Experiment set16IT051 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrate; anaerobic sample1

200 most important genes:

  gene name fitness t score description  
Psest_2988 -4.7 -10.0 aspartate kinase, monofunctional class compare
Psest_2234 -3.8 -14.0 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3650 -3.5 -14.3 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3998 -3.4 -6.0 glutamate--cysteine ligase compare
Psest_3648 -3.2 -8.2 anthranilate phosphoribosyltransferase compare
Psest_3168 -3.1 -2.3 Molybdopterin converting factor, large subunit compare
Psest_0508 -3.1 -8.9 gamma-glutamyl phosphate reductase compare
Psest_1473 -3.1 -7.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2584 -3.0 -5.8 Phosphoribosylanthranilate isomerase compare
Psest_3384 -2.9 -8.2 glutamate 5-kinase compare
Psest_0826 -2.9 -12.0 Cytochrome c compare
Psest_3647 -2.9 -2.0 Indole-3-glycerol phosphate synthase compare
Psest_2067 -2.9 -3.0 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0814 -2.8 -4.0 MoxR-like ATPases compare
Psest_1292 -2.8 -8.0 monothiol glutaredoxin, Grx4 family compare
Psest_0799 -2.6 -4.5 Uncharacterized protein involved in response to NO compare
Psest_1961 -2.5 -10.3 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3483 -2.5 -9.8 respiratory nitrate reductase, gamma subunit compare
Psest_0828 -2.4 -6.7 Nitric oxide reductase activation protein compare
Psest_3170 -2.4 -7.6 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0296 -2.4 -8.4 glutathione synthetase, prokaryotic compare
Psest_0952 -2.4 -3.9 Uncharacterized conserved protein compare
Psest_1115 -2.4 -2.9 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3479 -2.3 -4.8 molybdenum cofactor synthesis domain compare
Psest_3480 -2.3 -4.1 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3484 -2.3 -6.9 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_2333 -2.2 -1.3 Protein of unknown function (DUF3359). compare
Psest_0827 -2.2 -14.7 Nitric oxide reductase large subunit compare
Psest_2023 -2.2 -4.2 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3485 -2.1 -13.4 nitrate reductase, beta subunit compare
Psest_0152 -2.1 -7.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_3649 -2.1 -7.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0953 -2.0 -7.0 iron-sulfur cluster-binding protein compare
Psest_0958 -2.0 -6.2 Oligoketide cyclase/lipid transport protein compare
Psest_2329 -2.0 -12.2 Transcriptional regulator compare
Psest_0144 -2.0 -6.4 Fe-S cluster protector protein compare
Psest_0393 -2.0 -4.7 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0954 -1.9 -6.8 Fe-S oxidoreductase compare
Psest_1814 -1.8 -12.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3843 -1.8 -10.1 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2579 -1.8 -1.7 amidophosphoribosyltransferase compare
Psest_1295 -1.8 -4.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3486 -1.8 -13.3 respiratory nitrate reductase, alpha subunit compare
Psest_2104 -1.8 -1.2 IscR-regulated protein YhgI compare
Psest_1655 -1.7 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2293 -1.7 -1.8 hypothetical protein compare
Psest_1505 -1.7 -2.4 Organic radical activating enzymes compare
Psest_0835 -1.7 -11.0 Collagenase and related proteases compare
Psest_3490 -1.7 -3.4 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_0297 -1.7 -4.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1870 -1.6 -1.6 Transcriptional regulators compare
Psest_1082 -1.6 -2.7 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0837 -1.6 -2.9 Putative lipid carrier protein compare
Psest_0844 -1.6 -4.7 High-affinity Fe2+/Pb2+ permease compare
Psest_0558 -1.6 -1.1 urease, beta subunit compare
Psest_2088 -1.5 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1511 -1.5 -4.5 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0919 -1.5 -3.5 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0161 -1.5 -2.2 Membrane-bound metallopeptidase compare
Psest_3488 -1.4 -3.3 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3301 -1.4 -2.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_1012 -1.4 -2.9 Signal transduction histidine kinase compare
Psest_0687 -1.4 -6.7 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3000 -1.4 -5.8 molybdate ABC transporter, permease protein compare
Psest_1660 -1.3 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3489 -1.3 -7.1 hypothetical protein compare
Psest_1974 -1.3 -2.5 integration host factor, alpha subunit compare
Psest_0959 -1.3 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_0836 -1.3 -4.8 Collagenase and related proteases compare
Psest_3092 -1.3 -1.6 ribonuclease III, bacterial compare
Psest_1656 -1.3 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1659 -1.3 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2538 -1.3 -2.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_4103 -1.3 -1.5 AraC-type DNA-binding domain-containing proteins compare
Psest_3115 -1.3 -5.2 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1724 -1.2 -3.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0062 -1.2 -2.4 tryptophan synthase, alpha subunit compare
Psest_1087 -1.2 -1.2 uncharacterized peroxidase-related enzyme compare
Psest_0466 -1.2 -2.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_4078 -1.2 -1.6 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0622 -1.2 -5.0 Disulfide bond formation protein DsbB compare
Psest_1837 -1.2 -3.6 Endoglucanase compare
Psest_1516 -1.2 -1.7 Uncharacterized lipoprotein compare
Psest_2490 -1.2 -6.6 succinyl-CoA synthetase, alpha subunit compare
Psest_1782 -1.2 -1.9 Predicted transcriptional regulators compare
Psest_1679 -1.2 -1.4 ribonuclease, Rne/Rng family compare
Psest_3145 -1.2 -1.5 hypothetical protein compare
Psest_1663 -1.1 -3.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3113 -1.1 -2.1 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3117 -1.1 -2.8 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1813 -1.1 -5.5 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1522 -1.1 -2.7 hypothetical protein compare
Psest_0313 -1.1 -3.2 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3298 -1.0 -6.1 histidinol dehydrogenase compare
Psest_2848 -1.0 -1.4 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1920 -1.0 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_3112 -1.0 -3.1 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0813 -1.0 -2.7 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_0153 -1.0 -5.7 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2999 -1.0 -3.0 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_0830 -1.0 -5.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1884 -1.0 -2.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0855 -1.0 -3.5 NAD-dependent aldehyde dehydrogenases compare
Psest_1986 -1.0 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_0133 -1.0 -1.1 type VI secretion protein, VC_A0107 family compare
Psest_2771 -1.0 -1.7 Predicted membrane protein compare
Psest_3937 -1.0 -1.5 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0218 -1.0 -2.4 Acyl-CoA hydrolase compare
Psest_3323 -1.0 -3.8 ribonuclease, Rne/Rng family compare
Psest_0442 -1.0 -2.2 ATPases of the AAA+ class compare
Psest_0426 -1.0 -3.3 Transposase and inactivated derivatives compare
Psest_0796 -1.0 -2.5 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_3299 -1.0 -5.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2786 -1.0 -1.0 Domain of unknown function (DUF3597). compare
Psest_3943 -0.9 -2.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2810 -0.9 -2.7 5'/3'-nucleotidase SurE compare
Psest_1366 -0.9 -1.2 hypothetical protein compare
Psest_2123 -0.9 -1.9 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_1230 -0.9 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_4209 -0.9 -1.7 Uncharacterized conserved small protein compare
Psest_3767 -0.9 -2.4 tyrosine recombinase XerC compare
Psest_2083 -0.9 -3.5 Putative sterol carrier protein compare
Psest_1417 -0.9 -1.5 hypothetical protein compare
Psest_3129 -0.9 -0.7 tyrosine recombinase XerD compare
Psest_2324 -0.9 -5.5 hypothetical protein compare
Psest_4345 -0.9 -3.6 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3762 -0.9 -3.1 iron donor protein CyaY compare
Psest_2744 -0.9 -1.4 Uncharacterized conserved protein compare
Psest_0632 -0.9 -2.3 hypothetical protein compare
Psest_1001 -0.9 -2.5 hypothetical protein compare
Psest_2323 -0.9 -5.5 Uncharacterized protein conserved in archaea compare
Psest_3718 -0.9 -3.1 Tfp pilus assembly protein PilN compare
Psest_0155 -0.9 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3047 -0.9 -0.7 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0170 -0.9 -2.9 5,10-methenyltetrahydrofolate synthetase compare
Psest_2566 -0.9 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_0015 -0.9 -1.5 Tetratricopeptide repeat. compare
Psest_3413 -0.9 -1.7 hypothetical protein compare
Psest_0182 -0.8 -2.7 glycine cleavage system H protein compare
Psest_1249 -0.8 -2.6 serine O-acetyltransferase compare
Psest_0993 -0.8 -4.7 Glucose-6-phosphate isomerase compare
Psest_0845 -0.8 -0.5 hypothetical protein compare
Psest_3174 -0.8 -5.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2605 -0.8 -1.8 transcriptional activator RfaH compare
Psest_1562 -0.8 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_3864 -0.8 -5.4 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3913 -0.8 -1.6 hypothetical protein compare
Psest_1111 -0.8 -1.7 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2752 -0.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0300 -0.8 -5.2 Methyl-accepting chemotaxis protein compare
Psest_3862 -0.8 -5.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0031 -0.8 -0.8 Uncharacterized conserved protein compare
Psest_4003 -0.8 -2.2 TIGR00153 family protein compare
Psest_1162 -0.8 -1.3 Spermidine synthase compare
Psest_1463 -0.8 -0.6 SufE protein probably involved in Fe-S center assembly compare
Psest_2613 -0.8 -0.9 hypothetical protein compare
Psest_2407 -0.8 -2.2 nitrite reductase [NAD(P)H], small subunit compare
Psest_0833 -0.8 -2.6 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
Psest_0951 -0.8 -4.0 FAD/FMN-containing dehydrogenases compare
Psest_1354 -0.8 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0440 -0.8 -1.2 hypothetical protein compare
Psest_0822 -0.8 -2.2 Transcriptional regulators compare
Psest_2590 -0.8 -0.8 3-isopropylmalate dehydratase, small subunit compare
Psest_1204 -0.8 -1.6 Transcriptional regulators compare
Psest_2163 -0.8 -3.9 Transcriptional regulator compare
Psest_3736 -0.8 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_3288 -0.8 -5.4 type IV-A pilus assembly ATPase PilB compare
Psest_2798 -0.7 -2.0 Truncated hemoglobins compare
Psest_3487 -0.7 -4.1 Nitrate/nitrite transporter compare
Psest_2648 -0.7 -1.7 hypothetical protein compare
Psest_0955 -0.7 -2.5 D,L-lactate:H+ symporter (from data) compare
Psest_0041 -0.7 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_1622 -0.7 -2.9 hypothetical protein compare
Psest_1498 -0.7 -0.8 tol-pal system-associated acyl-CoA thioesterase compare
Psest_2268 -0.7 -3.0 Alcohol dehydrogenase, class IV compare
Psest_0817 -0.7 -3.9 Ethylbenzene dehydrogenase. compare
Psest_3383 -0.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0831 -0.7 -0.8 hypothetical protein compare
Psest_3853 -0.7 -1.0 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_4043 -0.7 -2.1 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0820 -0.7 -2.9 hypothetical protein compare
Psest_2491 -0.7 -2.5 succinyl-CoA synthetase, beta subunit compare
Psest_0575 -0.7 -0.5 HrpA-like helicases compare
Psest_0794 -0.7 -5.5 parallel beta-helix repeat (two copies) compare
Psest_1397 -0.7 -1.7 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_3921 -0.7 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2718 -0.7 -0.7 hypothetical protein compare
Psest_3944 -0.7 -1.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_4346 -0.7 -2.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2716 -0.7 -1.1 ABC-type multidrug transport system, ATPase component compare
Psest_2110 -0.7 -1.3 hypothetical protein compare
Psest_2285 -0.7 -1.8 ATP-dependent protease La compare
Psest_4056 -0.7 -1.5 FMN reductase, SsuE family compare
Psest_2266 -0.7 -1.4 hypothetical protein compare
Psest_2557 -0.7 -0.9 Protein of unknown function (DUF2474). compare
Psest_1480 -0.7 -1.7 arsenate reductase (glutaredoxin) compare
Psest_3063 -0.7 -2.7 hypothetical protein compare
Psest_3752 -0.7 -1.9 hypothetical protein compare
Psest_3297 -0.7 -3.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3988 -0.7 -3.0 phosphoenolpyruvate carboxykinase (ATP) compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments