Experiment set16IT025 for Klebsiella michiganensis M5al

Compare to:

rhizosphere EcoFAB sample 3; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
BWI76_RS26395 -10.5 -3.5 cell division protein FtsE compare
BWI76_RS20190 -10.3 -3.6 NADH-quinone oxidoreductase subunit A compare
BWI76_RS26390 -10.1 -4.8 cell division protein FtsX compare
BWI76_RS20135 -9.3 -3.2 NADH-quinone oxidoreductase subunit M compare
BWI76_RS20270 -8.2 -4.6 hypothetical protein compare
BWI76_RS26190 -7.8 -4.3 glycerol-3-phosphate dehydrogenase compare
BWI76_RS20995 -7.7 -3.4 RNA degradosome polyphosphate kinase compare
BWI76_RS20165 -7.6 -4.0 NADH-quinone oxidoreductase subunit G compare
BWI76_RS08205 -7.6 -3.7 DNA-binding transcriptional dual regulator NagC compare
BWI76_RS20170 -7.5 -3.2 NADH-quinone oxidoreductase subunit F compare
BWI76_RS24850 -7.5 -4.6 DeoR family transcriptional regulator compare
BWI76_RS01210 -7.5 -2.6 tyrosine recombinase XerC compare
BWI76_RS01115 -7.4 -2.5 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS22240 -7.3 -3.8 transcriptional regulator compare
BWI76_RS19705 -7.2 -3.5 kinase compare
BWI76_RS06525 -7.2 -4.3 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS26460 -7.2 -3.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS20160 -7.1 -2.8 NADH-quinone oxidoreductase subunit H compare
BWI76_RS26245 -6.9 -3.0 transcriptional regulator compare
BWI76_RS08725 -6.8 -4.1 Formiminoglutamase (EC 3.5.3.8) (from data) compare
BWI76_RS02815 -6.7 -2.3 fructose-bisphosphatase class I compare
BWI76_RS06530 -6.7 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS23265 -6.5 -1.9 hypothetical protein compare
BWI76_RS20150 -6.5 -2.2 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS20140 -6.4 -4.7 NADH-quinone oxidoreductase subunit L compare
BWI76_RS08395 -6.4 -1.3 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS06535 -6.4 -4.3 endopeptidase La compare
BWI76_RS27475 -6.4 -10.7 regulatory protein GntR family protein compare
BWI76_RS09645 -6.3 -1.3 thioredoxin-disulfide reductase compare
BWI76_RS25280 -6.3 -1.3 RNase adaptor protein RapZ compare
BWI76_RS24105 -6.2 -3.2 resistance protein compare
BWI76_RS08720 -6.2 -2.2 imidazolonepropionase compare
BWI76_RS07675 -6.2 -4.1 DeoR family transcriptional regulator compare
BWI76_RS08385 -6.1 -2.0 citrate (Si)-synthase compare
BWI76_RS20145 -6.1 -1.2 NADH-quinone oxidoreductase subunit K compare
BWI76_RS04705 -6.1 -3.9 DNA-binding transcriptional regulator FruR compare
BWI76_RS06490 -6.1 -5.3 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS05470 -6.0 -8.7 acyl-CoA dehydrogenase compare
BWI76_RS20180 -6.0 -4.4 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS16235 -6.0 -2.3 membrane protein compare
BWI76_RS02550 -5.9 -5.0 protease modulator HflC compare
BWI76_RS26455 -5.9 -1.7 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS24740 -5.9 -2.5 GntR family transcriptional regulator compare
BWI76_RS25335 -5.8 -2.0 stringent starvation protein A compare
BWI76_RS01125 -5.8 -3.4 4-alpha-L-fucosyltransferase compare
BWI76_RS25420 -5.8 -4.9 malate dehydrogenase compare
BWI76_RS23360 -5.8 -2.2 diaminopimelate decarboxylase compare
BWI76_RS01110 -5.8 -2.4 TDP-fucosamine acetyltransferase compare
BWI76_RS21535 -5.7 -4.2 inner membrane protein YpjD compare
BWI76_RS22420 -5.7 -1.6 LacI family transcriptional regulator compare
BWI76_RS04605 -5.7 -1.1 thiamine ABC transporter ATP-binding protein compare
BWI76_RS25960 -5.7 -3.2 NUDIX hydrolase compare
BWI76_RS16965 -5.7 -1.6 murein lipoprotein compare
BWI76_RS07435 -5.7 -3.3 LacI family transcriptional regulator compare
BWI76_RS20130 -5.6 -3.6 NADH-quinone oxidoreductase subunit N compare
BWI76_RS02610 -5.6 -5.0 transcriptional regulator compare
BWI76_RS08210 -5.6 -1.6 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS17720 -5.6 -1.1 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS06730 -5.5 -1.6 lac repressor compare
BWI76_RS04515 -5.5 -1.1 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS11110 -5.4 -1.5 cell division protein YceG compare
BWI76_RS04510 -5.4 -1.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS08520 -5.4 -1.9 colicin transporter TolQ compare
BWI76_RS19840 -5.4 -1.1 hypothetical protein compare
BWI76_RS08405 -5.4 -2.4 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS26440 -5.4 -1.1 hypothetical protein compare
BWI76_RS20155 -5.3 -1.8 NADH-quinone oxidoreductase subunit I compare
BWI76_RS00600 -5.3 -4.2 LacI family transcriptional regulator compare
BWI76_RS01135 -5.3 -4.5 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS22625 -5.3 -1.5 transcriptional regulator compare
BWI76_RS18455 -5.3 -1.1 tRNA-Ser compare
BWI76_RS09615 -5.3 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS08430 -5.3 -3.7 succinate--CoA ligase subunit alpha compare
BWI76_RS26665 -5.2 -3.2 DNA-binding response regulator compare
BWI76_RS17975 -5.2 -4.7 tail-specific protease compare
BWI76_RS21070 -5.1 -1.8 outer membrane protein assembly factor BamB compare
BWI76_RS11190 -5.1 -1.5 putative TetR/AcrR family transcriptional regulatory protein compare
BWI76_RS24100 -5.1 -2.6 YggS family pyridoxal phosphate enzyme compare
BWI76_RS00295 -5.0 -6.3 transcriptional regulator RbsR compare
BWI76_RS00240 -5.0 -2.0 FMN-binding protein MioC compare
BWI76_RS07985 -5.0 -1.0 fluoride ion transporter CrcB compare
BWI76_RS01105 -4.9 -4.1 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS04715 -4.8 -1.3 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS20360 -4.8 -1.0 cell division protein DedD compare
BWI76_RS19770 -4.8 -1.3 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS05120 -4.8 -6.2 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS06485 -4.8 -1.3 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS27170 -4.8 -6.3 MltR family transcriptional regulator compare
BWI76_RS00755 -4.7 -2.9 ATP-dependent protease subunit HslV compare
BWI76_RS00875 -4.7 -4.6 DNA-binding transcriptional regulator FabR compare
BWI76_RS21580 -4.7 -1.6 SsrA-binding protein compare
BWI76_RS26410 -4.6 -1.3 membrane protein compare
BWI76_RS04305 -4.5 -0.9 molecular chaperone DnaJ compare
BWI76_RS19040 -4.5 -4.8 hypothetical protein compare
BWI76_RS01095 -4.4 -2.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS25600 -4.4 -0.9 tRNA-Thr compare
BWI76_RS02580 -4.4 -1.5 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS02545 -4.4 -4.7 protease modulator HflK compare
BWI76_RS26940 -4.4 -4.8 transcriptional regulator compare
BWI76_RS17800 -4.3 -4.7 long-chain-fatty-acid--CoA ligase compare
BWI76_RS01090 -4.3 -4.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS13590 -4.3 -1.4 hypothetical protein compare
BWI76_RS04160 -4.3 -5.2 phosphoserine phosphatase compare
BWI76_RS08525 -4.2 -1.4 colicin transporter compare
BWI76_RS24400 -4.2 -5.8 outer membrane channel protein TolC compare
BWI76_RS08530 -4.1 -1.2 protein TolA compare
BWI76_RS03415 -4.1 -4.2 LacI family transcriptional regulator compare
BWI76_RS01120 -4.1 -6.6 O-antigen translocase compare
BWI76_RS19035 -4.0 -8.2 dTDP-rhamnosyl transferase compare
BWI76_RS05260 -4.0 -1.1 chaperone compare
BWI76_RS08425 -4.0 -2.8 succinyl-CoA ligase subunit beta compare
BWI76_RS01350 -4.0 -0.8 NAD(P)H-flavin reductase compare
BWI76_RS11285 -4.0 -1.1 transcriptional regulator compare
BWI76_RS07465 -3.9 -1.0 TetR family transcriptional regulator compare
BWI76_RS15955 -3.9 -2.9 transcriptional regulator compare
BWI76_RS13480 -3.9 -1.1 XRE family transcriptional regulator compare
BWI76_RS00065 -3.8 -5.5 MurR/RpiR family transcriptional regulator compare
BWI76_RS16955 -3.8 -0.8 hypothetical protein compare
BWI76_RS24900 -3.8 -1.5 DeoR family transcriptional regulator compare
BWI76_RS26085 -3.8 -1.3 3-dehydroquinate synthase compare
BWI76_RS24925 -3.7 -1.8 DnaA initiator-associating protein DiaA compare
BWI76_RS14400 -3.7 -4.0 ISNCY family transposase compare
BWI76_RS05915 -3.7 -2.0 helix-turn-helix transcriptional regulator compare
BWI76_RS09640 -3.7 -1.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS09725 -3.7 -2.1 MurR/RpiR family transcriptional regulator compare
BWI76_RS27440 -3.6 -4.0 DNA helicase RecG compare
BWI76_RS01080 -3.6 -7.0 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS21980 -3.5 -2.0 hypothetical protein compare
BWI76_RS25065 -3.5 -2.8 polyribonucleotide nucleotidyltransferase compare
BWI76_RS10305 -3.5 -6.4 transposase compare
BWI76_RS08535 -3.5 -1.2 translocation protein TolB compare
BWI76_RS27165 -3.5 -4.3 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS00750 -3.5 -3.4 ATP-dependent protease ATP-binding subunit HslU compare
BWI76_RS07725 -3.5 -1.0 iron-enterobactin transporter permease compare
BWI76_RS16240 -3.5 -1.4 anti-adapter protein IraM compare
BWI76_RS13820 -3.4 -1.5 hypothetical protein compare
BWI76_RS23885 -3.4 -1.0 2-octaprenylphenol hydroxylase compare
BWI76_RS00400 -3.4 -1.2 glutamine synthetase compare
BWI76_RS26075 -3.4 -3.0 DNA adenine methylase compare
BWI76_RS09660 -3.4 -1.5 DNA translocase FtsK compare
BWI76_RS02340 -3.4 -4.0 membrane protein FxsA compare
BWI76_RS27225 -3.4 -2.8 rhodanese-like domain-containing protein compare
BWI76_RS12750 -3.3 -2.1 hypothetical protein compare
BWI76_RS01800 -3.3 -3.5 glucose-6-phosphate isomerase compare
BWI76_RS06520 -3.3 -4.4 trigger factor compare
BWI76_RS01385 -3.3 -1.6 potassium transporter compare
BWI76_RS15115 -3.2 -6.2 MFS transporter compare
BWI76_RS04100 -3.2 -2.7 peptide chain release factor 3 compare
BWI76_RS22090 -3.2 -2.4 transcriptional regulator compare
BWI76_RS26670 -3.2 -5.8 two-component sensor histidine kinase compare
BWI76_RS14320 -3.2 -1.4 hypothetical protein compare
BWI76_RS14305 -3.2 -2.0 metallophosphoesterase compare
BWI76_RS00140 -3.1 -0.6 phosphate transport system regulator PhoU compare
BWI76_RS14650 -3.1 -1.8 helix-turn-helix transcriptional regulator compare
BWI76_RS25425 -3.1 -0.9 arginine repressor compare
BWI76_RS24605 -3.1 -6.5 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS14325 -3.1 -2.2 maturase compare
BWI76_RS12070 -3.1 -0.9 hypothetical protein compare
BWI76_RS20435 -3.1 -0.9 chorismate synthase compare
BWI76_RS03880 -3.1 -1.3 homoprotocatechuate degradation operon regulator, HpaR compare
BWI76_RS19055 -3.1 -6.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BWI76_RS24635 -3.1 -3.0 autoinducer-2 (AI-2) modifying protein LsrG compare
BWI76_RS26175 -3.1 -3.8 DeoR/GlpR family transcriptional regulator compare
BWI76_RS08605 -3.1 -1.8 phosphoglyceromutase compare
BWI76_RS05200 -3.0 -1.6 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS02745 -3.0 -1.1 hypothetical protein compare
BWI76_RS12090 -3.0 -2.0 HNH endonuclease compare
BWI76_RS09635 -3.0 -1.2 amino acid ABC transporter ATP-binding protein compare
BWI76_RS21810 -3.0 -1.2 universal stress protein compare
BWI76_RS06495 -3.0 -5.7 cytochrome ubiquinol oxidase subunit II compare
BWI76_RS13755 -3.0 -0.8 hypothetical protein compare
BWI76_RS19905 -2.9 -2.8 OmpK36 porin compare
BWI76_RS00865 -2.9 -1.8 DNA-binding transcriptional regulator OxyR compare
BWI76_RS06545 -2.9 -2.5 peptidylprolyl isomerase compare
BWI76_RS17740 -2.9 -6.3 SpoVR family protein compare
BWI76_RS20470 -2.9 -3.9 long-chain fatty acid transporter compare
BWI76_RS21370 -2.9 -0.8 ATP-dependent RNA helicase SrmB compare
BWI76_RS15480 -2.9 -5.5 GntR family transcriptional regulator compare
BWI76_RS07120 -2.9 -7.5 LacI family transcriptional regulator compare
BWI76_RS19010 -2.8 -2.0 polysaccharide pyruvyl transferase yvff compare
BWI76_RS22485 -2.8 -1.9 hypothetical protein compare
BWI76_RS11805 -2.8 -2.7 hypothetical protein compare
BWI76_RS09755 -2.8 -3.8 phosphoserine transaminase compare
BWI76_RS24075 -2.8 -3.3 glutathione synthase compare
BWI76_RS09255 -2.8 -1.1 hypothetical protein compare
BWI76_RS24595 -2.8 -3.0 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS16290 -2.8 -2.9 Mal regulon transcriptional regulator MalI compare
BWI76_RS04645 -2.7 -1.8 3-dehydroquinase compare
BWI76_RS25645 -2.7 -4.4 shikimate dehydrogenase compare
BWI76_RS04530 -2.7 -1.2 peptidylprolyl isomerase SurA compare
BWI76_RS01220 -2.7 -4.4 DNA-dependent helicase II compare
BWI76_RS27235 -2.7 -7.2 murein hydrolase activator EnvC compare
BWI76_RS23530 -2.7 -3.1 MarR family transcriptional regulator compare
BWI76_RS01100 -2.7 -3.0 dTDP-glucose 4,6-dehydratase compare
BWI76_RS17775 -2.6 -1.4 hypothetical protein compare
BWI76_RS19730 -2.6 -2.3 1-phosphofructokinase compare
BWI76_RS23875 -2.6 -2.6 glycine cleavage system protein H compare
BWI76_RS04255 -2.6 -7.3 threonine synthase compare
BWI76_RS21690 -2.6 -0.9 hypothetical protein compare
BWI76_RS14915 -2.6 -1.2 hypothetical protein compare


Specific Phenotypes

For 83 genes in this experiment