Experiment set16IT053 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrate; anaerobic sample3

200 most important genes:

  gene name fitness t score description  
Psest_2988 -4.2 -10.9 aspartate kinase, monofunctional class compare
Psest_3650 -4.1 -11.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3998 -3.6 -4.9 glutamate--cysteine ligase compare
Psest_1473 -3.5 -7.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2234 -3.4 -13.4 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3168 -3.1 -3.3 Molybdopterin converting factor, large subunit compare
Psest_3648 -3.1 -8.6 anthranilate phosphoribosyltransferase compare
Psest_0508 -3.0 -9.2 gamma-glutamyl phosphate reductase compare
Psest_3170 -2.9 -7.8 molybdenum cofactor biosynthesis protein MoaC compare
Psest_3649 -2.8 -11.0 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0393 -2.7 -7.8 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3384 -2.7 -8.5 glutamate 5-kinase compare
Psest_3647 -2.6 -3.1 Indole-3-glycerol phosphate synthase compare
Psest_0799 -2.6 -3.7 Uncharacterized protein involved in response to NO compare
Psest_1292 -2.6 -8.5 monothiol glutaredoxin, Grx4 family compare
Psest_2584 -2.5 -5.4 Phosphoribosylanthranilate isomerase compare
Psest_3483 -2.4 -9.4 respiratory nitrate reductase, gamma subunit compare
Psest_0954 -2.4 -8.1 Fe-S oxidoreductase compare
Psest_3479 -2.3 -8.7 molybdenum cofactor synthesis domain compare
Psest_0953 -2.3 -7.6 iron-sulfur cluster-binding protein compare
Psest_1961 -2.2 -9.9 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_0814 -2.2 -2.8 MoxR-like ATPases compare
Psest_0296 -2.2 -6.5 glutathione synthetase, prokaryotic compare
Psest_0826 -2.2 -10.3 Cytochrome c compare
Psest_0827 -2.2 -14.6 Nitric oxide reductase large subunit compare
Psest_1115 -2.1 -2.4 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_2329 -2.1 -12.3 Transcriptional regulator compare
Psest_1814 -2.1 -14.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1417 -2.0 -2.4 hypothetical protein compare
Psest_0144 -2.0 -4.8 Fe-S cluster protector protein compare
Psest_0958 -2.0 -5.8 Oligoketide cyclase/lipid transport protein compare
Psest_3485 -2.0 -11.9 nitrate reductase, beta subunit compare
Psest_1724 -2.0 -5.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3113 -2.0 -3.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0828 -2.0 -6.1 Nitric oxide reductase activation protein compare
Psest_3843 -2.0 -10.9 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2999 -1.9 -5.0 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_3490 -1.9 -3.5 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_1657 -1.9 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0952 -1.8 -2.6 Uncharacterized conserved protein compare
Psest_4406 -1.8 -1.6 hypothetical protein compare
Psest_3484 -1.8 -5.9 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3486 -1.8 -12.5 respiratory nitrate reductase, alpha subunit compare
Psest_4003 -1.8 -5.1 TIGR00153 family protein compare
Psest_2579 -1.7 -2.3 amidophosphoribosyltransferase compare
Psest_2104 -1.7 -1.1 IscR-regulated protein YhgI compare
Psest_1813 -1.7 -8.9 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3816 -1.7 -1.3 DNA-directed RNA polymerase, omega subunit compare
Psest_3301 -1.7 -3.4 Predicted transcriptional regulator, BolA superfamily compare
Psest_3092 -1.6 -1.8 ribonuclease III, bacterial compare
Psest_1295 -1.6 -4.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3531 -1.6 -1.6 Peptidase propeptide and YPEB domain. compare
Psest_3480 -1.6 -2.3 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1663 -1.6 -4.4 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_1496 -1.5 -1.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_0297 -1.5 -3.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1660 -1.5 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0969 -1.5 -2.1 transcription elongation factor GreA compare
Psest_1249 -1.5 -4.4 serine O-acetyltransferase compare
Psest_1656 -1.5 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2590 -1.5 -1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_0836 -1.5 -3.9 Collagenase and related proteases compare
Psest_0835 -1.4 -9.4 Collagenase and related proteases compare
Psest_0837 -1.4 -2.9 Putative lipid carrier protein compare
Psest_3185 -1.4 -1.9 MoxR-like ATPases compare
Psest_0155 -1.4 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1354 -1.4 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3745 -1.4 -3.2 Uncharacterized enzyme of heme biosynthesis compare
Psest_3488 -1.3 -3.9 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2766 -1.3 -1.1 hypothetical protein compare
Psest_4371 -1.3 -2.8 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0152 -1.3 -3.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_3828 -1.3 -1.3 zinc-binding alcohol dehydrogenase family protein compare
Psest_1498 -1.3 -2.2 tol-pal system-associated acyl-CoA thioesterase compare
Psest_2023 -1.3 -3.2 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_0193 -1.3 -1.2 conserved hypothetical protein compare
Psest_3489 -1.3 -7.6 hypothetical protein compare
Psest_4298 -1.3 -0.9 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3117 -1.3 -3.2 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0601 -1.3 -2.9 hypothetical protein compare
Psest_3112 -1.3 -3.6 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1012 -1.3 -2.7 Signal transduction histidine kinase compare
Psest_2122 -1.3 -1.3 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3938 -1.3 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_1986 -1.2 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_1511 -1.2 -2.8 Predicted redox protein, regulator of disulfide bond formation compare
Psest_2490 -1.2 -5.7 succinyl-CoA synthetase, alpha subunit compare
Psest_1655 -1.2 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2945 -1.2 -1.0 septum site-determining protein MinC compare
Psest_3146 -1.2 -1.9 hypothetical protein compare
Psest_0687 -1.2 -5.7 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0999 -1.2 -1.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1082 -1.1 -1.8 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1765 -1.1 -4.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2324 -1.1 -6.3 hypothetical protein compare
Psest_3944 -1.1 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3173 -1.1 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_2491 -1.1 -5.1 succinyl-CoA synthetase, beta subunit compare
Psest_1161 -1.1 -2.2 E3 Ubiquitin ligase. compare
Psest_3226 -1.1 -0.9 Predicted membrane protein compare
Psest_0153 -1.1 -6.4 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2538 -1.1 -1.7 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3720 -1.1 -6.9 penicillin-binding protein, 1A family compare
Psest_1659 -1.1 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1700 -1.1 -3.1 Transcriptional regulator compare
Psest_2278 -1.1 -2.6 coenzyme PQQ biosynthesis protein PqqD compare
Psest_2786 -1.1 -1.1 Domain of unknown function (DUF3597). compare
Psest_2744 -1.1 -1.3 Uncharacterized conserved protein compare
Psest_2935 -1.1 -3.2 hypothetical protein compare
Psest_3044 -1.1 -3.4 deoxycytidine triphosphate deaminase compare
Psest_3000 -1.1 -4.7 molybdate ABC transporter, permease protein compare
Psest_3031 -1.0 -0.6 hypothetical protein compare
Psest_0796 -1.0 -2.6 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_0609 -1.0 -1.5 hypothetical protein compare
Psest_2798 -1.0 -2.3 Truncated hemoglobins compare
Psest_1313 -1.0 -1.7 Uncharacterized conserved small protein compare
Psest_0740 -1.0 -1.6 Transcriptional regulator compare
Psest_0207 -1.0 -2.8 hypothetical protein compare
Psest_0257 -1.0 -2.0 Predicted Zn-dependent peptidases compare
Psest_2725 -1.0 -3.0 hypothetical protein compare
Psest_1805 -1.0 -2.0 integration host factor, beta subunit compare
Psest_0062 -1.0 -2.7 tryptophan synthase, alpha subunit compare
Psest_0334 -1.0 -2.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2325 -1.0 -3.6 alpha-L-glutamate ligase-related protein compare
Psest_1870 -1.0 -1.1 Transcriptional regulators compare
Psest_0031 -1.0 -1.2 Uncharacterized conserved protein compare
Psest_3129 -1.0 -0.8 tyrosine recombinase XerD compare
Psest_0310 -1.0 -2.3 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3862 -1.0 -6.7 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2810 -1.0 -3.1 5'/3'-nucleotidase SurE compare
Psest_3174 -0.9 -5.8 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3298 -0.9 -5.6 histidinol dehydrogenase compare
Psest_1782 -0.9 -1.9 Predicted transcriptional regulators compare
Psest_2135 -0.9 -2.2 Peroxiredoxin compare
Psest_0218 -0.9 -2.2 Acyl-CoA hydrolase compare
Psest_0537 -0.9 -1.3 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_4098 -0.9 -2.0 Superfamily I DNA and RNA helicases compare
Psest_0506 -0.9 -3.0 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Psest_1532 -0.9 -1.8 DNA recombination-dependent growth factor C compare
Psest_0013 -0.9 -2.2 Lauroyl/myristoyl acyltransferase compare
Psest_4078 -0.9 -1.3 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1815 -0.9 -5.8 pseudaminic acid synthase compare
Psest_0186 -0.9 -2.8 Protein-disulfide isomerase compare
Psest_1974 -0.9 -1.8 integration host factor, alpha subunit compare
Psest_0182 -0.9 -4.0 glycine cleavage system H protein compare
Psest_0852 -0.9 -2.5 glucose-6-phosphate 1-dehydrogenase compare
Psest_3777 -0.8 -2.0 diguanylate cyclase (GGDEF) domain compare
Psest_4363 -0.8 -4.1 ATPases involved in chromosome partitioning compare
Psest_0300 -0.8 -4.7 Methyl-accepting chemotaxis protein compare
Psest_4049 -0.8 -1.3 hypothetical protein compare
Psest_0426 -0.8 -3.0 Transposase and inactivated derivatives compare
Psest_3864 -0.8 -5.2 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2716 -0.8 -1.7 ABC-type multidrug transport system, ATPase component compare
Psest_2424 -0.8 -1.7 K+ transport systems, NAD-binding component compare
Psest_3231 -0.8 -1.9 hypothetical protein compare
Psest_4345 -0.8 -3.1 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2645 -0.8 -3.0 Transcriptional regulator compare
Psest_3299 -0.8 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3988 -0.8 -3.1 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_1679 -0.8 -1.1 ribonuclease, Rne/Rng family compare
Psest_2323 -0.8 -4.1 Uncharacterized protein conserved in archaea compare
Psest_1505 -0.8 -1.0 Organic radical activating enzymes compare
Psest_0299 -0.8 -2.7 Chemotaxis signal transduction protein compare
Psest_1695 -0.8 -2.1 Tfp pilus assembly protein PilZ compare
Psest_2580 -0.8 -3.4 Uncharacterized membrane protein, required for colicin V production compare
Psest_4316 -0.8 -2.2 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_4201 -0.8 -1.7 general secretion pathway protein F compare
Psest_0466 -0.8 -2.0 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3772 -0.8 -2.5 ammonium transporter compare
Psest_0830 -0.8 -4.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0015 -0.8 -1.6 Tetratricopeptide repeat. compare
Psest_0227 -0.8 -2.3 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_4221 -0.8 -1.9 homoserine kinase, Neisseria type compare
Psest_0533 -0.8 -2.3 Sel1 repeat. compare
Psest_1772 -0.7 -1.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0844 -0.7 -2.1 High-affinity Fe2+/Pb2+ permease compare
Psest_1812 -0.7 -3.8 pseudaminic acid CMP-transferase compare
Psest_0813 -0.7 -2.6 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_3575 -0.7 -4.1 Arabinose efflux permease compare
Psest_2304 -0.7 -0.8 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1479 -0.7 -1.7 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_3921 -0.7 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0320 -0.7 -2.7 ABC-type multidrug transport system, ATPase component compare
Psest_0442 -0.7 -1.6 ATPases of the AAA+ class compare
Psest_1907 -0.7 -0.9 hypothetical protein compare
Psest_0484 -0.7 -1.8 hypothetical protein compare
Psest_0955 -0.7 -2.2 D,L-lactate:H+ symporter (from data) compare
Psest_1741 -0.7 -0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3766 -0.7 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_4042 -0.7 -1.7 hypothetical protein compare
Psest_1103 -0.7 -1.6 GTP-binding protein YchF compare
Psest_3042 -0.7 -0.5 Nitrate reductase cytochrome c-type subunit compare
Psest_3838 -0.7 -1.8 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_1990 -0.7 -1.6 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_0820 -0.7 -1.8 hypothetical protein compare
Psest_0277 -0.7 -0.8 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3056 -0.7 -2.1 hypothetical protein compare
Psest_1809 -0.7 -3.3 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_2083 -0.7 -2.3 Putative sterol carrier protein compare
Psest_3806 -0.7 -3.3 Phosphomannomutase compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments