Experiment set15S509 for Ralstonia sp. UNC404CL21Col

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS08630 -5.4 -5.3 dihydroorotase compare
ABZR87_RS09465 -5.1 -10.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS13790 -4.4 -13.3 chorismate synthase compare
ABZR87_RS02145 -4.2 -4.1 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS16180 -3.9 -4.7 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS09935 -3.9 -2.7 amino acid aminotransferase compare
ABZR87_RS09445 -3.9 -14.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS14500 -3.9 -18.0 tryptophan synthase subunit beta compare
ABZR87_RS05100 -3.4 -10.9 RNA polymerase-binding protein DksA compare
ABZR87_RS02590 -3.4 -11.4 3-dehydroquinate synthase compare
ABZR87_RS14540 -3.3 -10.1 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS05170 -3.2 -3.1 acetylglutamate kinase compare
ABZR87_RS08625 -3.2 -2.2 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS00835 -3.1 -8.5 argininosuccinate synthase compare
ABZR87_RS07380 -3.1 -18.6 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02160 -3.0 -9.2 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS16170 -3.0 -8.3 argininosuccinate lyase compare
ABZR87_RS14490 -2.9 -12.0 tryptophan synthase subunit alpha compare
ABZR87_RS02155 -2.9 -7.7 anthranilate phosphoribosyltransferase compare
ABZR87_RS07050 -2.8 -1.9 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS02595 -2.8 -9.9 shikimate kinase compare
ABZR87_RS14530 -2.8 -12.3 3-isopropylmalate dehydrogenase compare
ABZR87_RS02480 -2.8 -5.2 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS11440 -2.7 -11.1 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS14955 -2.7 -9.9 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS18260 -2.6 -9.6 IlvD/Edd family dehydratase conserved
ABZR87_RS14505 -2.6 -6.4 phosphoribosylanthranilate isomerase compare
ABZR87_RS00435 -2.5 -11.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS02565 -2.4 -7.8 glutamate synthase subunit beta compare
ABZR87_RS13250 -2.4 -5.1 phosphoserine phosphatase SerB compare
ABZR87_RS14535 -2.4 -8.9 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS21795 -2.4 -6.6 NUDIX domain-containing protein compare
ABZR87_RS10240 -2.4 -2.7 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS09615 -2.4 -2.4 50S ribosomal protein L19 compare
ABZR87_RS12785 -2.3 -4.4 endopeptidase La compare
ABZR87_RS06495 -2.3 -3.7 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS01615 -2.3 -1.5 RNB domain-containing ribonuclease compare
ABZR87_RS06770 -2.3 -9.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS02570 -2.3 -18.7 glutamate synthase-related protein compare
ABZR87_RS22920 -2.3 -5.7 phosphogluconate dehydratase compare
ABZR87_RS02850 -2.2 -5.2 elongation factor Tu compare
ABZR87_RS12795 -2.2 -5.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS05025 -2.1 -3.7 rod shape-determining protein MreC compare
ABZR87_RS00185 -2.1 -5.0 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS01450 -2.1 -4.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS14115 -2.1 -4.3 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS12790 -2.1 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS01285 -2.0 -2.8 preprotein translocase subunit YajC compare
ABZR87_RS18245 -2.0 -8.6 fumarylacetoacetate hydrolase family protein conserved
ABZR87_RS09450 -2.0 -8.8 prephenate dehydratase compare
ABZR87_RS14950 -1.9 -3.2 acetolactate synthase small subunit compare
ABZR87_RS05350 -1.9 -7.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS15440 -1.9 -3.9 ribonuclease G compare
ABZR87_RS11760 -1.9 -2.2 membrane protein compare
ABZR87_RS10610 -1.9 -2.8 inositol monophosphatase family protein compare
ABZR87_RS11125 -1.9 -7.1 cell division protein ZapE compare
ABZR87_RS18220 -1.9 -9.4 D-xylose ABC transporter substrate-binding protein conserved
ABZR87_RS18235 -1.8 -5.2 SDR family oxidoreductase conserved
ABZR87_RS08700 -1.8 -7.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS10120 -1.8 -1.7 YceD family protein compare
ABZR87_RS14510 -1.8 -6.0 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS07360 -1.8 -11.5 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS02140 -1.8 -14.0 anthranilate synthase component I compare
ABZR87_RS10170 -1.8 -4.6 RseA family anti-sigma factor compare
ABZR87_RS01980 -1.7 -4.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS16960 -1.7 -4.4 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS04940 -1.7 -5.4 PAS domain-containing sensor histidine kinase compare
ABZR87_RS13475 -1.7 -6.9 PAS domain S-box protein compare
ABZR87_RS18225 -1.7 -8.2 D-xylose ABC transporter ATP-binding protein conserved
ABZR87_RS04125 -1.7 -7.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS08695 -1.6 -9.7 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS00200 -1.6 -4.3 phosphoadenylyl-sulfate reductase compare
ABZR87_RS05015 -1.6 -6.5 penicillin-binding protein 2 compare
ABZR87_RS09515 -1.6 -1.5 cysteine synthase CysM compare
ABZR87_RS11940 -1.6 -4.1 SsrA-binding protein SmpB compare
ABZR87_RS02655 -1.5 -8.2 anti-sigma factor compare
ABZR87_RS05010 -1.5 -4.8 rod shape-determining protein RodA compare
ABZR87_RS01110 -1.5 -9.3 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS05590 -1.5 -1.4 orotate phosphoribosyltransferase compare
ABZR87_RS00190 -1.5 -9.8 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS01810 -1.5 -4.7 glutamate 5-kinase compare
ABZR87_RS07035 -1.5 -7.7 RNase adapter RapZ compare
ABZR87_RS00195 -1.5 -4.4 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS10785 -1.5 -5.4 exodeoxyribonuclease V subunit beta compare
ABZR87_RS13300 -1.4 -7.7 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS07705 -1.4 -3.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS06250 -1.4 -3.5 hydroxymethylglutaryl-CoA lyase compare
ABZR87_RS07635 -1.4 -2.7 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS11015 -1.4 -5.7 amino-acid N-acetyltransferase compare
ABZR87_RS08655 -1.4 -4.2 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS04865 -1.4 -5.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS18215 -1.4 -7.1 DNA-binding transcriptional regulator conserved
ABZR87_RS16125 -1.3 -5.4 heme biosynthesis protein HemY compare
ABZR87_RS06715 -1.3 -2.7 PTS sugar transporter subunit IIA compare
ABZR87_RS18230 -1.3 -6.4 sugar ABC transporter permease conserved
ABZR87_RS05200 -1.3 -10.6 homoserine O-acetyltransferase compare
ABZR87_RS22970 -1.3 -8.8 cystathionine gamma-synthase family protein compare
ABZR87_RS07700 -1.3 -1.6 peptidylprolyl isomerase compare
ABZR87_RS00205 -1.3 -3.2 DUF934 domain-containing protein compare
ABZR87_RS14965 -1.2 -2.6 DUF3619 family protein compare
ABZR87_RS16185 -1.2 -1.9 dCTP deaminase compare
ABZR87_RS09710 -1.2 -4.0 tRNA-Arg compare
ABZR87_RS12960 -1.2 -1.6 head completion/stabilization protein compare
ABZR87_RS07510 -1.2 -4.2 LysR family transcriptional regulator compare
ABZR87_RS22690 -1.1 -3.9 XRE family transcriptional regulator compare
ABZR87_RS07005 -1.1 -1.5 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS01645 -1.1 -5.1 type II 3-dehydroquinate dehydratase compare
ABZR87_RS11370 -1.1 -4.9 DUF47 domain-containing protein compare
ABZR87_RS13415 -1.1 -5.6 IclR family transcriptional regulator compare
ABZR87_RS07625 -1.1 -2.3 Holliday junction branch migration protein RuvA compare
ABZR87_RS12800 -1.1 -5.7 trigger factor compare
ABZR87_RS00210 -1.1 -6.2 nitrite/sulfite reductase compare
ABZR87_RS00220 -1.1 -4.7 CysB family HTH-type transcriptional regulator compare
ABZR87_RS00970 -1.0 -1.7 molecular chaperone DnaJ compare
ABZR87_RS11195 -1.0 -7.1 pseudouridine synthase compare
ABZR87_RS18240 -1.0 -4.6 SMP-30/gluconolactonase/LRE family protein conserved
ABZR87_RS10780 -1.0 -3.5 PD-(D/E)XK nuclease family protein compare
ABZR87_RS08640 -1.0 -3.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS10565 -1.0 -4.2 cupin domain-containing protein compare
ABZR87_RS12130 -1.0 -1.0 LysR substrate-binding domain-containing protein compare
ABZR87_RS13175 -1.0 -1.9 tRNA-Leu compare
ABZR87_RS06855 -1.0 -3.5 RNA polymerase sigma factor RpoH compare
ABZR87_RS07620 -1.0 -2.5 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS00285 -0.9 -1.7 acetylornithine transaminase compare
ABZR87_RS00875 -0.9 -4.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS14375 -0.9 -2.4 fumarate hydratase compare
ABZR87_RS04785 -0.9 -6.0 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS16735 -0.9 -7.9 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS09625 -0.9 -6.3 CobD/CbiB family protein compare
ABZR87_RS11375 -0.9 -6.4 inorganic phosphate transporter compare
ABZR87_RS16730 -0.8 -4.1 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS09460 -0.8 -4.7 prephenate dehydrogenase compare
ABZR87_RS21245 -0.8 -1.2 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS20785 -0.8 -1.1 DUF2783 domain-containing protein compare
ABZR87_RS10175 -0.8 -3.3 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS01760 -0.8 -1.0 PP0621 family protein compare
ABZR87_RS10620 -0.8 -2.0 serine O-acetyltransferase compare
ABZR87_RS22485 -0.8 -3.4 FAD-dependent oxidoreductase compare
ABZR87_RS16990 -0.8 -2.8 5'-methylthioadenosine/adenosylhomocysteine nucleosidase compare
ABZR87_RS15705 -0.8 -2.4 UvrD-helicase domain-containing protein compare
ABZR87_RS02220 -0.8 -5.7 redox-regulated ATPase YchF compare
ABZR87_RS10045 -0.8 -2.0 lactate utilization protein C compare
ABZR87_RS09700 -0.8 -3.5 DEAD/DEAH box helicase compare
ABZR87_RS06270 -0.8 -4.0 enoyl-CoA hydratase/isomerase family protein compare
ABZR87_RS22415 -0.8 -1.8 universal stress protein compare
ABZR87_RS21815 -0.8 -0.9 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS20650 -0.8 -1.7 aspartate dehydrogenase compare
ABZR87_RS09635 -0.8 -1.9 ribosome small subunit-dependent GTPase A compare
ABZR87_RS18415 -0.8 -2.0 hypothetical protein compare
ABZR87_RS20880 -0.8 -4.3 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS13315 -0.7 -5.5 RluA family pseudouridine synthase compare
ABZR87_RS10700 -0.7 -5.3 C40 family peptidase compare
ABZR87_RS13285 -0.7 -4.9 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS09035 -0.7 -4.2 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS17650 -0.7 -4.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS13645 -0.7 -0.8 hypothetical protein compare
ABZR87_RS15240 -0.7 -1.0 YicC/YloC family endoribonuclease compare
ABZR87_RS01555 -0.7 -1.0 barstar family protein compare
ABZR87_RS06260 -0.7 -3.8 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
ABZR87_RS16130 -0.7 -2.8 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS08670 -0.7 -4.8 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS07675 -0.7 -4.8 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS11790 -0.7 -2.7 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS14970 -0.7 -2.6 DUF3106 domain-containing protein compare
ABZR87_RS06395 -0.7 -2.9 response regulator compare
ABZR87_RS11925 -0.7 -5.0 phosphoenolpyruvate synthase compare
ABZR87_RS20370 -0.6 -1.0 ABC transporter ATP-binding protein compare
ABZR87_RS22340 -0.6 -0.9 hypothetical protein compare
ABZR87_RS09820 -0.6 -2.0 RidA family protein compare
ABZR87_RS01675 -0.6 -1.4 carbohydrate kinase family protein compare
ABZR87_RS23380 -0.6 -1.4 chemotaxis protein CheW compare
ABZR87_RS10195 -0.6 -1.7 signal peptidase I compare
ABZR87_RS15500 -0.6 -3.3 glycosyltransferase compare
ABZR87_RS19050 -0.6 -2.6 glycosyltransferase family 39 protein compare
ABZR87_RS16660 -0.6 -3.2 helix-turn-helix domain-containing protein compare
ABZR87_RS06845 -0.6 -4.3 heme o synthase compare
ABZR87_RS08660 -0.6 -3.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS20875 -0.6 -3.4 LysR family transcriptional regulator compare
ABZR87_RS02575 -0.6 -3.5 transposase compare
ABZR87_RS07645 -0.6 -2.3 Fis family transcriptional regulator compare
ABZR87_RS21095 -0.6 -0.8 TRAP transporter small permease compare
ABZR87_RS07710 -0.6 -2.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR87_RS01165 -0.6 -1.6 VOC family protein compare
ABZR87_RS12150 -0.6 -1.7 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS00665 -0.6 -1.9 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS17125 -0.6 -2.2 DUF2141 domain-containing protein compare
ABZR87_RS01280 -0.6 -2.1 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS00745 -0.6 -1.4 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS09910 -0.6 -3.3 malonic semialdehyde reductase compare
ABZR87_RS14125 -0.6 -2.0 YhbY family RNA-binding protein compare
ABZR87_RS14450 -0.5 -2.0 glycine zipper 2TM domain-containing protein compare
ABZR87_RS22035 -0.5 -1.6 hypothetical protein compare
ABZR87_RS11420 -0.5 -1.4 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS10190 -0.5 -3.4 translation elongation factor 4 compare
ABZR87_RS17995 -0.5 -1.2 chemotaxis response regulator CheY compare
ABZR87_RS18315 -0.5 -2.0 DUF971 domain-containing protein compare
ABZR87_RS06280 -0.5 -3.1 carboxyl transferase domain-containing protein compare
ABZR87_RS02550 -0.5 -2.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS13350 -0.5 -2.2 potassium transporter Kup compare
ABZR87_RS08985 -0.5 -3.7 Tol-Pal system beta propeller repeat protein TolB compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Xylose in Ralstonia sp. UNC404CL21Col

For carbon source D-Xylose across organisms