Experiment set16IT042 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Anaerobic, acetate donor; nitrate and iron

200 most important genes:

  gene name fitness t score description  
AO353_25925 -4.4 -2.0 hypothetical protein compare
AO353_22955 -4.1 -2.9 tRNA hydroxylase compare
AO353_26070 -4.1 -2.8 hypothetical protein compare
AO353_12650 -3.9 -1.1 hypothetical protein compare
AO353_00185 -3.7 -2.0 phage tail protein compare
AO353_06795 -3.7 -1.7 Isochorismatase compare
AO353_07445 -3.7 -1.7 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_24260 -3.6 -1.7 hypothetical protein compare
AO353_23785 -3.4 -1.5 hypothetical protein compare
AO353_02330 -3.4 -2.4 allantoicase compare
AO353_24535 -3.4 -1.8 hypothetical protein compare
AO353_19750 -3.4 -1.8 diaminopimelate epimerase compare
AO353_27950 -3.1 -1.2 hypothetical protein compare
AO353_06100 -3.1 -1.6 thymidylate synthase compare
AO353_27090 -3.1 -1.4 hypothetical protein compare
AO353_01220 -3.0 -1.9 hypothetical protein compare
AO353_11920 -3.0 -2.8 hypothetical protein compare
AO353_01915 -3.0 -1.4 GlcG protein compare
AO353_01190 -3.0 -1.6 hypothetical protein compare
AO353_07610 -3.0 -1.1 hypothetical protein compare
AO353_26050 -3.0 -1.9 hypothetical protein compare
AO353_04055 -3.0 -1.3 methionine--tRNA ligase compare
AO353_12790 -2.9 -1.7 hypothetical protein compare
AO353_24275 -2.8 -1.6 transcriptional regulator compare
AO353_21655 -2.8 -3.3 cobalamin biosynthesis protein CobW compare
AO353_18715 -2.8 -1.3 histidine kinase compare
AO353_21935 -2.7 -1.6 nitrite reductase compare
AO353_16530 -2.7 -1.2 ribonuclease HII compare
AO353_25870 -2.7 -3.3 peptide ABC transporter ATP-binding protein compare
AO353_15640 -2.7 -2.6 acetylornithine aminotransferase compare
AO353_01725 -2.6 -1.8 phosphohistidine phosphatase compare
AO353_26280 -2.6 -2.9 peptidase M48, Ste24p compare
AO353_03150 -2.6 -3.6 peptidase M4 compare
AO353_23140 -2.5 -2.9 aspartate dehydrogenase compare
AO353_13130 -2.5 -3.0 N-acetylmuramoyl-L-alanine amidase compare
AO353_01135 -2.5 -2.2 enoyl-CoA hydratase compare
AO353_09875 -2.5 -1.6 hypothetical protein compare
AO353_17820 -2.5 -3.4 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO353_05535 -2.5 -1.6 tRNA-Thr compare
AO353_02835 -2.5 -4.4 chemotaxis protein CheY compare
AO353_20425 -2.4 -2.1 ArsC family transcriptional regulator compare
AO353_09030 -2.4 -0.8 iron donor protein CyaY compare
AO353_16765 -2.4 -2.6 hypothetical protein compare
AO353_02280 -2.4 -1.3 DNA mismatch repair protein MutS compare
AO353_00460 -2.4 -2.3 TetR family transcriptional regulator compare
AO353_02040 -2.3 -1.6 integration host factor subunit beta compare
AO353_14970 -2.3 -3.3 hypothetical protein compare
AO353_03100 -2.3 -1.9 XRE family transcriptional regulator compare
AO353_22305 -2.3 -2.1 LysR family transcriptional regulator compare
AO353_15490 -2.3 -1.7 hypothetical protein compare
AO353_19290 -2.2 -2.3 molybdenum cofactor sulfurase compare
AO353_19500 -2.2 -2.8 peptidase S8 and S53 subtilisin kexin sedolisin compare
AO353_06275 -2.2 -2.4 DNA polymerase III subunit epsilon compare
AO353_11470 -2.2 -2.9 hypothetical protein compare
AO353_14010 -2.2 -4.5 GntR family transcriptional regulator compare
AO353_20535 -2.1 -2.7 hypothetical protein compare
AO353_09560 -2.1 -1.1 type VI secretion protein compare
AO353_12710 -2.1 -1.0 thioredoxin compare
AO353_07555 -2.1 -1.5 glycine cleavage system protein R compare
AO353_18135 -2.1 -1.3 hypothetical protein compare
AO353_02130 -2.1 -3.7 disulfide bond formation protein DsbA compare
AO353_09575 -2.1 -5.4 hypothetical protein compare
AO353_19605 -2.1 -1.5 hypothetical protein compare
AO353_10320 -2.0 -1.3 hypothetical protein compare
AO353_17730 -2.0 -2.5 hypothetical protein compare
AO353_26220 -2.0 -2.3 hypothetical protein compare
AO353_08060 -2.0 -2.7 hypothetical protein compare
AO353_02520 -2.0 -1.5 sodium transporter compare
AO353_09785 -2.0 -2.7 hypothetical protein compare
AO353_05885 -1.9 -3.4 glyoxalase compare
AO353_20660 -1.9 -2.2 pseudouridine synthase compare
AO353_22645 -1.8 -1.6 hypothetical protein compare
AO353_25340 -1.8 -3.2 triphosphoribosyl-dephospho-CoA synthase MdcB compare
AO353_15260 -1.8 -4.4 stringent starvation protein A compare
AO353_19205 -1.8 -1.9 hypothetical protein compare
AO353_01685 -1.8 -0.9 hypothetical protein compare
AO353_15210 -1.8 -3.0 Zn-dependent hydrolase compare
AO353_11610 -1.8 -2.1 glutamine ABC transporter ATP-binding protein compare
AO353_17875 -1.8 -4.7 hypothetical protein compare
AO353_25955 -1.8 -2.1 NIPSNAP family containing protein compare
AO353_24625 -1.8 -2.2 hypothetical protein compare
AO353_02695 -1.7 -4.8 hypothetical protein compare
AO353_21895 -1.7 -2.4 molybdenum cofactor biosynthesis protein MoaD compare
AO353_12590 -1.7 -3.1 hypothetical protein compare
AO353_09525 -1.7 -4.6 ABC transporter ATP-binding protein compare
AO353_15730 -1.7 -1.4 hypothetical protein compare
AO353_16350 -1.7 -2.7 SAM-dependent methyltransferase compare
AO353_19310 -1.7 -1.3 enoyl-CoA hydratase compare
AO353_26225 -1.7 -3.3 hypothetical protein compare
AO353_06160 -1.7 -2.8 transcriptional regulator compare
AO353_26935 -1.6 -1.8 LysR family transcriptional regulator compare
AO353_03370 -1.6 -2.7 aldose epimerase compare
AO353_08525 -1.6 -3.3 purine nucleoside phosphorylase compare
AO353_21750 -1.6 -2.0 peptidylprolyl isomerase compare
AO353_17200 -1.6 -3.7 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (from data) compare
AO353_02250 -1.6 -1.1 chorismate synthase compare
AO353_08615 -1.6 -4.6 hypothetical protein compare
AO353_12880 -1.6 -1.4 ADP-heptose--LPS heptosyltransferase compare
AO353_04240 -1.6 -1.3 chemotaxis protein CheW compare
AO353_12570 -1.5 -2.3 type II secretion system protein GspI compare
AO353_08605 -1.5 -4.0 type I pantothenate kinase compare
AO353_03410 -1.5 -1.6 chemotaxis protein CheY compare
AO353_15115 -1.5 -4.2 amidase compare
AO353_26410 -1.5 -3.2 hypothetical protein compare
AO353_16955 -1.5 -4.2 succinylglutamate desuccinylase compare
AO353_28350 -1.5 -4.6 hypothetical protein compare
AO353_20595 -1.5 -2.8 4-hydroxybenzoyl-CoA thioesterase compare
AO353_20505 -1.5 -3.5 cytidyltransferase compare
AO353_07685 -1.5 -2.6 hypothetical protein compare
AO353_21320 -1.5 -1.4 glutathione S-transferase compare
AO353_01435 -1.5 -3.2 protein tyrosine phosphatase compare
AO353_16795 -1.5 -2.6 lysozyme compare
AO353_26520 -1.5 -2.3 TetR family transcriptional regulator compare
AO353_25310 -1.5 -2.2 malonate carrier protein compare
AO353_14340 -1.4 -2.3 phospholipid-binding protein compare
AO353_16780 -1.4 -3.7 phage tail protein compare
AO353_25405 -1.4 -2.4 molybdenum cofactor biosynthesis protein B compare
AO353_17100 -1.4 -1.6 hypothetical protein compare
AO353_18120 -1.4 -1.8 hypothetical protein compare
AO353_18600 -1.4 -2.8 flagellar basal-body rod protein FlgG compare
AO353_14000 -1.4 -2.9 GTP-binding protein compare
AO353_27575 -1.4 -1.8 hypothetical protein compare
AO353_25315 -1.4 -2.8 malonate decarboxylase subunit epsilon compare
AO353_08910 -1.4 -1.3 hypothetical protein compare
AO353_28060 -1.3 -3.1 hypothetical protein compare
AO353_24190 -1.3 -1.8 hypothetical protein compare
AO353_17640 -1.3 -1.5 serine peptidase compare
AO353_20815 -1.3 -1.4 LacI family transcriptional regulator compare
AO353_19775 -1.3 -2.8 transcriptional regulator compare
AO353_25000 -1.3 -2.3 magnesium transporter compare
AO353_04890 -1.3 -2.9 biopolymer transporter ExbB compare
AO353_11850 -1.3 -2.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_24805 -1.3 -3.0 TetR family transcriptional regulator compare
AO353_20225 -1.3 -2.8 1-aminocyclopropane-1-carboxylate deaminase compare
AO353_00600 -1.3 -3.5 cytochrome C oxidase Cbb3 compare
AO353_08630 -1.3 -1.9 hypothetical protein compare
AO353_07920 -1.3 -3.1 hypothetical protein compare
AO353_00025 -1.3 -2.8 phenazine biosynthesis protein PhzF compare
AO353_09570 -1.3 -4.9 type VI secretion protein ImpA compare
AO353_28165 -1.3 -2.1 ABC transporter substrate-binding protein compare
AO353_21425 -1.3 -2.3 hypothetical protein compare
AO353_12245 -1.3 -1.3 hypothetical protein compare
AO353_08620 -1.3 -1.1 hypothetical protein compare
AO353_15000 -1.3 -2.0 glycerate dehydrogenase compare
AO353_22515 -1.3 -3.3 poly-gamma-glutamate biosynthesis protein compare
AO353_22250 -1.3 -2.7 NADPH-dependent FMN reductase compare
AO353_28850 -1.3 -4.0 LysR family transcriptional regulator compare
AO353_13225 -1.3 -0.9 50S ribosomal protein L9 compare
AO353_24095 -1.2 -2.1 multidrug DMT transporter permease compare
AO353_06745 -1.2 -1.8 zinc-binding protein compare
AO353_22195 -1.2 -1.0 metal ABC transporter permease compare
AO353_22025 -1.2 -1.3 iron-sulfur cluster repair di-iron protein compare
AO353_08215 -1.2 -2.5 thiazole synthase compare
AO353_24815 -1.2 -2.2 amino acid ABC transporter substrate-binding protein compare
AO353_25335 -1.2 -1.1 malonate decarboxylase acyl carrier protein compare
AO353_23325 -1.2 -3.1 hypothetical protein compare
AO353_10145 -1.2 -3.2 carbonate dehydratase compare
AO353_19000 -1.2 -1.3 ABC transporter compare
AO353_20840 -1.2 -1.3 ribose pyranase compare
AO353_10780 -1.2 -0.9 DNA-binding protein compare
AO353_20100 -1.2 -2.3 hypothetical protein compare
AO353_11785 -1.2 -2.9 hypothetical protein compare
AO353_26240 -1.2 -1.4 hypothetical protein compare
AO353_24835 -1.2 -3.3 acyl-CoA dehydrogenase compare
AO353_28535 -1.2 -3.1 AraC family transcriptional regulator compare
AO353_05620 -1.2 -2.6 MFS transporter compare
AO353_07735 -1.2 -2.8 AraC family transcriptional regulator compare
AO353_28700 -1.2 -1.6 hypothetical protein compare
AO353_00930 -1.2 -2.6 phosphoserine phosphatase compare
AO353_07415 -1.2 -3.3 AsnC family transcriptional regulator compare
AO353_17900 -1.2 -2.9 RND transporter MFP subunit compare
AO353_22330 -1.2 -2.4 AraC family transcriptional regulator compare
AO353_20590 -1.2 -1.0 hydrolase compare
AO353_28440 -1.2 -2.9 alpha/beta hydrolase compare
AO353_26570 -1.2 -2.4 Dihydropyrimidinase (EC 3.5.2.2) (from data) compare
AO353_00065 -1.2 -1.5 oxidoreductase compare
AO353_23280 -1.2 -1.8 hypothetical protein compare
AO353_26810 -1.2 -2.3 (2Fe-2S)-binding protein compare
AO353_08130 -1.2 -0.8 uracil phosphoribosyltransferase compare
AO353_14935 -1.2 -1.8 aminopeptidase compare
AO353_19490 -1.2 -2.3 Fis family transcriptional regulator compare
AO353_21770 -1.1 -1.3 3-hydroxybutyrate dehydrogenase compare
AO353_19390 -1.1 -2.5 glyoxalase compare
AO353_23495 -1.1 -0.7 SAM-dependent methyltransferase compare
AO353_06830 -1.1 -3.2 hypothetical protein compare
AO353_22180 -1.1 -2.5 2-oxobutyrate oxidase compare
AO353_11795 -1.1 -3.3 hypothetical protein compare
AO353_09660 -1.1 -0.9 hypothetical protein compare
AO353_23835 -1.1 -1.5 hypothetical protein compare
AO353_21255 -1.1 -1.8 ABC transporter ATP-binding protein compare
AO353_05730 -1.1 -2.5 hypothetical protein compare
AO353_08555 -1.1 -2.4 hypothetical protein compare
AO353_17380 -1.1 -1.9 hypothetical protein compare
AO353_09495 -1.1 -2.5 hypothetical protein compare
AO353_25075 -1.1 -4.1 citrate-proton symporter compare
AO353_11475 -1.1 -2.6 hypothetical protein compare
AO353_27895 -1.1 -3.2 isochorismatase compare
AO353_13205 -1.1 -3.0 23S rRNA methyltransferase compare
AO353_01705 -1.1 -1.4 alpha/beta hydrolase compare
AO353_27875 -1.1 -2.8 exonuclease III compare


Specific Phenotypes

For 4 genes in this experiment

For anaerobic Potassium acetate in Pseudomonas fluorescens FW300-N2E3

For anaerobic Potassium acetate across organisms