Experiment set16IT052 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrate; anaerobic sample2

200 most important genes:

  gene name fitness t score description  
Psest_1473 -3.9 -5.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2234 -3.3 -13.8 oxygen-independent coproporphyrinogen III oxidase compare
Psest_2988 -3.3 -9.4 aspartate kinase, monofunctional class compare
Psest_1115 -3.3 -4.0 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3650 -3.2 -13.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0508 -3.2 -8.7 gamma-glutamyl phosphate reductase compare
Psest_0952 -3.1 -4.1 Uncharacterized conserved protein compare
Psest_3168 -3.1 -3.4 Molybdopterin converting factor, large subunit compare
Psest_3998 -3.1 -5.9 glutamate--cysteine ligase compare
Psest_3648 -3.1 -8.4 anthranilate phosphoribosyltransferase compare
Psest_3384 -3.1 -7.3 glutamate 5-kinase compare
Psest_1292 -3.0 -8.1 monothiol glutaredoxin, Grx4 family compare
Psest_0826 -2.9 -11.7 Cytochrome c compare
Psest_3647 -2.9 -2.0 Indole-3-glycerol phosphate synthase compare
Psest_2584 -2.7 -7.2 Phosphoribosylanthranilate isomerase compare
Psest_0814 -2.6 -3.4 MoxR-like ATPases compare
Psest_1496 -2.5 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_2718 -2.5 -1.7 hypothetical protein compare
Psest_3649 -2.4 -10.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1961 -2.4 -11.9 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_0953 -2.3 -7.6 iron-sulfur cluster-binding protein compare
Psest_0958 -2.3 -6.6 Oligoketide cyclase/lipid transport protein compare
Psest_0827 -2.3 -15.9 Nitric oxide reductase large subunit compare
Psest_3485 -2.3 -14.2 nitrate reductase, beta subunit compare
Psest_3483 -2.3 -5.8 respiratory nitrate reductase, gamma subunit compare
Psest_2329 -2.2 -13.9 Transcriptional regulator compare
Psest_1814 -2.2 -14.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0845 -2.2 -0.9 hypothetical protein compare
Psest_2067 -2.2 -2.5 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0393 -2.1 -4.1 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0828 -2.1 -7.7 Nitric oxide reductase activation protein compare
Psest_0954 -2.1 -7.1 Fe-S oxidoreductase compare
Psest_0144 -2.1 -5.7 Fe-S cluster protector protein compare
Psest_3170 -2.0 -4.5 molybdenum cofactor biosynthesis protein MoaC compare
Psest_4128 -1.9 -2.2 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3486 -1.9 -14.0 respiratory nitrate reductase, alpha subunit compare
Psest_0799 -1.9 -4.7 Uncharacterized protein involved in response to NO compare
Psest_1167 -1.9 -1.3 hypothetical protein compare
Psest_3479 -1.9 -5.2 molybdenum cofactor synthesis domain compare
Psest_0062 -1.8 -1.8 tryptophan synthase, alpha subunit compare
Psest_1813 -1.8 -10.2 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3843 -1.8 -9.5 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2579 -1.7 -2.0 amidophosphoribosyltransferase compare
Psest_4003 -1.7 -6.1 TIGR00153 family protein compare
Psest_2104 -1.7 -1.1 IscR-regulated protein YhgI compare
Psest_1082 -1.7 -3.0 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2744 -1.7 -2.1 Uncharacterized conserved protein compare
Psest_0296 -1.7 -5.1 glutathione synthetase, prokaryotic compare
Psest_3113 -1.7 -2.6 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3301 -1.7 -2.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_1540 -1.7 -1.5 biotin-dependent carboxylase uncharacterized domain compare
Psest_1463 -1.6 -1.0 SufE protein probably involved in Fe-S center assembly compare
Psest_0837 -1.6 -3.4 Putative lipid carrier protein compare
Psest_1660 -1.5 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1663 -1.5 -4.1 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0687 -1.5 -7.5 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3484 -1.5 -4.8 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_0844 -1.5 -3.0 High-affinity Fe2+/Pb2+ permease compare
Psest_2225 -1.5 -3.7 Diacylglycerol kinase compare
Psest_1724 -1.4 -3.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0835 -1.4 -8.9 Collagenase and related proteases compare
Psest_1230 -1.4 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_3943 -1.4 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2243 -1.4 -1.1 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2626 -1.3 -1.9 Flp pilus assembly protein CpaB compare
Psest_1655 -1.3 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0155 -1.3 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1656 -1.3 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3489 -1.3 -7.8 hypothetical protein compare
Psest_1920 -1.3 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1282 -1.3 -2.2 Amidases related to nicotinamidase compare
Psest_0836 -1.3 -5.7 Collagenase and related proteases compare
Psest_2491 -1.2 -4.8 succinyl-CoA synthetase, beta subunit compare
Psest_0466 -1.2 -2.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1532 -1.2 -2.9 DNA recombination-dependent growth factor C compare
Psest_1249 -1.2 -4.1 serine O-acetyltransferase compare
Psest_1295 -1.2 -4.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4315 -1.2 -1.8 ABC-type metal ion transport system, permease component compare
Psest_0313 -1.2 -4.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2945 -1.2 -1.0 septum site-determining protein MinC compare
Psest_1518 -1.2 -2.6 tRNA_Ser_CGA compare
Psest_4345 -1.2 -4.9 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2123 -1.2 -1.6 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_1511 -1.2 -3.2 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3766 -1.2 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1012 -1.1 -2.8 Signal transduction histidine kinase compare
Psest_0193 -1.1 -1.6 conserved hypothetical protein compare
Psest_3044 -1.1 -4.3 deoxycytidine triphosphate deaminase compare
Psest_1622 -1.1 -3.2 hypothetical protein compare
Psest_3069 -1.1 -2.3 3-oxoadipate enol-lactonase compare
Psest_1657 -1.1 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0060 -1.1 -1.7 Predicted Fe-S protein compare
Psest_0823 -1.1 -2.5 Transcriptional regulators compare
Psest_2999 -1.1 -3.7 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_0722 -1.1 -4.6 Predicted ATPase compare
Psest_2613 -1.1 -1.2 hypothetical protein compare
Psest_1805 -1.1 -2.0 integration host factor, beta subunit compare
Psest_0575 -1.1 -0.7 HrpA-like helicases compare
Psest_0152 -1.1 -3.0 Imidazoleglycerol-phosphate dehydratase compare
Psest_2266 -1.1 -2.4 hypothetical protein compare
Psest_3480 -1.1 -1.3 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_4126 -1.0 -2.5 Predicted peroxiredoxins compare
Psest_1466 -1.0 -2.9 transcriptional regulator, Spx/MgsR family compare
Psest_0609 -1.0 -1.7 hypothetical protein compare
Psest_3862 -1.0 -7.4 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3762 -1.0 -3.7 iron donor protein CyaY compare
Psest_2173 -1.0 -3.3 competence/damage-inducible protein CinA C-terminal domain compare
Psest_3000 -1.0 -4.4 molybdate ABC transporter, permease protein compare
Psest_2872 -1.0 -1.1 protein RecA compare
Psest_3816 -1.0 -1.0 DNA-directed RNA polymerase, omega subunit compare
Psest_3565 -1.0 -1.1 hypothetical protein compare
Psest_3720 -1.0 -6.3 penicillin-binding protein, 1A family compare
Psest_3092 -1.0 -1.2 ribonuclease III, bacterial compare
Psest_3736 -1.0 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_4316 -1.0 -1.7 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_3323 -1.0 -3.3 ribonuclease, Rne/Rng family compare
Psest_3809 -1.0 -2.8 hypothetical protein compare
Psest_3001 -1.0 -3.4 molybdenum ABC transporter, ATP-binding protein compare
Psest_0516 -1.0 -4.7 D-alanyl-D-alanine carboxypeptidase compare
Psest_2088 -1.0 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_0959 -0.9 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0153 -0.9 -5.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_1242 -0.9 -1.6 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0855 -0.9 -2.3 NAD-dependent aldehyde dehydrogenases compare
Psest_3146 -0.9 -1.2 hypothetical protein compare
Psest_0852 -0.9 -2.8 glucose-6-phosphate 1-dehydrogenase compare
Psest_0608 -0.9 -5.2 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Psest_2939 -0.9 -2.2 Predicted membrane protein compare
Psest_2490 -0.9 -4.2 succinyl-CoA synthetase, alpha subunit compare
Psest_1659 -0.9 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0843 -0.9 -4.2 hypothetical protein compare
Psest_3864 -0.9 -5.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2752 -0.9 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_1990 -0.8 -1.6 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_3174 -0.8 -5.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2324 -0.8 -4.5 hypothetical protein compare
Psest_0426 -0.8 -2.6 Transposase and inactivated derivatives compare
Psest_3299 -0.8 -4.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_1505 -0.8 -0.9 Organic radical activating enzymes compare
Psest_3050 -0.8 -2.0 tRNA_Gly_CCC compare
Psest_2424 -0.8 -1.2 K+ transport systems, NAD-binding component compare
Psest_1824 -0.8 -1.6 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2278 -0.8 -1.7 coenzyme PQQ biosynthesis protein PqqD compare
Psest_0820 -0.8 -2.7 hypothetical protein compare
Psest_2135 -0.8 -2.1 Peroxiredoxin compare
Psest_3488 -0.8 -2.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3860 -0.8 -1.2 Predicted permeases compare
Psest_1974 -0.8 -2.3 integration host factor, alpha subunit compare
Psest_2646 -0.8 -1.4 SOS regulatory protein LexA compare
Psest_3377 -0.8 -0.5 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3115 -0.8 -3.7 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0533 -0.8 -3.3 Sel1 repeat. compare
Psest_0300 -0.8 -4.8 Methyl-accepting chemotaxis protein compare
Psest_1424 -0.8 -1.9 Lipoate-protein ligase A compare
Psest_4314 -0.8 -2.4 ABC-type metal ion transport system, ATPase component compare
Psest_1986 -0.8 -0.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_2323 -0.8 -4.3 Uncharacterized protein conserved in archaea compare
Psest_1818 -0.8 -4.6 GDP-mannose 4,6-dehydratase compare
Psest_3938 -0.8 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_0299 -0.7 -1.5 Chemotaxis signal transduction protein compare
Psest_3944 -0.7 -1.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1417 -0.7 -1.3 hypothetical protein compare
Psest_0955 -0.7 -2.5 D,L-lactate:H+ symporter (from data) compare
Psest_2268 -0.7 -2.1 Alcohol dehydrogenase, class IV compare
Psest_3117 -0.7 -1.9 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0257 -0.7 -1.5 Predicted Zn-dependent peptidases compare
Psest_0815 -0.7 -4.7 Cytochrome c, mono- and diheme variants compare
Psest_1809 -0.7 -3.4 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_0601 -0.7 -1.0 hypothetical protein compare
Psest_2333 -0.7 -0.6 Protein of unknown function (DUF3359). compare
Psest_3921 -0.7 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_0624 -0.7 -4.3 hypothetical protein compare
Psest_0673 -0.7 -2.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_3112 -0.7 -2.1 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1700 -0.7 -1.9 Transcriptional regulator compare
Psest_1595 -0.7 -0.8 Copper chaperone compare
Psest_0442 -0.7 -1.9 ATPases of the AAA+ class compare
Psest_0817 -0.7 -3.6 Ethylbenzene dehydrogenase. compare
Psest_0020 -0.7 -2.5 K+ transport systems, NAD-binding component compare
Psest_3400 -0.7 -0.6 Copper resistance protein D. compare
Psest_2083 -0.7 -2.0 Putative sterol carrier protein compare
Psest_1870 -0.7 -0.9 Transcriptional regulators compare
Psest_2304 -0.7 -0.8 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3207 -0.7 -2.2 HopJ type III effector protein. compare
Psest_0161 -0.7 -1.2 Membrane-bound metallopeptidase compare
Psest_4021 -0.7 -1.9 hypothetical protein compare
Psest_2976 -0.7 -0.8 hypothetical protein compare
Psest_1527 -0.7 -4.9 Na+/proline symporter compare
Psest_2798 -0.7 -1.4 Truncated hemoglobins compare
Psest_1765 -0.7 -2.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3298 -0.7 -2.8 histidinol dehydrogenase compare
Psest_1815 -0.7 -4.3 pseudaminic acid synthase compare
Psest_3173 -0.7 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0993 -0.7 -3.6 Glucose-6-phosphate isomerase compare
Psest_1636 -0.7 -1.9 putative transporter, required for glycine utilization (from data) compare
Psest_2020 -0.7 -1.5 Uncharacterized protein involved in purine metabolism compare
Psest_0830 -0.7 -3.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3177 -0.7 -1.0 hypothetical protein compare
Psest_2449 -0.7 -3.5 Predicted membrane protein compare
Psest_0187 -0.7 -2.1 Metal-dependent hydrolase compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments