Experiment set16IT033 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with Sodium chloride

200 most important genes:

  gene name fitness t score description  
PFLU_RS27690 -5.0 -2.3 response regulator compare
PFLU_RS04150 -4.9 -8.7 DUF1043 family protein compare
PFLU_RS23390 -4.9 -1.9 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS29095 -4.9 -18.4 polyphosphate kinase 1 compare
PFLU_RS27365 -4.7 -4.6 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS24590 -4.6 -3.2 cytochrome c assembly protein compare
PFLU_RS02490 -4.5 -9.1 phosphoserine phosphatase SerB compare
PFLU_RS23115 -4.4 -7.4 dicarboxylate/amino acid:cation symporter compare
PFLU_RS28645 -4.4 -11.7 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS22470 -4.3 -2.2 hypothetical protein compare
PFLU_RS28535 -4.3 -10.0 dihydroxy-acid dehydratase compare
PFLU_RS28385 -4.3 -9.6 homoserine O-acetyltransferase compare
PFLU_RS28390 -4.3 -8.2 methionine biosynthesis protein MetW compare
PFLU_RS04465 -4.3 -5.1 ATP phosphoribosyltransferase compare
PFLU_RS01895 -4.2 -4.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS20575 -4.2 -2.9 3-isopropylmalate dehydratase small subunit compare
PFLU_RS03970 -4.2 -6.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS27370 -4.1 -8.3 anthranilate phosphoribosyltransferase compare
PFLU_RS25640 -4.1 -7.9 ketol-acid reductoisomerase compare
PFLU_RS02590 -4.1 -4.0 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS27300 -4.1 -14.8 peptidoglycan DD-metalloendopeptidase family protein compare
PFLU_RS31840 -4.1 -1.3 hypothetical protein compare
PFLU_RS03555 -4.0 -0.9 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS29560 -4.0 -1.3 hypothetical protein compare
PFLU_RS20565 -3.9 -5.3 3-isopropylmalate dehydrogenase compare
PFLU_RS13900 -3.9 -2.1 hypothetical protein compare
PFLU_RS22030 -3.8 -3.3 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS01400 -3.8 -12.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS20510 -3.8 -6.8 O-succinylhomoserine sulfhydrylase compare
PFLU_RS24765 -3.8 -17.7 2-isopropylmalate synthase compare
PFLU_RS08410 -3.8 -4.5 HTH-type transcriptional regulator CysB compare
PFLU_RS19550 -3.7 -0.8 ABC transporter ATP-binding protein compare
PFLU_RS00180 -3.7 -2.6 tryptophan synthase subunit beta compare
PFLU_RS24025 -3.7 -8.9 quinolinate synthase NadA compare
PFLU_RS20730 -3.7 -1.7 hypothetical protein compare
PFLU_RS14050 -3.7 -1.5 hypothetical protein compare
PFLU_RS04470 -3.7 -5.0 histidinol dehydrogenase compare
PFLU_RS28165 -3.7 -6.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS25360 -3.6 -6.5 glutamate 5-kinase compare
PFLU_RS20580 -3.6 -7.3 3-isopropylmalate dehydratase large subunit compare
PFLU_RS07970 -3.6 -9.2 LOG family protein compare
PFLU_RS27910 -3.5 -1.1 helix-turn-helix transcriptional regulator compare
PFLU_RS26290 -3.5 -0.8 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS29780 -3.5 -6.6 acyl-CoA thioesterase compare
PFLU_RS02975 -3.5 -8.0 precorrin-3B synthase compare
PFLU_RS27640 -3.4 -1.3 alpha/beta fold hydrolase compare
PFLU_RS20540 -3.4 -4.7 phosphoribosylanthranilate isomerase compare
PFLU_RS20845 -3.4 -1.7 hypothetical protein compare
PFLU_RS25645 -3.4 -2.2 acetolactate synthase small subunit compare
PFLU_RS14810 -3.4 -1.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS05875 -3.3 -2.2 lysozyme compare
PFLU_RS07230 -3.3 -8.8 RNA polymerase sigma factor RpoE compare
PFLU_RS19555 -3.3 -1.3 histidine phosphatase family protein compare
PFLU_RS00175 -3.3 -2.3 tryptophan synthase subunit alpha compare
PFLU_RS06310 -3.3 -5.1 sigma E protease regulator RseP compare
PFLU_RS01605 -3.3 -4.5 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS24670 -3.2 -1.6 HigA family addiction module antidote protein compare
PFLU_RS15810 -3.2 -1.8 hypothetical protein compare
PFLU_RS28655 -3.2 -7.5 HAD family hydrolase compare
PFLU_RS02765 -3.2 -2.2 HupE/UreJ family protein compare
PFLU_RS01620 -3.2 -4.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS04345 -3.2 -7.1 ribosome-associated protein compare
PFLU_RS29760 -3.2 -10.0 phosphate ABC transporter permease PstA compare
PFLU_RS03535 -3.2 -3.4 YscO family type III secretion system apparatus protein compare
PFLU_RS18735 -3.1 -1.0 hypothetical protein compare
PFLU_RS21995 -3.1 -3.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS02050 -3.1 -14.9 NAD(P)-binding protein compare
PFLU_RS26530 -3.0 -14.4 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS01610 -3.0 -8.4 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS09500 -3.0 -1.0 hypothetical protein compare
PFLU_RS01995 -3.0 -3.5 malate dehydrogenase compare
PFLU_RS09845 -3.0 -2.0 biotin carboxyl carrier domain-containing protein compare
PFLU_RS03100 -2.9 -2.1 hypothetical protein compare
PFLU_RS12975 -2.9 -2.0 DUF934 domain-containing protein compare
PFLU_RS20290 -2.9 -1.1 integration host factor subunit alpha compare
PFLU_RS21260 -2.9 -6.4 DUF3509 domain-containing protein compare
PFLU_RS14550 -2.9 -2.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS07685 -2.9 -3.7 transcriptional repressor LexA compare
PFLU_RS29515 -2.9 -11.6 RidA family protein compare
PFLU_RS13370 -2.9 -0.9 DUF2790 domain-containing protein compare
PFLU_RS20960 -2.9 -2.3 hypothetical protein compare
PFLU_RS00065 -2.9 -3.4 lysophospholipid acyltransferase compare
PFLU_RS04635 -2.9 -4.7 BON domain-containing protein compare
PFLU_RS04220 -2.8 -6.5 FadR family transcriptional regulator compare
PFLU_RS01900 -2.8 -5.7 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS23355 -2.8 -22.4 acetate--CoA ligase compare
PFLU_RS07255 -2.8 -4.6 sulfurtransferase TusA family protein compare
PFLU_RS03665 -2.8 -5.6 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS12175 -2.7 -0.9 methyl-accepting chemotaxis protein compare
PFLU_RS02370 -2.7 -6.8 glycosyltransferase compare
PFLU_RS02365 -2.7 -7.0 glycosyltransferase compare
PFLU_RS07940 -2.7 -9.6 malate dehydrogenase (quinone) compare
PFLU_RS25715 -2.7 -1.9 RNA polymerase-binding protein DksA compare
PFLU_RS14045 -2.7 -1.9 hypothetical protein compare
PFLU_RS13475 -2.7 -9.0 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS31445 -2.7 -2.6 colicin immunity protein compare
PFLU_RS01595 -2.7 -10.6 AsmA family protein compare
PFLU_RS26565 -2.7 -1.3 rRNA maturation RNase YbeY compare
PFLU_RS04315 -2.7 -2.6 rod shape-determining protein MreD compare
PFLU_RS13045 -2.7 -3.2 AAA domain-containing protein compare
PFLU_RS13750 -2.7 -1.0 hypothetical protein compare
PFLU_RS10430 -2.6 -3.6 peptidase compare
PFLU_RS23070 -2.6 -0.9 50S ribosomal protein L32 compare
PFLU_RS13120 -2.6 -1.0 hypothetical protein compare
PFLU_RS16435 -2.6 -9.8 glycogen debranching protein GlgX compare
PFLU_RS14440 -2.6 -0.8 hypothetical protein compare
PFLU_RS26770 -2.6 -12.1 DedA family protein compare
PFLU_RS23380 -2.6 -1.6 HAD-IB family hydrolase compare
PFLU_RS00440 -2.5 -14.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS29290 -2.5 -3.4 hypothetical protein compare
PFLU_RS22010 -2.5 -6.3 threonine-phosphate decarboxylase compare
PFLU_RS26075 -2.5 -4.3 IS66 family insertion sequence hypothetical protein compare
PFLU_RS13050 -2.5 -5.1 VWA domain-containing protein compare
PFLU_RS04475 -2.5 -11.4 histidinol-phosphate transaminase compare
PFLU_RS18505 -2.5 -1.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS08505 -2.5 -7.5 protease HtpX compare
PFLU_RS26745 -2.5 -9.6 aldehyde dehydrogenase compare
PFLU_RS02625 -2.5 -3.8 ribonuclease R compare
PFLU_RS07645 -2.4 -1.7 hypothetical protein compare
PFLU_RS28420 -2.4 -6.9 thiazole synthase compare
PFLU_RS07650 -2.4 -11.1 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS01670 -2.4 -6.7 protein-export chaperone SecB compare
PFLU_RS31830 -2.4 -1.1 hypothetical protein compare
PFLU_RS02690 -2.4 -1.7 hypothetical protein compare
PFLU_RS00245 -2.4 -7.2 YheV family putative metal-binding protein compare
PFLU_RS02965 -2.4 -9.6 cobalt-precorrin-6A reductase compare
PFLU_RS22015 -2.4 -9.6 cobalamin biosynthesis protein compare
PFLU_RS02645 -2.4 -9.1 hypothetical protein compare
PFLU_RS21935 -2.4 -13.4 sensor histidine kinase compare
PFLU_RS13895 -2.4 -0.7 helix-turn-helix transcriptional regulator compare
PFLU_RS27650 -2.4 -5.0 biotin synthase BioB compare
PFLU_RS23065 -2.3 -8.5 phosphate acyltransferase PlsX compare
PFLU_RS25815 -2.3 -1.6 transcription termination/antitermination protein NusA compare
PFLU_RS12980 -2.3 -2.8 nitrite/sulfite reductase compare
PFLU_RS21425 -2.3 -2.2 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS17490 -2.3 -4.1 glutaminase B compare
PFLU_RS31825 -2.3 -3.3 hypothetical protein compare
PFLU_RS22025 -2.3 -12.0 cobyrinate a,c-diamide synthase compare
PFLU_RS22735 -2.3 -9.4 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS01585 -2.3 -5.7 oxidative damage protection protein compare
PFLU_RS07640 -2.3 -7.9 universal stress protein compare
PFLU_RS03610 -2.2 -2.2 redox-regulated ATPase YchF compare
PFLU_RS23890 -2.2 -3.6 pseudouridine synthase compare
PFLU_RS00415 -2.2 -1.5 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS17950 -2.2 -1.0 hypothetical protein compare
PFLU_RS29490 -2.2 -6.3 ribonuclease PH compare
PFLU_RS13825 -2.2 -1.0 hypothetical protein compare
PFLU_RS16425 -2.2 -9.9 malto-oligosyltrehalose synthase compare
PFLU_RS14430 -2.2 -1.3 arsenate reductase ArsC compare
PFLU_RS20870 -2.2 -1.8 hypothetical protein compare
PFLU_RS17265 -2.2 -1.4 hypothetical protein compare
PFLU_RS08165 -2.2 -1.2 acyl carrier protein compare
PFLU_RS26635 -2.2 -1.5 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS07910 -2.2 -1.4 type 1 fimbrial protein compare
PFLU_RS02985 -2.2 -10.5 precorrin-2 C(20)-methyltransferase compare
PFLU_RS21985 -2.2 -3.3 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS17920 -2.1 -1.8 acyltransferase compare
PFLU_RS24205 -2.1 -1.4 DNA binding protein compare
PFLU_RS25875 -2.1 -2.1 transcription elongation factor GreA compare
PFLU_RS21360 -2.1 -1.2 MarR family transcriptional regulator compare
PFLU_RS13610 -2.1 -2.3 ABC transporter ATP-binding protein compare
PFLU_RS25920 -2.1 -2.4 outer membrane protein assembly factor BamE compare
PFLU_RS11470 -2.1 -2.1 hypothetical protein compare
PFLU_RS02355 -2.1 -5.5 GNAT family N-acetyltransferase compare
PFLU_RS01625 -2.1 -1.3 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS29750 -2.1 -4.8 phosphate signaling complex protein PhoU compare
PFLU_RS27645 -2.1 -6.8 8-amino-7-oxononanoate synthase compare
PFLU_RS03770 -2.1 -10.1 sulfate adenylyltransferase subunit CysN compare
PFLU_RS19935 -2.1 -1.4 type II secretion system protein GspF compare
PFLU_RS28695 -2.1 -3.8 phosphoglycerate dehydrogenase compare
PFLU_RS30725 -2.1 -2.4 DUF1652 domain-containing protein compare
PFLU_RS05105 -2.0 -2.2 tetratricopeptide repeat protein compare
PFLU_RS18120 -2.0 -4.3 DeoR family transcriptional regulator compare
PFLU_RS13015 -2.0 -3.8 precorrin-4 C(11)-methyltransferase compare
PFLU_RS25750 -2.0 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS05630 -2.0 -0.9 amino acid ABC transporter ATP-binding protein compare
PFLU_RS24930 -2.0 -2.3 hypothetical protein compare
PFLU_RS26535 -2.0 -5.3 thiamine phosphate synthase compare
PFLU_RS27465 -2.0 -1.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS01095 -2.0 -2.7 ribbon-helix-helix protein, CopG family compare
PFLU_RS22105 -2.0 -4.7 cysteine synthase CysM compare
PFLU_RS29480 -2.0 -9.4 exodeoxyribonuclease III compare
PFLU_RS05210 -2.0 -2.0 HU family DNA-binding protein compare
PFLU_RS22005 -2.0 -9.2 cobyric acid synthase compare
PFLU_RS03860 -2.0 -3.7 hypothetical protein compare
PFLU_RS02430 -2.0 -11.3 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS03585 -2.0 -2.0 hypothetical protein compare
PFLU_RS08145 -2.0 -5.8 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS03765 -2.0 -7.6 sulfate adenylyltransferase subunit CysD compare
PFLU_RS07215 -2.0 -6.6 hypothetical protein compare
PFLU_RS11980 -2.0 -4.6 precorrin-6A synthase (deacetylating) compare
PFLU_RS13485 -1.9 -10.1 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS02990 -1.9 -4.3 precorrin-3B C(17)-methyltransferase compare
PFLU_RS28370 -1.9 -5.3 YggS family pyridoxal phosphate-dependent enzyme compare
PFLU_RS13020 -1.9 -2.3 cobalamin biosynthesis protein compare
PFLU_RS22895 -1.9 -11.4 PLP-dependent aminotransferase family protein compare
PFLU_RS28650 -1.9 -3.8 RNA pyrophosphohydrolase compare
PFLU_RS16410 -1.9 -11.6 glycogen synthase GlgA compare
PFLU_RS07665 -1.9 -1.3 type I DNA topoisomerase compare
PFLU_RS27630 -1.9 -3.7 dethiobiotin synthase compare


Specific Phenotypes

For 19 genes in this experiment

For stress D,L-Malic Acid in Pseudomonas fluorescens SBW25-INTG

For stress D,L-Malic Acid across organisms