Experiment set16IT054 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrate; anaerobic; cobalt stress sample1

200 most important genes:

  gene name fitness t score description  
Psest_3650 -4.1 -12.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1473 -4.0 -7.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2988 -3.8 -11.3 aspartate kinase, monofunctional class compare
Psest_3479 -3.6 -9.7 molybdenum cofactor synthesis domain compare
Psest_2584 -3.6 -7.4 Phosphoribosylanthranilate isomerase compare
Psest_3648 -3.4 -8.3 anthranilate phosphoribosyltransferase compare
Psest_2234 -3.4 -15.0 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3565 -3.2 -1.4 hypothetical protein compare
Psest_3480 -3.1 -3.1 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1292 -3.1 -7.6 monothiol glutaredoxin, Grx4 family compare
Psest_0296 -3.1 -12.5 glutathione synthetase, prokaryotic compare
Psest_0508 -3.0 -9.3 gamma-glutamyl phosphate reductase compare
Psest_3168 -2.9 -3.5 Molybdopterin converting factor, large subunit compare
Psest_3647 -2.9 -2.0 Indole-3-glycerol phosphate synthase compare
Psest_3170 -2.8 -8.4 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1920 -2.7 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3998 -2.7 -8.3 glutamate--cysteine ligase compare
Psest_1961 -2.7 -13.5 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_0799 -2.7 -3.6 Uncharacterized protein involved in response to NO compare
Psest_3301 -2.6 -4.2 Predicted transcriptional regulator, BolA superfamily compare
Psest_3649 -2.4 -9.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0952 -2.3 -2.8 Uncharacterized conserved protein compare
Psest_3384 -2.3 -8.4 glutamate 5-kinase compare
Psest_0393 -2.3 -4.6 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0845 -2.3 -0.8 hypothetical protein compare
Psest_3483 -2.2 -6.6 respiratory nitrate reductase, gamma subunit compare
Psest_0257 -2.1 -2.5 Predicted Zn-dependent peptidases compare
Psest_1724 -2.1 -4.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3486 -2.0 -13.4 respiratory nitrate reductase, alpha subunit compare
Psest_0958 -2.0 -6.4 Oligoketide cyclase/lipid transport protein compare
Psest_2579 -1.9 -1.3 amidophosphoribosyltransferase compare
Psest_1417 -1.9 -2.3 hypothetical protein compare
Psest_3092 -1.9 -1.8 ribonuclease III, bacterial compare
Psest_2590 -1.9 -1.3 3-isopropylmalate dehydratase, small subunit compare
Psest_0716 -1.9 -2.2 Protein of unknown function (DUF3094). compare
Psest_2104 -1.9 -1.2 IscR-regulated protein YhgI compare
Psest_3490 -1.8 -3.5 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_3485 -1.8 -9.4 nitrate reductase, beta subunit compare
Psest_0144 -1.8 -5.6 Fe-S cluster protector protein compare
Psest_1511 -1.8 -4.0 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0520 -1.8 -1.0 hypothetical protein compare
Psest_0828 -1.8 -6.2 Nitric oxide reductase activation protein compare
Psest_2325 -1.8 -6.5 alpha-L-glutamate ligase-related protein compare
Psest_0687 -1.8 -8.7 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3000 -1.8 -6.1 molybdate ABC transporter, permease protein compare
Psest_0826 -1.7 -7.3 Cytochrome c compare
Psest_3146 -1.7 -2.0 hypothetical protein compare
Psest_1657 -1.7 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1505 -1.7 -2.0 Organic radical activating enzymes compare
Psest_1496 -1.7 -1.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_0953 -1.7 -6.7 iron-sulfur cluster-binding protein compare
Psest_0827 -1.7 -11.2 Nitric oxide reductase large subunit compare
Psest_1814 -1.7 -10.3 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1884 -1.7 -2.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0155 -1.7 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0152 -1.6 -6.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_3843 -1.6 -8.3 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3766 -1.6 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_3762 -1.6 -4.7 iron donor protein CyaY compare
Psest_1660 -1.6 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3960 -1.6 -1.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3488 -1.6 -3.4 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1659 -1.6 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3484 -1.6 -3.8 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_1679 -1.6 -1.7 ribonuclease, Rne/Rng family compare
Psest_0820 -1.5 -4.2 hypothetical protein compare
Psest_2999 -1.5 -5.0 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_1663 -1.5 -3.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3938 -1.5 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_2324 -1.5 -8.5 hypothetical protein compare
Psest_0153 -1.5 -8.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0466 -1.5 -3.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0954 -1.5 -6.6 Fe-S oxidoreductase compare
Psest_1870 -1.4 -1.5 Transcriptional regulators compare
Psest_0835 -1.4 -8.9 Collagenase and related proteases compare
Psest_1655 -1.4 -3.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1813 -1.4 -7.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3943 -1.4 -3.6 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0988 -1.4 -3.2 Protein of unknown function (DUF2845). compare
Psest_3489 -1.4 -7.0 hypothetical protein compare
Psest_0823 -1.3 -3.8 Transcriptional regulators compare
Psest_3921 -1.3 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_1242 -1.3 -2.0 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_4345 -1.3 -5.4 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2329 -1.3 -8.7 Transcriptional regulator compare
Psest_1974 -1.3 -2.6 integration host factor, alpha subunit compare
Psest_3270 -1.3 -1.6 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0708 -1.3 -1.3 outer membrane assembly lipoprotein YfiO compare
Psest_0959 -1.3 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_2293 -1.3 -1.4 hypothetical protein compare
Psest_1805 -1.3 -1.9 integration host factor, beta subunit compare
Psest_0836 -1.2 -5.3 Collagenase and related proteases compare
Psest_3299 -1.2 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_4064 -1.2 -3.2 Lactate dehydrogenase and related dehydrogenases compare
Psest_0299 -1.2 -3.6 Chemotaxis signal transduction protein compare
Psest_2308 -1.2 -1.0 Predicted Fe-S protein compare
Psest_3042 -1.2 -1.1 Nitrate reductase cytochrome c-type subunit compare
Psest_2083 -1.2 -4.8 Putative sterol carrier protein compare
Psest_1691 -1.2 -2.1 aminodeoxychorismate lyase compare
Psest_0613 -1.1 -4.8 hypothetical protein compare
Psest_0298 -1.1 -3.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2561 -1.1 -0.9 hypothetical protein compare
Psest_0790 -1.1 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_0821 -1.1 -6.7 Cytochrome D1 heme domain. compare
Psest_1486 -1.1 -2.6 hypothetical protein compare
Psest_4003 -1.1 -3.6 TIGR00153 family protein compare
Psest_3322 -1.1 -7.6 TIGR02099 family protein compare
Psest_1249 -1.1 -2.8 serine O-acetyltransferase compare
Psest_3117 -1.1 -2.6 electron transport complex, RnfABCDGE type, E subunit compare
Psest_2591 -1.1 -2.3 3-isopropylmalate dehydratase, large subunit compare
Psest_0601 -1.1 -2.4 hypothetical protein compare
Psest_2810 -1.1 -2.9 5'/3'-nucleotidase SurE compare
Psest_2280 -1.1 -3.1 Predicted membrane protein compare
Psest_2092 -1.0 -2.6 hypothetical protein compare
Psest_0817 -1.0 -5.4 Ethylbenzene dehydrogenase. compare
Psest_2771 -1.0 -2.3 Predicted membrane protein compare
Psest_3865 -1.0 -3.4 Predicted integral membrane protein (DUF2269). compare
Psest_3113 -1.0 -1.7 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3298 -1.0 -4.6 histidinol dehydrogenase compare
Psest_2470 -1.0 -1.4 hypothetical protein compare
Psest_1824 -1.0 -1.8 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0837 -1.0 -1.7 Putative lipid carrier protein compare
Psest_3001 -1.0 -2.4 molybdenum ABC transporter, ATP-binding protein compare
Psest_3720 -1.0 -5.3 penicillin-binding protein, 1A family compare
Psest_1001 -1.0 -2.3 hypothetical protein compare
Psest_3575 -1.0 -3.8 Arabinose efflux permease compare
Psest_4126 -1.0 -2.0 Predicted peroxiredoxins compare
Psest_2716 -1.0 -2.2 ABC-type multidrug transport system, ATPase component compare
Psest_3944 -1.0 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0614 -1.0 -7.4 Outer membrane protein compare
Psest_0062 -1.0 -2.4 tryptophan synthase, alpha subunit compare
Psest_0170 -0.9 -2.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_0212 -0.9 -1.3 exodeoxyribonuclease V, gamma subunit compare
Psest_3084 -0.9 -1.4 methyltransferase, putative compare
Psest_3487 -0.9 -5.1 Nitrate/nitrite transporter compare
Psest_1231 -0.9 -4.7 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_2490 -0.9 -4.8 succinyl-CoA synthetase, alpha subunit compare
Psest_2122 -0.9 -1.1 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1115 -0.9 -0.9 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1958 -0.9 -2.4 Glutaredoxin-like domain (DUF836). compare
Psest_0609 -0.9 -1.4 hypothetical protein compare
Psest_0616 -0.9 -7.3 heavy metal efflux pump (cobalt-zinc-cadmium) conserved
Psest_1142 -0.9 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1752 -0.9 -1.4 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_3818 -0.9 -3.6 endoribonuclease L-PSP, putative compare
Psest_0533 -0.9 -3.6 Sel1 repeat. compare
Psest_2645 -0.9 -3.3 Transcriptional regulator compare
Psest_3112 -0.9 -2.8 electron transport complex, RnfABCDGE type, A subunit compare
Psest_3069 -0.9 -1.7 3-oxoadipate enol-lactonase compare
Psest_0537 -0.9 -1.3 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_2333 -0.9 -0.7 Protein of unknown function (DUF3359). compare
Psest_1774 -0.9 -1.2 Glutathione peroxidase compare
Psest_1762 -0.9 -1.7 cytochrome c-type biogenesis protein CcmI compare
Psest_1295 -0.9 -2.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1819 -0.9 -6.5 Nucleoside-diphosphate-sugar epimerases compare
Psest_4316 -0.9 -2.3 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_2885 -0.9 -1.1 Acyl carrier protein compare
Psest_2964 -0.9 -3.5 flagellar basal-body rod protein FlgF compare
Psest_0615 -0.8 -5.2 RND family efflux transporter, MFP subunit conserved
Psest_1997 -0.8 -1.1 6-phosphogluconolactonase compare
Psest_1139 -0.8 -2.4 PAS domain S-box compare
Psest_1809 -0.8 -3.8 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_2786 -0.8 -0.8 Domain of unknown function (DUF3597). compare
Psest_0814 -0.8 -1.2 MoxR-like ATPases compare
Psest_0815 -0.8 -5.3 Cytochrome c, mono- and diheme variants compare
Psest_2268 -0.8 -2.1 Alcohol dehydrogenase, class IV compare
Psest_4078 -0.8 -1.1 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1388 -0.8 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_2725 -0.8 -1.5 hypothetical protein compare
Psest_3449 -0.8 -1.7 DJ-1 family protein compare
Psest_0811 -0.8 -4.9 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_3399 -0.8 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_2798 -0.8 -2.0 Truncated hemoglobins compare
Psest_0722 -0.8 -3.5 Predicted ATPase compare
Psest_3913 -0.8 -2.2 hypothetical protein compare
Psest_0013 -0.8 -2.5 Lauroyl/myristoyl acyltransferase compare
Psest_4128 -0.8 -1.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2864 -0.8 -2.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0797 -0.8 -4.9 Predicted lipoprotein involved in nitrous oxide reduction compare
Psest_0175 -0.8 -3.5 Xaa-Pro aminopeptidase compare
Psest_3231 -0.8 -1.8 hypothetical protein compare
Psest_2285 -0.8 -2.1 ATP-dependent protease La compare
Psest_3853 -0.8 -1.2 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_1957 -0.8 -4.7 outer membrane porin, OprD family. compare
Psest_1904 -0.8 -2.8 Arabinose efflux permease compare
Psest_0016 -0.8 -2.2 ectoine/hydroxyectoine ABC transporter, ATP-binding protein compare
Psest_3736 -0.8 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2150 -0.8 -1.7 DNA polymerase LigD, polymerase domain compare
Psest_0919 -0.8 -2.0 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0796 -0.8 -1.8 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_0547 -0.8 -2.0 Urease accessory protein UreF compare
Psest_0855 -0.8 -2.6 NAD-dependent aldehyde dehydrogenases compare
Psest_3174 -0.7 -4.4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_1940 -0.7 -2.3 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_2243 -0.7 -0.7 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1963 -0.7 -2.1 Peptidase inhibitor I78 family. compare
Psest_2225 -0.7 -1.5 Diacylglycerol kinase compare
Psest_3482 -0.7 -2.6 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1055 -0.7 -4.6 Saccharopine dehydrogenase and related proteins compare
Psest_2343 -0.7 -1.7 Mg-dependent DNase compare


Specific Phenotypes

For 1 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas stutzeri RCH2

For stress Cobalt chloride hexahydrate across organisms