Experiment set16IT056 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrate; anaerobic; cobalt stress sample3

200 most important genes:

  gene name fitness t score description  
Psest_2088 -5.1 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_2988 -4.7 -9.4 aspartate kinase, monofunctional class compare
Psest_3480 -4.1 -3.3 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_2584 -3.7 -6.1 Phosphoribosylanthranilate isomerase compare
Psest_3650 -3.6 -12.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3648 -3.5 -7.0 anthranilate phosphoribosyltransferase compare
Psest_1115 -3.4 -3.1 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0296 -3.3 -11.8 glutathione synthetase, prokaryotic compare
Psest_3998 -3.3 -5.4 glutamate--cysteine ligase compare
Psest_0845 -3.2 -0.8 hypothetical protein compare
Psest_3168 -3.1 -3.1 Molybdopterin converting factor, large subunit compare
Psest_1473 -3.0 -7.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1679 -3.0 -2.3 ribonuclease, Rne/Rng family compare
Psest_0799 -2.8 -5.6 Uncharacterized protein involved in response to NO compare
Psest_3479 -2.8 -6.2 molybdenum cofactor synthesis domain compare
Psest_3490 -2.8 -4.9 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_2234 -2.8 -13.9 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3384 -2.7 -8.5 glutamate 5-kinase compare
Psest_3377 -2.6 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3647 -2.6 -2.5 Indole-3-glycerol phosphate synthase compare
Psest_0508 -2.5 -8.6 gamma-glutamyl phosphate reductase compare
Psest_1292 -2.4 -7.6 monothiol glutaredoxin, Grx4 family compare
Psest_3483 -2.3 -7.3 respiratory nitrate reductase, gamma subunit compare
Psest_1961 -2.3 -11.1 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3301 -2.2 -4.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_0790 -2.2 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_2999 -2.2 -6.2 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_3649 -2.1 -8.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1417 -2.1 -2.3 hypothetical protein compare
Psest_0831 -2.0 -1.4 hypothetical protein compare
Psest_3170 -2.0 -6.9 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0466 -2.0 -3.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0958 -1.9 -5.9 Oligoketide cyclase/lipid transport protein compare
Psest_0393 -1.9 -3.9 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3762 -1.9 -4.9 iron donor protein CyaY compare
Psest_0954 -1.9 -7.9 Fe-S oxidoreductase compare
Psest_1505 -1.9 -2.4 Organic radical activating enzymes compare
Psest_0193 -1.9 -1.5 conserved hypothetical protein compare
Psest_3486 -1.8 -11.9 respiratory nitrate reductase, alpha subunit compare
Psest_1657 -1.8 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1643 -1.8 -0.9 hypothetical protein compare
Psest_2325 -1.8 -7.6 alpha-L-glutamate ligase-related protein compare
Psest_2104 -1.8 -1.2 IscR-regulated protein YhgI compare
Psest_2579 -1.8 -1.7 amidophosphoribosyltransferase compare
Psest_0827 -1.7 -11.7 Nitric oxide reductase large subunit compare
Psest_1814 -1.7 -10.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0837 -1.7 -3.5 Putative lipid carrier protein compare
Psest_0826 -1.7 -7.5 Cytochrome c compare
Psest_1663 -1.7 -2.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0953 -1.7 -7.1 iron-sulfur cluster-binding protein compare
Psest_0144 -1.7 -4.4 Fe-S cluster protector protein compare
Psest_3000 -1.7 -7.8 molybdate ABC transporter, permease protein compare
Psest_1511 -1.6 -4.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3485 -1.6 -9.0 nitrate reductase, beta subunit compare
Psest_3766 -1.6 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3489 -1.6 -7.0 hypothetical protein compare
Psest_0613 -1.6 -7.4 hypothetical protein compare
Psest_3042 -1.6 -0.9 Nitrate reductase cytochrome c-type subunit compare
Psest_2067 -1.6 -1.7 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0191 -1.5 -0.8 PAS domain S-box compare
Psest_1813 -1.5 -7.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2714 -1.5 -1.4 7-cyano-7-deazaguanine reductase compare
Psest_1655 -1.5 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0297 -1.5 -3.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2324 -1.5 -8.0 hypothetical protein compare
Psest_3399 -1.5 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1805 -1.5 -2.5 integration host factor, beta subunit compare
Psest_0097 -1.5 -2.0 phosphonates metabolism transcriptional regulator PhnF compare
Psest_2645 -1.5 -4.8 Transcriptional regulator compare
Psest_2333 -1.5 -0.9 Protein of unknown function (DUF3359). compare
Psest_0820 -1.5 -3.5 hypothetical protein compare
Psest_3484 -1.4 -3.7 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_1249 -1.4 -4.4 serine O-acetyltransferase compare
Psest_1659 -1.4 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0615 -1.3 -8.8 RND family efflux transporter, MFP subunit conserved
Psest_0062 -1.3 -2.1 tryptophan synthase, alpha subunit compare
Psest_0013 -1.3 -4.2 Lauroyl/myristoyl acyltransferase compare
Psest_0988 -1.3 -2.2 Protein of unknown function (DUF2845). compare
Psest_1809 -1.3 -5.4 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1167 -1.3 -0.9 hypothetical protein compare
Psest_2329 -1.3 -7.6 Transcriptional regulator compare
Psest_2285 -1.3 -2.7 ATP-dependent protease La compare
Psest_0152 -1.3 -3.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_1597 -1.2 -3.2 Protein of unknown function (DUF2933). compare
Psest_0796 -1.2 -3.0 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_3843 -1.2 -5.9 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0987 -1.2 -2.2 Predicted periplasmic or secreted lipoprotein compare
Psest_2243 -1.2 -1.0 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1656 -1.2 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0687 -1.2 -5.4 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0170 -1.2 -4.2 5,10-methenyltetrahydrofolate synthetase compare
Psest_0828 -1.2 -3.4 Nitric oxide reductase activation protein compare
Psest_1516 -1.2 -1.7 Uncharacterized lipoprotein compare
Psest_2758 -1.2 -1.9 Predicted transcriptional regulators compare
Psest_2323 -1.2 -5.7 Uncharacterized protein conserved in archaea compare
Psest_1837 -1.2 -3.3 Endoglucanase compare
Psest_0678 -1.2 -3.3 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_1295 -1.1 -3.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3678 -1.1 -2.9 acyl-phosphate glycerol 3-phosphate acyltransferase compare
Psest_0823 -1.1 -2.6 Transcriptional regulators compare
Psest_2809 -1.1 -2.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0616 -1.1 -8.9 heavy metal efflux pump (cobalt-zinc-cadmium) conserved
Psest_3226 -1.1 -0.8 Predicted membrane protein compare
Psest_2757 -1.1 -1.1 hypothetical protein compare
Psest_0520 -1.1 -0.7 hypothetical protein compare
Psest_2909 -1.1 -2.5 hypothetical protein compare
Psest_3322 -1.1 -7.5 TIGR02099 family protein compare
Psest_3853 -1.1 -1.8 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0817 -1.1 -5.4 Ethylbenzene dehydrogenase. compare
Psest_0814 -1.1 -1.5 MoxR-like ATPases compare
Psest_1012 -1.1 -2.5 Signal transduction histidine kinase compare
Psest_0835 -1.1 -6.5 Collagenase and related proteases compare
Psest_0300 -1.0 -5.1 Methyl-accepting chemotaxis protein compare
Psest_2023 -1.0 -1.8 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3001 -1.0 -3.6 molybdenum ABC transporter, ATP-binding protein compare
Psest_2973 -1.0 -3.7 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_3488 -1.0 -1.9 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0614 -1.0 -8.0 Outer membrane protein compare
Psest_3069 -1.0 -2.0 3-oxoadipate enol-lactonase compare
Psest_2786 -1.0 -1.0 Domain of unknown function (DUF3597). compare
Psest_0334 -1.0 -1.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1031 -1.0 -4.3 Uncharacterized protein conserved in bacteria compare
Psest_2491 -1.0 -3.8 succinyl-CoA synthetase, beta subunit compare
Psest_0155 -1.0 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1532 -1.0 -2.2 DNA recombination-dependent growth factor C compare
Psest_3299 -1.0 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2744 -1.0 -1.2 Uncharacterized conserved protein compare
Psest_0815 -1.0 -6.4 Cytochrome c, mono- and diheme variants compare
Psest_3721 -1.0 -4.1 Malic enzyme compare
Psest_0533 -1.0 -2.7 Sel1 repeat. compare
Psest_2278 -1.0 -2.5 coenzyme PQQ biosynthesis protein PqqD compare
Psest_2935 -1.0 -1.4 hypothetical protein compare
Psest_2460 -1.0 -1.3 hypothetical protein compare
Psest_3270 -1.0 -1.2 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_1989 -0.9 -3.2 Transcriptional regulators compare
Psest_3112 -0.9 -2.7 electron transport complex, RnfABCDGE type, A subunit compare
Psest_2650 -0.9 -1.6 hypothetical protein compare
Psest_0952 -0.9 -1.7 Uncharacterized conserved protein compare
Psest_0821 -0.9 -5.3 Cytochrome D1 heme domain. compare
Psest_4310 -0.9 -1.2 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3565 -0.9 -0.8 hypothetical protein compare
Psest_1142 -0.9 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_0811 -0.9 -4.6 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_3298 -0.9 -5.1 histidinol dehydrogenase compare
Psest_2718 -0.9 -0.9 hypothetical protein compare
Psest_2724 -0.9 -1.8 hypothetical protein compare
Psest_1974 -0.9 -1.8 integration host factor, alpha subunit compare
Psest_1940 -0.9 -3.0 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_4345 -0.9 -3.2 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3190 -0.9 -3.1 pyruvate kinase compare
Psest_1293 -0.9 -1.4 VanZ like family. compare
Psest_0836 -0.9 -3.4 Collagenase and related proteases compare
Psest_3720 -0.9 -4.9 penicillin-binding protein, 1A family compare
Psest_2626 -0.9 -1.2 Flp pilus assembly protein CpaB compare
Psest_3936 -0.9 -3.2 ATP-dependent protease HslVU, peptidase subunit compare
Psest_3174 -0.9 -5.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2566 -0.9 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_2945 -0.9 -0.6 septum site-determining protein MinC compare
Psest_0309 -0.9 -0.5 RND family efflux transporter, MFP subunit compare
Psest_0722 -0.8 -3.6 Predicted ATPase compare
Psest_0186 -0.8 -2.6 Protein-disulfide isomerase compare
Psest_2083 -0.8 -2.5 Putative sterol carrier protein compare
Psest_2434 -0.8 -1.7 Protein of unknown function (DUF2892). compare
Psest_1870 -0.8 -1.0 Transcriptional regulators compare
Psest_3092 -0.8 -1.0 ribonuclease III, bacterial compare
Psest_2293 -0.8 -1.0 hypothetical protein compare
Psest_1248 -0.8 -3.5 RNA methyltransferase, TrmH family, group 1 compare
Psest_0164 -0.8 -0.5 Glutaredoxin, GrxC family compare
Psest_4243 -0.8 -1.3 type VI secretion lipoprotein, VC_A0113 family compare
Psest_0257 -0.8 -1.3 Predicted Zn-dependent peptidases compare
Psest_2136 -0.8 -2.2 Predicted homoserine dehydrogenase compare
Psest_1907 -0.8 -0.9 hypothetical protein compare
Psest_1641 -0.8 -4.0 MazG family protein compare
Psest_4128 -0.8 -0.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3482 -0.8 -2.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0153 -0.8 -4.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_4371 -0.8 -1.3 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0498 -0.8 -0.5 ribosome small subunit-dependent GTPase A compare
Psest_3167 -0.8 -4.0 hypothetical protein compare
Psest_4132 -0.8 -2.1 alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) compare
Psest_2715 -0.8 -3.7 ABC-type polysaccharide/polyol phosphate export systems, permease component compare
Psest_3546 -0.8 -0.6 Phosphatidylglycerophosphatase A and related proteins compare
Psest_0969 -0.8 -1.2 transcription elongation factor GreA compare
Psest_3045 -0.8 -1.1 Cold shock proteins compare
Psest_1691 -0.8 -1.7 aminodeoxychorismate lyase compare
Psest_1326 -0.8 -2.1 Uncharacterized conserved protein compare
Psest_2967 -0.8 -2.0 flagellar basal-body rod protein FlgC compare
Psest_3575 -0.8 -3.2 Arabinose efflux permease compare
Psest_3207 -0.8 -2.5 HopJ type III effector protein. compare
Psest_2490 -0.8 -4.5 succinyl-CoA synthetase, alpha subunit compare
Psest_0409 -0.8 -1.8 Putative homoserine kinase type II (protein kinase fold) compare
Psest_2538 -0.8 -0.9 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2446 -0.7 -1.0 acetyl-CoA acetyltransferases compare
Psest_3117 -0.7 -2.1 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0207 -0.7 -1.7 hypothetical protein compare
Psest_1812 -0.7 -3.2 pseudaminic acid CMP-transferase compare
Psest_3323 -0.7 -2.7 ribonuclease, Rne/Rng family compare
Psest_3535 -0.7 -1.4 hypothetical protein compare
Psest_1241 -0.7 -3.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3895 -0.7 -1.8 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas stutzeri RCH2

For stress Cobalt chloride hexahydrate across organisms