Experiment set16IT012 for Bifidobacterium breve UCC2003

Compare to:

chicken 3; day 3; diet=StandardDiet; sample=FecalPellet

Group: chicken
Media: + diet=StandardDiet; sample=FecalPellet
Culturing: Bifido_ML2
By: Anthony Shiver on 4/4/2021

Specific Phenotypes

For 22 genes in this experiment

For chicken diet=StandardDiet; sample=FecalPellet in Bifidobacterium breve UCC2003

For chicken diet=StandardDiet; sample=FecalPellet across organisms

SEED Subsystems

Subsystem #Specific
DNA repair, UvrABC system 2
Ammonia assimilation 1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis 1
Histidine Biosynthesis 1
Transport of Zinc 1
ZZ gjo need homes 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-serine degradation 3 3 3
cis-cyclopropane fatty acid (CFA) biosynthesis 1 1 1
L-cysteine degradation II 3 3 2
L-tryptophan degradation II (via pyruvate) 3 2 2
D-serine degradation 3 2 2
L-glutamate degradation II 2 2 1
sterculate biosynthesis 2 1 1
glycine betaine degradation III 7 3 3
felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis 5 2 2
glycine betaine degradation I 8 3 3
L-methionine biosynthesis II 6 5 2
L-aspartate degradation II (aerobic) 3 2 1
L-aspartate degradation III (anaerobic) 3 2 1
glycine degradation 3 1 1
L-mimosine degradation 8 4 2
superpathway of L-aspartate and L-asparagine biosynthesis 4 2 1
glutathione-mediated detoxification I 8 2 2
L-canavanine degradation II 6 1 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 13 2
purine nucleobases degradation II (anaerobic) 24 8 3
L-histidine biosynthesis 10 10 1
superpathway of histidine, purine, and pyrimidine biosynthesis 46 39 1
mycolate biosynthesis 205 17 3
superpathway of mycolate biosynthesis 239 18 3