUF2892). compare
Psest_3298 -1.0 -5.5 histidinol dehydrogenase compare
Psest_0491 -1.0 -6.0 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1008 -1.0 -0.7 hypothetical protein compare
Psest_4119 -1.0 -3.4 hypothetical protein compare
Psest_0953 -1.0 -5.1 iron-sulfur cluster-binding protein compare
Psest_3174 -1.0 -6.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_1817 -1.0 -3.6 hypothetical protein compare
Psest_4315 -1.0 -2.3 ABC-type metal ion transport system, permease component compare
Psest_3828 -1.0 -1.1 zinc-binding alcohol dehydrogenase family protein compare
Psest_3373 -1.0 -4.0 Tfp pilus assembly protein PilX compare
Psest_1315 -1.0 -1.5 hypothetical protein compare
Psest_0263 -1.0 -5.1 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3645 -1.0 -5.0 Predicted redox protein, regulator of disulfide bond formation compare
Psest_2946 -1.0 -1.7 septum site-determining protein MinD compare
Psest_1139 -1.0 -2.7 PAS domain S-box compare
Psest_4078 -1.0 -1.4 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1812 -1.0 -5.0 pseudaminic acid CMP-transferase compare
Psest_3860 -1.0 -2.4 Predicted permeases compare
Psest_2999 -1.0 -2.8 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_0300 -1.0 -5.3 Methyl-accepting chemotaxis protein compare
Psest_1818 -1.0 -5.3 GDP-mannose 4,6-dehydratase compare
Psest_2756 -1.0 -0.7 hypothetical protein compare
Psest_1167 -1.0 -0.8 hypothetical protein compare
Psest_1163 -1.0 -3.0 diguanylate cyclase (GGDEF) domain compare
Psest_0843 -1.0 -4.1 hypothetical protein compare
Psest_3487 -0.9 -3.8 Nitrate/nitrite transporter compare
Psest_3684 -0.9 -5.8 Di- and tricarboxylate transporters compare
Psest_1293 -0.9 -1.2 VanZ like family. compare
Psest_1485 -0.9 -3.2 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_2323 -0.9 -4.9 Uncharacterized protein conserved in archaea compare
Psest_0708 -0.9 -1.4 outer membrane assembly lipoprotein YfiO compare
Psest_0958 -0.9 -3.8 Oligoketide cyclase/lipid transport protein compare
Psest_1417 -0.9 -1.5 hypothetical protein compare
Psest_2020 -0.9 -2.1 Uncharacterized protein involved in purine metabolism compare
Psest_2716 -0.9 -2.2 ABC-type multidrug transport system, ATPase component compare
Psest_1876 -0.9 -2.9 Predicted membrane protein compare
Psest_2293 -0.9 -1.1 hypothetical protein compare
Psest_2539 -0.9 -1.7 adenine phosphoribosyltransferase compare
Psest_0796 -0.9 -2.5 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_3575 -0.9 -4.5 Arabinose efflux permease compare
Psest_0846 -0.9 -1.7 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_3943 -0.9 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0416 -0.9 -2.9 hypothetical protein compare
Psest_0707 -0.9 -4.7 MYND finger. compare
Psest_1837 -0.9 -2.6 Endoglucanase compare
Psest_3743 -0.9 -2.5 Regulator of sigma D compare
Psest_1510 -0.9 -2.2 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1810 -0.9 -5.6 UDP-N-acetylglucosamine 4,6-dehydratase compare
Psest_0790 -0.9 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3719 -0.9 -5.3 type IV pilus assembly protein PilM compare
Psest_3531 -0.9 -0.9 Peptidase propeptide and YPEB domain. compare
Psest_0161 -0.9 -1.4 Membrane-bound metallopeptidase compare
Psest_0608 -0.9 -4.2 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Psest_4371 -0.9 -1.9 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3958 -0.9 -2.7 Predicted Fe-S-cluster oxidoreductase compare
Psest_0498 -0.9 -0.6 ribosome small subunit-dependent GTPase A compare
Psest_0182 -0.9 -3.4 glycine cleavage system H protein compare
Psest_0706 -0.8 -4.8 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_2736 -0.8 -1.7 Transposase and inactivated derivatives compare
Psest_0537 -0.8 -1.6 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_1679 -0.8 -1.1 ribonuclease, Rne/Rng family compare
Psest_1819 -0.8 -6.3 Nucleoside-diphosphate-sugar epimerases compare
Psest_3573 -0.8 -2.1 dTDP-4-dehydrorhamnose reductase compare
Psest_1295 -0.8 -3.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0959 -0.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3112 -0.8 -2.7 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1260 -0.8 -3.3 type IV pilus biogenesis/stability protein PilW compare
Psest_1765 -0.8 -2.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2023 -0.8 -2.2 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3936 -0.8 -2.9 ATP-dependent protease HslVU, peptidase subunit compare
Psest_4346 -0.8 -2.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4316 -0.8 -2.8 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_3853 -0.8 -1.9 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_3717 -0.8 -3.8 Tfp pilus assembly protein PilO compare
Psest_4252 -0.8 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_1496 -0.8 -0.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_4247 -0.8 -2.5 Serine/threonine protein phosphatase compare
Psest_3287 -0.8 -3.0 Type II secretory pathway, component PulF compare
Psest_4064 -0.8 -2.7 Lactate dehydrogenase and related dehydrogenases compare
Psest_2586 -0.8 -6.6 FimV N-terminal domain compare
Psest_2517 -0.8 -2.5 hypothetical protein compare
Psest_0584 -0.8 -3.4 hypothetical protein compare
Psest_3299 -0.8 -4.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0186 -0.8 -2.4 Protein-disulfide isomerase compare
Psest_1805 -0.8 -1.5 integration host factor, beta subunit compare
Psest_4363 -0.8 -3.9 ATPases involved in chromosome partitioning compare
Psest_0678 -0.8 -2.0 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_3226 -0.8 -0.7 Predicted membrane protein compare
Psest_3231 -0.8 -1.3 hypothetical protein compare
Psest_1472 -0.8 -3.9 Protein of unknown function (DUF3108). compare
Psest_1955 -0.8 -2.8 Predicted membrane protein compare
Psest_0902 -0.8 -2.2 Predicted transcriptional regulators compare
Psest_1161 -0.8 -1.9 E3 Ubiquitin ligase. compare
Psest_1919 -0.8 -1.4 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_2730 -0.8 -2.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4100 -0.8 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1242 -0.8 -1.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2110 -0.8 -1.9 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas stutzeri RCH2

For stress Nickel (II) chloride hexahydrate across organisms