Experiment set16IT037 for Sinorhizobium meliloti 1021

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

200 most important genes:

  gene name fitness t score description  
SMc00882 -6.3 -3.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
SMa1002 -5.3 -2.0 hypothetical protein compare
SMc02850 -5.0 -2.9 DNA polymerase I compare
SMc02719 -5.0 -1.1 transposase compare
SMc02232 -4.4 -2.8 hypothetical protein compare
SMc02753 -4.2 -0.9 PTS system transporter subunit IIA compare
SMc00427 -4.2 -2.0 peptide chain release factor RF-3 protein compare
SMc03242 -4.1 -2.0 GTP-binding protein compare
SMa1095 -4.0 -0.9 hypothetical protein compare
SMc00511 -4.0 -3.1 D-ribulose-5-phosphate 3-epimerase compare
SM_b20948 -4.0 -1.2 glucosyltransferase compare
SMc00492 -4.0 -0.8 hypothetical protein compare
SMc00088 -3.9 -1.2 hypothetical protein compare
SMc02144 -3.8 -2.1 phosphate ABC transporter permease compare
SMc04385 -3.8 -4.4 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc01337 -3.7 -1.1 hypothetical protein compare
SM_b20752 -3.7 -4.8 3-hydroxyisobutyryl-CoA hydrolase compare
SMc04085 -3.6 -3.5 hypothetical protein compare
SMc03229 -3.6 -1.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMa1365 -3.6 -1.3 ATP-binding protein compare
SMc02495 -3.5 -1.1 translaldolase compare
SMc01845 -3.3 -1.2 transglycosylase transmembrane protein compare
SMc02115 -3.3 -0.7 hypothetical protein compare
SMc03053 -3.2 -1.4 flagellar biosynthesis protein FliQ compare
SMc02142 -3.2 -4.3 phosphate transporter ATP-binding protein compare
SMc02234 -3.2 -1.5 hypothetical protein compare
SM_b22023 -3.1 -1.9 molecular chaperone GroES compare
SMc00982 -3.1 -5.1 dioxygenase compare
SM_b21176 -3.0 -3.0 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc00856 -3.0 -0.9 hypothetical protein compare
SMc03763 -3.0 -1.9 cytosine-specific methyltransferase compare
SMa0211 -2.9 -0.8 hypothetical protein compare
SMc02906 -2.9 -1.1 hypothetical protein compare
SMc01447 -2.8 -0.9 hypothetical protein compare
SMc00302 -2.8 -2.2 hypothetical protein compare
SMc02897 -2.8 -1.6 cytochrome C transmembrane protein compare
SMc01144 -2.8 -3.5 ribonuclease PH compare
SMc03967 -2.7 -1.0 Holliday junction resolvase compare
SMc02979 -2.6 -4.9 hypothetical protein compare
SMc02755 -2.6 -7.4 S-adenosyl-L-homocysteine hydrolase compare
SMc00815 -2.6 -0.9 inosine 5'-monophosphate dehydrogenase compare
SMc00010 -2.6 -1.2 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc02147 -2.6 -3.2 phosphate regulon sensor histidine kinase transmembrane protein compare
SMa1894 -2.6 -2.1 methionine sulfoxide reductase B compare
SMc01569 -2.6 -0.8 carbamoyl phosphate synthase small subunit compare
SMc02858 -2.6 -0.5 chaperone protein DnaJ compare
SMc00555 -2.5 -0.9 colicin V production transmembrane protein compare
SMc00566 -2.5 -3.0 hypothetical protein compare
SMc02867 -2.4 -1.7 multidrug-efflux system transmembrane protein compare
SMc01472 -2.4 -1.2 50S ribosomal protein L11 methyltransferase compare
SM_b20397 -2.4 -2.4 oxidoreductase compare
SMc00461 -2.4 -1.5 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMc01880 -2.4 -1.5 pantoate--beta-alanine ligase compare
SM_b21679 -2.4 -1.1 hypothetical protein compare
SMc00009 -2.4 -6.0 cytochrome C oxidase subunit II protein compare
SMc01242 -2.3 -1.5 signal peptide protein compare
SMc01471 -2.3 -2.0 cytochrome C oxidase assembly factor transmembrane protein compare
SMc00085 -2.3 -3.8 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMc01206 -2.3 -1.1 queuine tRNA-ribosyltransferase compare
SMc02713 -2.3 -1.7 RNA polymerase sigma-E factor (sigma-24) protein compare
SM_b20540 -2.3 -1.0 hypothetical protein compare
SMc02362 -2.2 -1.4 cytochrome c-type biogenesis protein CcmE compare
SMc01852 -2.2 -6.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMa0874 -2.2 -2.7 NodN dehydratase compare
SM_b20433 -2.1 -2.2 ectoine utilization protein EutC compare
SMa0126 -2.1 -1.2 CspA8 Cold shock family protein compare
SMc01183 -2.1 -0.6 LexA repressor compare
SMc02520 -2.0 -5.4 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) (from data) compare
SMc00963 -2.0 -1.6 hypothetical protein compare
SMa0789 -2.0 -1.9 GntR family transcriptional regulator compare
SM_b21633 -2.0 -1.0 enoyl-CoA hydratase compare
SMc01850 -2.0 -1.9 hypothetical protein compare
SMa2168 -1.9 -1.2 tRNA-Met compare
SMc02145 -1.9 -0.6 signal peptide protein compare
SMc02435 -1.9 -1.7 methyltransferase compare
SMc03069 -1.9 -1.8 6-phosphogluconolactonase compare
SMc00605 -1.9 -1.8 hypothetical protein compare
SMc00189 -1.9 -2.9 cytochrome C1 protein compare
SMc03100 -1.9 -1.4 hypothetical protein compare
SMc02451 -1.9 -1.3 hypothetical protein compare
SMc01315 -1.9 -1.0 hypothetical protein compare
SMc01858 -1.9 -1.0 S-adenosyl-methyltransferase MraW compare
SMc03978 -1.9 -2.5 transketolase compare
SMc03996 -1.9 -2.7 thiamine-phosphate pyrophosphorylase compare
SMc02261 -1.8 -2.2 transcriptional regulator compare
SMc01488 -1.8 -4.3 hypothetical protein compare
SMc00981 -1.8 -2.8 ferredoxin protein compare
SMc01361 -1.8 -1.1 dihydroorotase compare
SMc00579 -1.8 -3.5 dimethyladenosine transferase compare
SMc02354 -1.8 -3.2 hypothetical protein compare
SMa2034 -1.8 -1.1 hypothetical protein compare
SMc02861 -1.7 -1.8 phosphate transporter compare
SMc00602 -1.7 -4.1 excinuclease ABC subunit C compare
SM_b21551 -1.7 -0.8 hypothetical protein compare
SMc01119 -1.7 -1.6 hypothetical protein compare
SMc02716 -1.7 -2.1 hypothetical protein compare
SMc02909 -1.7 -0.9 transglycosylase transmembrane protein compare
SMc00928 -1.7 -0.8 signal peptide protein compare
SMc04052 -1.7 -1.2 transcriptional regulator compare
SMc00353 -1.7 -1.6 transmembrane protein compare
SMa0643 -1.7 -1.2 transposase compare
SMc01635 -1.7 -2.9 oxidoreductase compare
SMc04383 -1.7 -2.4 putative hydrolase, required for lysine catabolism (from data) compare
SMc01026 -1.7 -1.2 hypothetical protein compare
SMc02901 -1.7 -0.7 hypothetical protein compare
SM_b20146 -1.6 -4.2 pyridoxal phosphate biosynthetic protein compare
SMc00619 -1.6 -0.9 hypothetical protein compare
SMc03899 -1.6 -0.7 hypothetical protein compare
SMc02050 -1.6 -2.6 trigger factor compare
SM_b21226 -1.6 -3.3 hypothetical protein compare
SM_b20862 -1.6 -2.1 hypothetical protein compare
SMa1176 -1.6 -2.0 hypothetical protein compare
SMc02407 -1.6 -5.0 hypothetical protein compare
SM_b22001 -1.6 -0.8 hypothetical protein compare
SMc00298 -1.5 -2.8 methionine aminopeptidase compare
SMc03184 -1.5 -0.9 PH adaptation potassium efflux system G transmembrane protein compare
SMc02246 -1.5 -0.3 hypothetical protein compare
SMc00281 -1.5 -2.0 signal peptide protein compare
SMc03878 -1.5 -1.4 acetoacetyl-CoA reductase compare
SM_b20021 -1.5 -0.8 transcriptional regulator compare
SM_b20357 -1.5 -2.2 histidine kinase compare
SMc00337 -1.5 -1.2 hypothetical protein compare
SM_b21524 -1.5 -1.5 septum formation inhibitor compare
SMc02866 -1.5 -1.6 transcriptional regulator compare
SM_b20909 -1.5 -1.6 hypothetical protein compare
SMa0734 -1.5 -0.7 hypothetical protein compare
SMc00041 -1.5 -1.5 hypothetical protein compare
SMc02385 -1.4 -2.0 hypothetical protein compare
SMc02114 -1.4 -1.9 hypothetical protein compare
SMa1398 -1.4 -1.4 3-ketoacyl-ACP reductase compare
SMc02714 -1.4 -0.9 hypothetical protein compare
SMc00169 -1.4 -7.8 malic enzyme compare
SM_b20474 -1.4 -1.7 hypothetical protein compare
SM_b21509 -1.4 -1.5 plasmid stability protein compare
SMc00019 -1.4 -2.0 hypothetical protein compare
SMc00188 -1.4 -5.1 cytochrome B transmembrane protein compare
SM_b20955 -1.4 -2.0 endo-beta-1,3-1,4-glycanase compare
SMc02778 -1.4 -0.8 hydroxyacid aldolase compare
SMa0132 -1.4 -1.9 hypothetical protein compare
SMc02069 -1.4 -3.2 hypothetical protein compare
SMc03862 -1.4 -2.4 hypothetical protein compare
SM_b21132 -1.4 -2.1 sulfate ABC transporter permease compare
SMa1765 -1.4 -0.9 hypothetical protein compare
SMc01881 -1.4 -1.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02077 -1.4 -1.8 exodeoxyribonuclease III protein compare
SMa1686 -1.4 -3.0 Two-component response regulator compare
SMa1635 -1.4 -1.2 hypothetical protein compare
SM_b21177 -1.4 -3.7 phosphate uptake ABC transporter ATP-binding protein compare
SMc04174 -1.4 -1.0 signal peptide protein compare
SMc03930 -1.4 -0.9 sarcosine oxidase subunit gamma compare
SM_b20811 -1.4 -0.8 hypothetical protein compare
SMc02245 -1.3 -2.0 dihydroorotate dehydrogenase 2 compare
SMc02846 -1.3 -2.4 sugar kinase compare
SM_b21175 -1.3 -2.1 phosphate uptake ABC transporter permease compare
SMa1595 -1.3 -1.7 hypothetical protein compare
SMc04882 -1.3 -1.6 transcriptional regulator compare
SMc02484 -1.3 -2.5 amino acid efflux transmembrane protein compare
SMa0887 -1.3 -2.1 hypothetical protein compare
SM_b21569 -1.3 -1.0 transcriptional regulator compare
SMc01147 -1.3 -1.3 coproporphyrinogen III oxidase compare
SMc03974 -1.3 -3.1 hypothetical protein compare
SMa1832 -1.3 -2.5 hypothetical protein compare
SMc00053 -1.3 -0.6 monovalent cation/H+ antiporter subunit C compare
SMc00970 -1.3 -1.5 exodeoxyribonuclease VII small subunit compare
SMc03863 -1.3 -1.1 50S ribosomal protein L19 compare
SMc02695 -1.3 -3.4 GTP-dependent nucleic acid-binding protein EngD compare
SMc03051 -1.3 -2.2 flagellar biosynthesis repressor FlbT compare
SMa1239 -1.2 -1.3 NapD component of periplasmic nitrate reductase compare
SMc02980 -1.2 -1.0 hypothetical protein compare
SMa0281 -1.2 -2.7 MerR family transcriptional regulator compare
SMc04391 -1.2 -0.9 3-ketoacyl-ACP reductase compare
SMa1572 -1.2 -3.1 hypothetical protein compare
SM_b20145 -1.2 -1.4 hypothetical protein compare
SMc00880 -1.2 -0.9 oxidoreductase compare
SM_b21347 -1.2 -0.9 pectin degradation protein compare
SMc00241 -1.2 -0.9 transcriptional regulator compare
SMc00024 -1.2 -2.0 chromosome partition protein compare
SMc02641 -1.2 -1.8 UDP-glucose 6-dehydrogenase compare
SMc04040 -1.2 -1.6 heat shock protein compare
SMc00412 -1.2 -1.6 orotidine 5'-phosphate decarboxylase compare
SMc01351 -1.2 -1.3 hypothetical protein compare
SMc00419 -1.2 -2.3 glutathione synthetase compare
SMa0990 -1.2 -2.0 hypothetical protein compare
SMc01799 -1.2 -1.2 signal peptide protein compare
SM_b20387 -1.2 -0.8 transcriptional regulator compare
SMc00191 -1.2 -1.0 hypothetical protein compare
SM_b22015 -1.2 -2.7 LysR family transcriptional regulator compare
SMc01724 -1.2 -1.7 hypothetical protein compare
SMa1547 -1.2 -2.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) compare
SMa0171 -1.2 -4.1 hypothetical protein compare
SMa0662 -1.2 -3.2 transcriptional regulator FixK compare
SMc00166 -1.2 -1.0 oxidoreductase NAD protein compare
SMa0905 -1.2 -0.7 hypothetical protein compare
SMa5020 -1.2 -2.5 hypothetical protein compare
SM_b20385 -1.2 -2.4 hypothetical protein compare
SMc03802 -1.1 -2.8 hypothetical protein compare
SM_b21174 -1.1 -1.9 phosphate uptake ABC transporter permease compare
SMc01614 -1.1 -1.7 triosephosphate isomerase compare
SMa0118 -1.1 -2.2 hypothetical protein compare
SM_b21674 -1.1 -1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in agar plate interaction experiments