Experiment set16IT009 for Bifidobacterium breve UCC2003

Compare to:

chicken 3; day 2; diet=StandardDiet; sample=FecalPellet

200 most important genes:

  gene name fitness t score description  
BBR_RS13040 -8.1 -5.6 CHAP domain-containing protein compare
BBR_RS10285 -8.1 -5.0 membrane protein compare
BBR_RS16960 -7.8 -5.4 transcriptional regulator MraZ compare
BBR_RS16905 -7.8 -7.6 hypothetical protein compare
BBR_RS13035 -7.7 -5.3 ABC transporter permease compare
BBR_RS19125 -7.7 -12.8 hypothetical protein compare
BBR_RS14205 -7.6 -5.3 hypothetical protein compare
BBR_RS14190 -7.5 -10.2 transcriptional regulator compare
BBR_RS14210 -7.4 -5.1 hypothetical protein compare
BBR_RS11720 -7.2 -8.6 DUF2469 domain-containing protein compare
BBR_RS13030 -7.2 -7.0 cell division ATP-binding protein FtsE compare
BBR_RS12045 -7.1 -4.9 hypothetical protein compare
BBR_RS19120 -7.0 -10.7 helicase compare
BBR_RS16940 -6.9 -4.8 hypothetical protein compare
BBR_RS18735 -6.9 -11.5 hypothetical protein compare
BBR_RS16750 -6.9 -4.8 ParA family protein compare
BBR_RS15675 -6.8 -4.7 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS16490 -6.8 -4.7 polyprenyl synthase compare
BBR_RS15680 -6.5 -6.3 succinate--CoA ligase subunit alpha compare
BBR_RS10660 -6.5 -14.5 esterase compare
BBR_RS16425 -6.4 -4.4 DUF3071 domain-containing protein compare
BBR_RS10720 -6.3 -9.6 PDZ domain-containing protein compare
BBR_RS14215 -6.1 -7.3 peptidase compare
BBR_RS17510 -6.1 -12.3 VWA domain-containing protein compare
BBR_RS16885 -6.0 -5.9 carbohydrate kinase compare
BBR_RS17515 -6.0 -12.8 hypothetical protein compare
BBR_RS12910 -6.0 -8.2 galactokinase compare
BBR_RS17500 -5.9 -12.7 hypothetical protein compare
BBR_RS16955 -5.9 -4.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS20195 -5.8 -14.6 ROK family transcriptional regulator compare
BBR_RS10615 -5.8 -5.6 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS10580 -5.8 -4.0 septation inhibitor protein compare
BBR_RS17490 -5.7 -19.7 MoxR family ATPase compare
BBR_RS11540 -5.7 -3.9 DUF1727 domain-containing protein compare
BBR_RS12995 -5.7 -5.6 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS20370 -5.7 -10.9 hypothetical protein compare
BBR_RS17990 -5.6 -9.4 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS18565 -5.6 -3.5 CHAP domain-containing protein compare
BBR_RS15395 -5.6 -3.9 tRNA (adenine-N1)-methyltransferase compare
BBR_RS12555 -5.6 -3.9 protein-tyrosine-phosphatase compare
BBR_RS15785 -5.6 -3.9 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS20375 -5.6 -21.7 glycosyl hydrolase compare
BBR_RS15070 -5.6 -3.9 endolytic transglycosylase MltG compare
BBR_RS13380 -5.6 -5.4 amidophosphoribosyltransferase compare
BBR_RS19395 -5.5 -4.0 hypothetical protein compare
BBR_RS20200 -5.5 -9.9 alpha-galactosidase compare
BBR_RS16950 -5.5 -2.8 hypothetical protein compare
BBR_RS13700 -5.5 -9.1 diaminopimelate epimerase compare
BBR_RS13445 -5.5 -3.8 phosphoribosylformylglycinamidine synthase compare
BBR_RS19555 -5.4 -24.3 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BBR_RS20190 -5.4 -16.4 Raffinose-binding protein compare
BBR_RS20415 -5.4 -20.7 G5 domain-containing protein compare
BBR_RS12900 -5.4 -3.7 DeoR/GlpR transcriptional regulator compare
BBR_RS12840 -5.4 -6.4 DUF4916 domain-containing protein compare
BBR_RS16985 -5.3 -6.7 transcriptional repressor LexA compare
BBR_RS17455 -5.3 -3.7 DNA-binding response regulator compare
BBR_RS15695 -5.3 -10.8 membrane channel protein compare
BBR_RS13805 -5.3 -3.3 hypothetical protein compare
BBR_RS12940 -5.3 -12.3 hypothetical protein compare
BBR_RS20180 -5.2 -17.4 carbohydrate ABC transporter permease compare
BBR_RS19260 -5.2 -26.3 hypothetical protein compare
BBR_RS19155 -5.2 -5.1 phosphate ABC transporter, permease protein PstA compare
BBR_RS12820 -5.1 -7.8 hypothetical protein compare
BBR_RS19755 -5.1 -6.1 glycosyl transferase compare
BBR_RS20465 -5.1 -5.0 chromosome partitioning protein compare
BBR_RS17505 -5.0 -17.2 VWA domain-containing protein compare
BBR_RS12040 -5.0 -10.8 peptidyl-prolyl cis-trans isomerase compare
BBR_RS14230 -5.0 -3.5 HAMP domain-containing histidine kinase compare
BBR_RS17495 -5.0 -15.7 DUF58 domain-containing protein compare
BBR_RS20185 -4.9 -18.8 sugar ABC transporter permease compare
BBR_RS12905 -4.9 -3.4 galactose-1-phosphate uridylyltransferase compare
BBR_RS10555 -4.9 -2.6 DUF3073 domain-containing protein compare
BBR_RS16610 -4.9 -4.8 hypothetical protein compare
BBR_RS19760 -4.9 -3.4 polysaccharide ABC transporter ATPase compare
BBR_RS18575 -4.9 -3.4 hypothetical protein compare
BBR_RS18635 -4.8 -5.8 PspC domain-containing protein compare
BBR_RS12975 -4.8 -10.3 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS12980 -4.8 -10.3 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS17290 -4.8 -4.6 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS19095 -4.8 -15.6 magnesium transporter compare
BBR_RS15935 -4.7 -7.9 hypothetical protein compare
BBR_RS19165 -4.7 -3.2 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS12895 -4.7 -12.9 quinone-dependent dihydroorotate dehydrogenase compare
BBR_RS19945 -4.7 -7.9 MarR family transcriptional regulator compare
BBR_RS15080 -4.7 -3.2 chorismate synthase compare
BBR_RS20920 -4.7 -7.1 hypothetical protein compare
BBR_RS19645 -4.6 -8.9 RNA degradosome polyphosphate kinase compare
BBR_RS16255 -4.6 -3.2 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS14200 -4.6 -7.0 WhiB family transcriptional regulator compare
BBR_RS18180 -4.6 -9.4 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS19170 -4.6 -18.3 DNA-binding response regulator compare
BBR_RS16605 -4.6 -10.7 hypothetical protein compare
BBR_RS20720 -4.6 -7.0 DUF4422 domain-containing protein compare
BBR_RS13770 -4.6 -3.1 DNA repair protein RecO compare
BBR_RS13375 -4.6 -4.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS20175 -4.6 -20.1 LacI family transcriptional regulator compare
BBR_RS10755 -4.5 -4.4 adenylosuccinate synthase compare
BBR_RS21165 -4.5 -2.7 hypothetical protein compare
BBR_RS13735 -4.5 -1.6 Lon protease compare
BBR_RS13450 -4.4 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS18215 -4.4 -8.4 AI-2E family transporter compare
BBR_RS18690 -4.4 -7.9 diacylglycerol kinase compare
BBR_RS10445 -4.4 -24.5 HlyC/CorC family transporter compare
BBR_RS11020 -4.4 -16.6 ACT domain-containing protein compare
BBR_RS13370 -4.3 -3.0 phosphoribosylamine--glycine ligase compare
BBR_RS14220 -4.3 -8.5 phosphomannomutase compare
BBR_RS14080 -4.3 -3.8 hypothetical protein compare
BBR_RS15655 -4.3 -6.8 Holliday junction branch migration protein RuvA compare
BBR_RS14330 -4.3 -3.0 glycogen debranching enzyme GlgX compare
BBR_RS21170 -4.3 -5.1 membrane protein insertion efficiency factor YidD compare
BBR_RS12295 -4.2 -1.6 RNA-binding protein compare
BBR_RS19795 -4.2 -23.2 hypothetical protein compare
BBR_RS10620 -4.2 -2.9 phosphoprotein phosphatase compare
BBR_RS15805 -4.2 -7.5 prolipoprotein diacylglyceryl transferase compare
BBR_RS12235 -4.2 -1.5 hypothetical protein compare
BBR_RS12305 -4.2 -9.3 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS12550 -4.2 -12.8 sugar transferase compare
BBR_RS11415 -4.2 -16.0 amino acid ABC transporter substrate-binding protein compare
BBR_RS13490 -4.2 -1.5 30S ribosomal protein S7 compare
BBR_RS14170 -4.2 -12.2 hemolysin III compare
BBR_RS12460 -4.1 -10.0 LacI family DNA-binding transcriptional regulator compare
BBR_RS16635 -4.1 -2.8 ABC transporter ATP-binding protein compare
BBR_RS10565 -4.1 -27.5 glycogen/starch/alpha-glucan family phosphorylase compare
BBR_RS16430 -4.1 -2.8 nucleotide pyrophosphatase compare
BBR_RS16530 -4.1 -6.8 recombinase RecA compare
BBR_RS12545 -4.1 -2.8 DUF4012 domain-containing protein compare
BBR_RS19465 -4.0 -3.4 ribonuclease E/G compare
BBR_RS10905 -4.0 -5.9 nucleotide exchange factor GrpE compare
BBR_RS12590 -4.0 -4.0 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS13455 -4.0 -2.8 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS15085 -3.9 -2.5 3-dehydroquinate synthase compare
BBR_RS18595 -3.9 -17.3 1,4-dihydroxy-2-naphthoate octaprenyltransferase compare
BBR_RS11410 -3.9 -21.3 iron permease compare
BBR_RS11025 -3.9 -20.1 aspartate-semialdehyde dehydrogenase compare
BBR_RS13070 -3.9 -1.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS16555 -3.8 -1.4 DNA translocase FtsK compare
BBR_RS10265 -3.8 -13.8 DNA replication and repair protein RecF compare
BBR_RS20460 -3.8 -2.6 chromosome partitioning protein ParB compare
BBR_RS11180 -3.8 -16.5 phosphatase PAP2 family protein compare
BBR_RS18795 -3.8 -2.6 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS19740 -3.8 -17.4 DUF2142 domain-containing protein compare
BBR_RS19190 -3.7 -5.7 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS11510 -3.7 -1.9 signal recognition particle-docking protein FtsY compare
BBR_RS11015 -3.7 -14.9 aspartate kinase compare
BBR_RS16540 -3.6 -3.5 XRE family transcriptional regulator compare
BBR_RS15520 -3.6 -4.3 shikimate 5-dehydrogenase compare
BBR_RS21015 -3.6 -1.9 hypothetical protein compare
BBR_RS15130 -3.6 -2.9 metal-sulfur cluster assembly factor compare
BBR_RS17640 -3.6 -2.5 DNA-directed RNA polymerase subunit omega compare
BBR_RS10625 -3.6 -2.4 FHA domain-containing protein compare
BBR_RS15425 -3.6 -2.4 aspartate carbamoyltransferase compare
BBR_RS13705 -3.6 -7.2 Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain compare
BBR_RS18035 -3.6 -2.9 oligoribonuclease compare
BBR_RS10900 -3.6 -2.4 molecular chaperone DnaK compare
BBR_RS12375 -3.5 -2.2 pantetheine-phosphate adenylyltransferase compare
BBR_RS13125 -3.5 -1.4 ABC transporter permease compare
BBR_RS18745 -3.5 -1.8 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS16240 -3.5 -6.7 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS18185 -3.5 -5.9 hypoxanthine phosphoribosyltransferase compare
BBR_RS16755 -3.5 -6.2 site-specific tyrosine recombinase XerD compare
BBR_RS11315 -3.5 -15.9 MFS transporter compare
BBR_RS14370 -3.5 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS16250 -3.5 -4.6 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS15670 -3.5 -3.5 adenine phosphoribosyltransferase compare
BBR_RS15455 -3.5 -2.4 orotate phosphoribosyltransferase compare
BBR_RS13820 -3.5 -1.3 ATP-binding protein compare
BBR_RS11175 -3.5 -16.4 penicillin-binding protein compare
BBR_RS13630 -3.5 -2.4 carbamoyl-phosphate synthase small subunit compare
BBR_RS15050 -3.4 -3.3 DUF948 domain-containing protein compare
BBR_RS10940 -3.4 -11.9 DedA family protein compare
BBR_RS15440 -3.4 -2.3 orotidine-5'-phosphate decarboxylase compare
BBR_RS10990 -3.4 -9.6 recombination protein RecR compare
BBR_RS10665 -3.4 -24.6 DUF2156 domain-containing protein compare
BBR_RS16820 -3.4 -3.3 RNA polymerase sigma factor RpoE compare
BBR_RS13300 -3.4 -2.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS14470 -3.4 -5.4 hypothetical protein compare
BBR_RS16655 -3.3 -4.6 tyrosine recombinase XerC compare
BBR_RS20455 -3.3 -2.3 thioredoxin-disulfide reductase compare
BBR_RS16965 -3.3 -2.3 ATP-dependent DNA helicase compare
BBR_RS12310 -3.3 -2.4 signal recognition particle protein compare
BBR_RS14550 -3.3 -8.6 hypothetical protein compare
BBR_RS15660 -3.3 -6.6 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS13005 -3.3 -15.3 aminopeptidase N compare
BBR_RS11675 -3.2 -2.2 hypothetical protein compare
BBR_RS15055 -3.2 -2.2 hypothetical protein compare
BBR_RS15435 -3.2 -2.2 dihydroorotase compare
BBR_RS14265 -3.2 -7.7 Solute-binding protein of ABC transporter system for metals compare
BBR_RS15090 -3.2 -1.6 type II 3-dehydroquinate dehydratase compare
BBR_RS16625 -3.2 -6.1 DUF3710 domain-containing protein compare
BBR_RS20420 -3.1 -11.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS15685 -3.1 -11.5 hypothetical protein compare
BBR_RS20430 -3.1 -2.2 hypothetical protein compare
BBR_RS13635 -3.1 -2.1 carbamoyl-phosphate synthase large subunit compare
BBR_RS20145 -3.1 -18.4 alpha-1,4-glucosidase compare
BBR_RS13640 -3.1 -7.4 orotidine-5'-phosphate decarboxylase compare
BBR_RS20435 -3.1 -1.1 CCA tRNA nucleotidyltransferase compare
BBR_RS16675 -3.1 -5.4 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS19435 -3.0 -2.1 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS11640 -3.0 -2.5 hypothetical protein compare
BBR_RS16880 -3.0 -9.5 ROK family transcriptional regulator compare


Specific Phenotypes

For 12 genes in this experiment

For chicken diet=StandardDiet; sample=FecalPellet in Bifidobacterium breve UCC2003

For chicken diet=StandardDiet; sample=FecalPellet across organisms