Experiment set16IT009 for Bifidobacterium breve UCC2003
chicken 3; day 2; diet=StandardDiet; sample=FecalPellet
Group: chickenMedia: + diet=StandardDiet; sample=FecalPellet
Culturing: Bifido_ML2
By: Anthony Shiver on 4/4/2021
Specific Phenotypes
For 12 genes in this experiment
For chicken diet=StandardDiet; sample=FecalPellet in Bifidobacterium breve UCC2003
For chicken diet=StandardDiet; sample=FecalPellet across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Sialic Acid Metabolism | 1 |
| Transport of Zinc | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycine, serine and threonine metabolism
- Cysteine metabolism
- Nucleotide sugars metabolism
- Aminosugars metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-serine degradation | 3 | 3 | 3 |
| L-cysteine degradation II | 3 | 3 | 2 |
| D-serine degradation | 3 | 2 | 2 |
| L-tryptophan degradation II (via pyruvate) | 3 | 2 | 2 |
| glycine betaine degradation III | 7 | 3 | 3 |
| felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis | 5 | 2 | 2 |
| glycine betaine degradation I | 8 | 3 | 3 |
| L-methionine biosynthesis II | 6 | 5 | 2 |
| N-acetylneuraminate and N-acetylmannosamine degradation II | 3 | 1 | 1 |
| glycine degradation | 3 | 1 | 1 |
| L-mimosine degradation | 8 | 4 | 2 |
| glutathione-mediated detoxification I | 8 | 2 | 2 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis II | 15 | 13 | 2 |
| purine nucleobases degradation II (anaerobic) | 24 | 8 | 3 |