Experiment set16IT057 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrate; anaerobic; nickel stress sample1

200 most important genes:

  gene name fitness t score description  
Psest_1115 -4.4 -3.8 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_2988 -3.9 -9.7 aspartate kinase, monofunctional class compare
Psest_3480 -3.5 -3.1 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3650 -3.4 -11.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1473 -3.2 -6.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0845 -3.1 -1.0 hypothetical protein compare
Psest_2584 -3.1 -5.5 Phosphoribosylanthranilate isomerase compare
Psest_2067 -2.9 -2.5 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3649 -2.8 -9.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3483 -2.7 -9.3 respiratory nitrate reductase, gamma subunit compare
Psest_0152 -2.7 -8.2 Imidazoleglycerol-phosphate dehydratase compare
Psest_0193 -2.6 -2.3 conserved hypothetical protein compare
Psest_3648 -2.6 -5.3 anthranilate phosphoribosyltransferase compare
Psest_0155 -2.6 -6.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3479 -2.6 -8.4 molybdenum cofactor synthesis domain compare
Psest_1961 -2.5 -13.1 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3486 -2.5 -18.0 respiratory nitrate reductase, alpha subunit compare
Psest_3488 -2.4 -4.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0537 -2.4 -3.0 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_2967 -2.3 -5.5 flagellar basal-body rod protein FlgC compare
Psest_4310 -2.3 -2.4 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_0393 -2.3 -5.7 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2234 -2.2 -11.7 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3484 -2.2 -6.1 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3647 -2.2 -3.2 Indole-3-glycerol phosphate synthase compare
Psest_3489 -2.2 -11.9 hypothetical protein compare
Psest_3485 -2.2 -11.6 nitrate reductase, beta subunit compare
Psest_0153 -2.1 -10.8 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3170 -2.1 -5.6 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0508 -2.1 -7.0 gamma-glutamyl phosphate reductase compare
Psest_3998 -2.0 -6.4 glutamate--cysteine ligase compare
Psest_0297 -1.9 -4.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3936 -1.9 -5.8 ATP-dependent protease HslVU, peptidase subunit compare
Psest_4345 -1.9 -9.0 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3384 -1.9 -6.6 glutamate 5-kinase compare
Psest_0296 -1.9 -8.1 glutathione synthetase, prokaryotic compare
Psest_3168 -1.9 -3.0 Molybdopterin converting factor, large subunit compare
Psest_1724 -1.8 -4.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3490 -1.8 -2.8 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_4316 -1.8 -4.1 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_1814 -1.7 -11.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1657 -1.7 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2329 -1.7 -10.0 Transcriptional regulator compare
Psest_3809 -1.7 -5.2 hypothetical protein compare
Psest_1103 -1.7 -3.1 GTP-binding protein YchF compare
Psest_0062 -1.7 -1.6 tryptophan synthase, alpha subunit compare
Psest_2579 -1.7 -1.9 amidophosphoribosyltransferase compare
Psest_0708 -1.7 -2.0 outer membrane assembly lipoprotein YfiO compare
Psest_2104 -1.6 -1.1 IscR-regulated protein YhgI compare
Psest_1809 -1.6 -8.6 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1813 -1.6 -7.5 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2999 -1.6 -5.1 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_1663 -1.6 -4.1 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3000 -1.6 -6.6 molybdate ABC transporter, permease protein compare
Psest_0013 -1.5 -4.9 Lauroyl/myristoyl acyltransferase compare
Psest_1870 -1.5 -1.5 Transcriptional regulators compare
Psest_3298 -1.5 -7.9 histidinol dehydrogenase compare
Psest_2088 -1.5 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_1292 -1.5 -6.1 monothiol glutaredoxin, Grx4 family compare
Psest_0800 -1.4 -4.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1496 -1.4 -1.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_3288 -1.4 -9.5 type IV-A pilus assembly ATPase PilB compare
Psest_2946 -1.4 -1.6 septum site-determining protein MinD compare
Psest_3995 -1.4 -2.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4128 -1.4 -1.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0300 -1.4 -6.8 Methyl-accepting chemotaxis protein compare
Psest_2293 -1.3 -1.4 hypothetical protein compare
Psest_3487 -1.3 -6.1 Nitrate/nitrite transporter compare
Psest_0119 -1.3 -1.6 hypothetical protein compare
Psest_1765 -1.3 -4.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1695 -1.3 -3.3 Tfp pilus assembly protein PilZ compare
Psest_1012 -1.3 -2.5 Signal transduction histidine kinase compare
Psest_2538 -1.3 -1.8 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3720 -1.3 -8.0 penicillin-binding protein, 1A family compare
Psest_1472 -1.3 -5.7 Protein of unknown function (DUF3108). compare
Psest_1295 -1.3 -3.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3449 -1.3 -2.1 DJ-1 family protein compare
Psest_0334 -1.3 -2.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3231 -1.3 -2.5 hypothetical protein compare
Psest_1511 -1.3 -3.0 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0573 -1.2 -4.3 cation diffusion facilitator family transporter conserved
Psest_0837 -1.2 -3.1 Putative lipid carrier protein compare
Psest_2646 -1.2 -2.0 SOS regulatory protein LexA compare
Psest_0466 -1.2 -2.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0790 -1.2 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_2744 -1.2 -1.4 Uncharacterized conserved protein compare
Psest_2716 -1.2 -2.3 ABC-type multidrug transport system, ATPase component compare
Psest_0170 -1.2 -3.8 5,10-methenyltetrahydrofolate synthetase compare
Psest_4134 -1.2 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_0462 -1.2 -9.9 Lipid A core - O-antigen ligase and related enzymes compare
Psest_1818 -1.2 -7.1 GDP-mannose 4,6-dehydratase compare
Psest_3766 -1.2 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3399 -1.2 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_1204 -1.2 -1.8 Transcriptional regulators compare
Psest_0697 -1.2 -1.9 ribosomal protein L9 compare
Psest_1656 -1.2 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2968 -1.2 -5.2 flagellar basal-body rod protein FlgB compare
Psest_1920 -1.2 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_2764 -1.2 -0.9 hypothetical protein compare
Psest_3146 -1.2 -1.6 hypothetical protein compare
Psest_0953 -1.1 -4.6 iron-sulfur cluster-binding protein compare
Psest_3322 -1.1 -8.9 TIGR02099 family protein compare
Psest_0461 -1.1 -3.7 Glycosyltransferase involved in LPS biosynthesis compare
Psest_1659 -1.1 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1810 -1.1 -7.6 UDP-N-acetylglucosamine 4,6-dehydratase compare
Psest_2278 -1.1 -2.2 coenzyme PQQ biosynthesis protein PqqD compare
Psest_2872 -1.1 -1.3 protein RecA compare
Psest_3860 -1.1 -1.4 Predicted permeases compare
Psest_0491 -1.1 -6.9 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0740 -1.1 -1.8 Transcriptional regulator compare
Psest_4252 -1.1 -4.0 Uncharacterized protein conserved in bacteria compare
Psest_3806 -1.1 -5.3 Phosphomannomutase compare
Psest_3921 -1.1 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_0687 -1.1 -4.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2333 -1.1 -0.8 Protein of unknown function (DUF3359). compare
Psest_3717 -1.1 -4.6 Tfp pilus assembly protein PilO compare
Psest_3301 -1.1 -1.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_2976 -1.0 -1.3 hypothetical protein compare
Psest_1540 -1.0 -1.0 biotin-dependent carboxylase uncharacterized domain compare
Psest_0799 -1.0 -1.7 Uncharacterized protein involved in response to NO compare
Psest_3744 -1.0 -4.2 Disulfide bond formation protein DsbB compare
Psest_2324 -1.0 -6.5 hypothetical protein compare
Psest_0707 -1.0 -5.0 MYND finger. compare
Psest_3943 -1.0 -2.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3001 -1.0 -3.4 molybdenum ABC transporter, ATP-binding protein compare
Psest_0869 -1.0 -1.4 Acetyltransferase (isoleucine patch superfamily) compare
Psest_3719 -1.0 -6.2 type IV pilus assembly protein PilM compare
Psest_2358 -1.0 -1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4315 -1.0 -1.8 ABC-type metal ion transport system, permease component compare
Psest_1741 -1.0 -1.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4267 -1.0 -3.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2945 -1.0 -0.8 septum site-determining protein MinC compare
Psest_0426 -1.0 -2.7 Transposase and inactivated derivatives compare
Psest_1082 -1.0 -2.4 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0182 -1.0 -3.8 glycine cleavage system H protein compare
Psest_4371 -1.0 -1.5 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0737 -1.0 -0.8 Cu(I)-responsive transcriptional regulator compare
Psest_0706 -1.0 -6.2 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_2325 -1.0 -4.0 alpha-L-glutamate ligase-related protein compare
Psest_3287 -1.0 -3.5 Type II secretory pathway, component PulF compare
Psest_1940 -1.0 -2.4 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_1315 -1.0 -1.4 hypothetical protein compare
Psest_3174 -1.0 -6.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_0533 -0.9 -3.6 Sel1 repeat. compare
Psest_1242 -0.9 -1.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1819 -0.9 -6.9 Nucleoside-diphosphate-sugar epimerases compare
Psest_1167 -0.9 -0.8 hypothetical protein compare
Psest_2935 -0.9 -3.3 hypothetical protein compare
Psest_1717 -0.9 -2.4 benzoate transporter compare
Psest_3173 -0.9 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_1260 -0.9 -3.7 type IV pilus biogenesis/stability protein PilW compare
Psest_1176 -0.9 -2.0 Urea transporter compare
Psest_2933 -0.9 -5.4 Signal transduction histidine kinase compare
Psest_0575 -0.9 -0.6 HrpA-like helicases compare
Psest_0678 -0.9 -2.8 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_0218 -0.9 -2.5 Acyl-CoA hydrolase compare
Psest_3158 -0.9 -2.8 hypothetical protein compare
Psest_0445 -0.9 -5.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3698 -0.9 -3.6 Predicted exporter compare
Psest_3303 -0.9 -2.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2136 -0.9 -2.9 Predicted homoserine dehydrogenase compare
Psest_0593 -0.9 -4.7 Protein of unknown function (DUF2933). compare
Psest_0281 -0.9 -4.9 Dynamin family. compare
Psest_0831 -0.9 -0.9 hypothetical protein compare
Psest_0086 -0.9 -2.1 hypothetical protein compare
Psest_1406 -0.9 -3.1 His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_1139 -0.9 -2.9 PAS domain S-box compare
Psest_0285 -0.9 -4.9 pilus retraction protein PilT compare
Psest_2981 -0.9 -1.4 sodium pump decarboxylases, gamma subunit compare
Psest_3183 -0.9 -3.9 hypothetical protein compare
Psest_2748 -0.9 -1.1 Transcriptional regulator compare
Psest_0958 -0.9 -3.5 Oligoketide cyclase/lipid transport protein compare
Psest_0310 -0.8 -1.9 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2243 -0.8 -0.8 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3374 -0.8 -5.3 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_4346 -0.8 -2.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0631 -0.8 -5.0 Site-specific recombinase XerD compare
Psest_3299 -0.8 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_1958 -0.8 -2.0 Glutaredoxin-like domain (DUF836). compare
Psest_2225 -0.8 -2.1 Diacylglycerol kinase compare
Psest_1812 -0.8 -4.2 pseudaminic acid CMP-transferase compare
Psest_0078 -0.8 -0.9 hypothetical protein compare
Psest_2253 -0.8 -1.9 small redox-active disulfide protein 2 compare
Psest_3645 -0.8 -4.8 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0161 -0.8 -1.4 Membrane-bound metallopeptidase compare
Psest_3752 -0.8 -3.2 hypothetical protein compare
Psest_3853 -0.8 -1.3 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2771 -0.8 -1.8 Predicted membrane protein compare
Psest_0186 -0.8 -2.7 Protein-disulfide isomerase compare
Psest_1125 -0.8 -3.1 Protein of unknown function (DUF3509). compare
Psest_1963 -0.8 -1.5 Peptidase inhibitor I78 family. compare
Psest_3323 -0.8 -3.3 ribonuclease, Rne/Rng family compare
Psest_1692 -0.8 -3.6 conserved hypothetical protein, YceG family compare
Psest_0050 -0.8 -2.8 Predicted acetyltransferase compare
Psest_2323 -0.8 -3.9 Uncharacterized protein conserved in archaea compare
Psest_0705 -0.8 -5.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2766 -0.8 -0.7 hypothetical protein compare
Psest_3715 -0.8 -6.0 type IV pilus secretin (or competence protein) PilQ compare
Psest_1823 -0.8 -4.8 Nucleoside-diphosphate-sugar epimerases compare
Psest_4010 -0.8 -0.8 peroxiredoxin, OsmC subfamily compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms