Experiment set15S349 for Ralstonia solanacearum IBSBF1503

Compare to:

SMSA with Ralstonia_antibiotic_mix

200 most detrimental genes:

  gene name fitness t score description  
RALBFv3_RS14445 +1.5 7.2 RNA polymerase sigma factor RpoE compare
RALBFv3_RS19620 +1.3 7.4 LuxR family transcriptional regulator compare
RALBFv3_RS11470 +1.3 1.3 FmdB family transcriptional regulator compare
RALBFv3_RS05860 +1.2 7.8 LysR family transcriptional regulator compare
RALBFv3_RS00410 +1.2 2.6 RIP metalloprotease RseP compare
RALBFv3_RS03110 +1.2 1.1 DUF924 domain-containing protein compare
RALBFv3_RS19630 +1.2 4.6 RNA polymerase sigma factor compare
RALBFv3_RS15440 +1.0 1.0 rhizopine-binding protein compare
RALBFv3_RS03760 +0.9 0.8 membrane protein compare
RALBFv3_RS09800 +0.9 1.5 sensor histidine kinase compare
RALBFv3_RS01645 +0.9 1.2 phasin; polyhydroxyalkanoate synthesis and granule formation regulator/factor compare
RALBFv3_RS19615 +0.9 3.5 DNA-binding response regulator compare
RALBFv3_RS17020 +0.8 1.6 glycerate kinase compare
RALBFv3_RS05805 +0.8 5.3 hybrid sensor histidine kinase/response regulator compare
RALBFv3_RS01130 +0.8 4.0 3-hydroxyacyl-CoA dehydrogenase compare
RALBFv3_RS03845 +0.8 0.8 4-carboxymuconolactone decarboxylase compare
RALBFv3_RS06575 +0.8 1.7 hypothetical protein compare
RALBFv3_RS19450 +0.8 5.7 TonB-dependent receptor compare
RALBFv3_RS06695 +0.8 1.7 alpha/beta hydrolase compare
RALBFv3_RS19230 +0.8 2.0 acyl-CoA dehydrogenase compare
RALBFv3_RS19235 +0.7 1.0 MFS transporter compare
RALBFv3_RS13010 +0.7 4.5 DUF883 domain-containing protein compare
RALBFv3_RS19570 +0.7 2.3 YscQ/HrcQ family type III secretion apparatus protein compare
RALBFv3_RS00320 +0.7 5.9 succinyldiaminopimelate transaminase compare
RALBFv3_RS16825 +0.7 3.2 hypothetical protein compare
RALBFv3_RS14305 +0.7 3.1 glycine zipper 2TM domain-containing protein compare
RALBFv3_RS21225 +0.7 2.5 2-hydroxyacid dehydrogenase compare
RALBFv3_RS13000 +0.7 3.5 DUF3318 domain-containing protein compare
RALBFv3_RS04340 +0.7 0.9 superoxide dismutase family protein compare
RALBFv3_RS05035 +0.7 2.5 hypothetical protein compare
RALBFv3_RS23385 +0.7 2.2 hypothetical protein compare
RALBFv3_RS02770 +0.7 0.7 LysR family transcriptional regulator compare
RALBFv3_RS16755 +0.7 2.2 respiratory nitrate reductase subunit gamma compare
RALBFv3_RS21535 +0.7 2.0 hypothetical protein compare
RALBFv3_RS04505 +0.7 0.9 cell division protein ZapA compare
RALBFv3_RS18260 +0.6 0.9 hypothetical protein compare
RALBFv3_RS07945 +0.6 1.5 hypothetical protein compare
RALBFv3_RS05800 +0.6 4.6 two-component sensor histidine kinase compare
RALBFv3_RS19515 +0.6 1.8 EscT/YscT/HrcT family type III secretion system export apparatus protein compare
RALBFv3_RS00685 +0.6 1.5 carbon monoxide dehydrogenase compare
RALBFv3_RS01510 +0.6 0.5 hypothetical protein compare
RALBFv3_RS10640 +0.6 1.4 IclR family transcriptional regulator compare
RALBFv3_RS03885 +0.6 2.3 amino acid ABC transporter substrate-binding protein compare
RALBFv3_RS19470 +0.6 2.8 LysR family transcriptional regulator compare
RALBFv3_RS14820 +0.6 1.7 hypothetical protein compare
RALBFv3_RS20500 +0.6 1.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
RALBFv3_RS13175 +0.5 2.5 polyisoprenoid-binding protein compare
RALBFv3_RS03855 +0.5 1.9 3-carboxy-cis,cis-muconate cycloisomerase compare
RALBFv3_RS16315 +0.5 1.0 amino acid ABC transporter substrate-binding protein compare
RALBFv3_RS24495 +0.5 1.0 hypothetical protein compare
RALBFv3_RS00265 +0.5 2.3 D-aminopeptidase compare
RALBFv3_RS12780 +0.5 2.3 hypothetical protein compare
RALBFv3_RS13195 +0.5 2.1 tripartite tricarboxylate transporter TctB family protein compare
RALBFv3_RS21580 +0.5 2.2 flagellar assembly protein FliH compare
RALBFv3_RS11810 +0.5 2.9 hypothetical protein compare
RALBFv3_RS06245 +0.5 1.3 peroxiredoxin compare
RALBFv3_RS09490 +0.5 0.3 DUF3617 domain-containing protein compare
RALBFv3_RS01200 +0.5 1.2 peptidyl-prolyl cis-trans isomerase compare
RALBFv3_RS11425 +0.5 0.7 HIT family protein compare
RALBFv3_RS23675 +0.5 1.5 hypothetical protein compare
RALBFv3_RS05855 +0.5 2.9 ferric iron uptake transcriptional regulator compare
RALBFv3_RS01165 +0.5 1.6 branched-chain amino acid ABC transporter permease compare
RALBFv3_RS15500 +0.5 1.3 polysaccharide deacetylase family protein compare
RALBFv3_RS11290 +0.5 3.2 polysaccharide deacetylase family protein compare
RALBFv3_RS19305 +0.5 2.6 hypothetical protein compare
RALBFv3_RS02845 +0.5 2.5 urease accessory protein compare
RALBFv3_RS00120 +0.5 2.2 DNA-binding response regulator compare
RALBFv3_RS08970 +0.5 3.1 OmpW family protein compare
RALBFv3_RS07730 +0.5 1.0 general secretion pathway protein GspM compare
RALBFv3_RS24020 +0.5 2.4 hypothetical protein compare
RALBFv3_RS01265 +0.5 2.3 GDL motif peptide-associated radical SAM/SPASM maturase compare
RALBFv3_RS11010 +0.5 1.3 OsmC family peroxiredoxin compare
RALBFv3_RS23095 +0.5 2.3 N-acetyltransferase compare
RALBFv3_RS21665 +0.5 2.7 flagellar biosynthetic protein FliP compare
RALBFv3_RS01705 +0.5 1.0 homoprotocatechuate degradation operon regulator HpaR compare
RALBFv3_RS02475 +0.5 1.8 activator of HSP90 ATPase compare
RALBFv3_RS19390 +0.5 1.5 XRE family transcriptional regulator compare
RALBFv3_RS01980 +0.5 1.6 hypothetical protein compare
RALBFv3_RS00790 +0.5 0.9 NADH oxidase compare
RALBFv3_RS11210 +0.5 1.2 glutamine amidotransferase compare
RALBFv3_RS11225 +0.5 1.6 Na/Pi cotransporter family protein compare
RALBFv3_RS20585 +0.5 1.6 DUF2784 domain-containing protein compare
RALBFv3_RS19505 +0.5 2.3 EscC/YscC/HrcC family type III secretion system outer membrane ring protein compare
RALBFv3_RS03020 +0.5 0.8 membrane protein compare
RALBFv3_RS04310 +0.5 1.5 type I-E CRISPR-associated protein Cse2/CasB compare
RALBFv3_RS14640 +0.5 1.6 naphthalene 1,2-dioxygenase compare
RALBFv3_RS19285 +0.5 1.4 integrase compare
RALBFv3_RS18795 +0.5 0.9 BON domain-containing protein compare
RALBFv3_RS18400 +0.5 2.3 hypothetical protein compare
RALBFv3_RS05795 +0.5 3.9 class I SAM-dependent methyltransferase compare
RALBFv3_RS09945 +0.5 1.4 nitronate monooxygenase compare
RALBFv3_RS19560 +0.4 2.5 EscV/YscV/HrcV family type III secretion system export apparatus protein compare
RALBFv3_RS24170 +0.4 0.7 hypothetical protein compare
RALBFv3_RS14005 +0.4 0.8 hypothetical protein compare
RALBFv3_RS14675 +0.4 1.4 hypothetical protein compare
RALBFv3_RS15825 +0.4 1.4 peroxiredoxin compare
RALBFv3_RS19315 +0.4 2.0 hypothetical protein compare
RALBFv3_RS19870 +0.4 2.3 LysR family transcriptional regulator compare
RALBFv3_RS18295 +0.4 1.8 hypothetical protein compare
RALBFv3_RS10670 +0.4 2.2 hypothetical protein compare
RALBFv3_RS06745 +0.4 2.7 2-alkenal reductase compare
RALBFv3_RS24025 +0.4 1.9 hypothetical protein compare
RALBFv3_RS14510 +0.4 1.7 beta-N-acetylhexosaminidase compare
RALBFv3_RS04815 +0.4 2.4 ATP-dependent Clp protease adaptor ClpS compare
RALBFv3_RS24270 +0.4 0.8 hypothetical protein compare
RALBFv3_RS11525 +0.4 2.6 acetyl-CoA acetyltransferase compare
RALBFv3_RS01745 +0.4 2.5 carboxymuconolactone decarboxylase family protein compare
RALBFv3_RS16040 +0.4 1.9 nuclear transport factor 2 family protein compare
RALBFv3_RS22690 +0.4 2.4 hypothetical protein compare
RALBFv3_RS11260 +0.4 1.5 low specificity L-threonine aldolase compare
RALBFv3_RS17755 +0.4 1.1 DUF1488 domain-containing protein compare
RALBFv3_RS03520 +0.4 1.8 3-oxoacyl-ACP reductase compare
RALBFv3_RS00695 +0.4 0.5 MoxR family ATPase compare
RALBFv3_RS24515 +0.4 0.9 hypothetical protein compare
RALBFv3_RS12890 +0.4 1.6 transcriptional regulator NrdR compare
RALBFv3_RS20345 +0.4 1.3 RND transporter compare
RALBFv3_RS07630 +0.4 1.9 DNA repair protein compare
RALBFv3_RS24785 +0.4 0.6 hypothetical protein compare
RALBFv3_RS08980 +0.4 1.4 lysoplasmalogenase compare
RALBFv3_RS10315 +0.4 0.5 RNA 3'-terminal phosphate cyclase compare
RALBFv3_RS10605 +0.4 1.4 hypothetical protein compare
RALBFv3_RS05575 +0.4 1.3 YggS family pyridoxal phosphate-dependent enzyme compare
RALBFv3_RS03315 +0.4 2.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
RALBFv3_RS22005 +0.4 0.3 hypothetical protein compare
RALBFv3_RS05175 +0.4 0.6 DUF1255 domain-containing protein compare
RALBFv3_RS14245 +0.4 1.6 ABC transporter permease compare
RALBFv3_RS15695 +0.4 2.0 MFS transporter compare
RALBFv3_RS01195 +0.4 1.3 BolA family transcriptional regulator compare
RALBFv3_RS08525 +0.4 1.3 hypothetical protein compare
RALBFv3_RS08720 +0.4 3.4 branched-chain amino acid ABC transporter substrate-binding protein compare
RALBFv3_RS06050 +0.4 2.3 hypothetical protein compare
RALBFv3_RS06210 +0.4 0.8 NUDIX domain-containing protein compare
RALBFv3_RS13100 +0.4 1.8 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
RALBFv3_RS18875 +0.4 1.3 NAD(P)/FAD-dependent oxidoreductase compare
RALBFv3_RS06905 +0.4 1.3 Plasmid pENH91 DNA, SacI-KpnI region containing chlorocatechol degradative operon compare
RALBFv3_RS09070 +0.4 2.0 hypothetical protein compare
RALBFv3_RS01120 +0.4 0.7 acetyl-CoA acetyltransferase compare
RALBFv3_RS07015 +0.4 1.7 ATP-binding protein compare
RALBFv3_RS23180 +0.4 2.1 LysR family transcriptional regulator compare
RALBFv3_RS15495 +0.4 0.6 hypothetical protein compare
RALBFv3_RS23790 +0.4 2.5 hypothetical protein compare
RALBFv3_RS23315 +0.4 3.1 sigma-54-dependent Fis family transcriptional regulator compare
RALBFv3_RS15455 +0.4 1.0 5-dehydro-2-deoxygluconokinase compare
RALBFv3_RS13875 +0.4 1.3 AsnC family transcriptional regulator compare
RALBFv3_RS17570 +0.4 1.9 DUF1304 domain-containing protein compare
RALBFv3_RS02380 +0.4 1.8 alkylhydroperoxidase compare
RALBFv3_RS03465 +0.4 1.3 DUF4019 domain-containing protein compare
RALBFv3_RS21730 +0.4 2.4 flagellar basal body rod modification protein FlgD compare
RALBFv3_RS11555 +0.4 1.5 amino acid ABC transporter substrate-binding protein compare
RALBFv3_RS02340 +0.4 0.8 LysR family transcriptional regulator compare
RALBFv3_RS00225 +0.4 1.8 glutathione ABC transporter ATP-binding protein compare
RALBFv3_RS02455 +0.4 0.6 membrane protein compare
RALBFv3_RS19925 +0.4 1.4 hypothetical protein compare
RALBFv3_RS01145 +0.4 2.2 exo-poly-galacturonase signal peptide protein compare
RALBFv3_RS18155 +0.4 0.6 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
RALBFv3_RS10910 +0.4 0.6 glutaredoxin 3 compare
RALBFv3_RS21275 +0.4 0.7 hypothetical protein compare
RALBFv3_RS15515 +0.3 1.0 competence/damage-inducible protein A compare
RALBFv3_RS09230 +0.3 1.8 DNA-binding response regulator compare
RALBFv3_RS06095 +0.3 0.7 hypothetical protein compare
RALBFv3_RS09820 +0.3 1.1 hypothetical protein compare
RALBFv3_RS02040 +0.3 0.7 DUF2892 domain-containing protein compare
RALBFv3_RS15355 +0.3 0.8 NAD-dependent deacylase compare
RALBFv3_RS20080 +0.3 1.5 hypothetical protein compare
RALBFv3_RS11775 +0.3 1.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
RALBFv3_RS02130 +0.3 1.6 phosphate transport system regulatory protein PhoU compare
RALBFv3_RS06470 +0.3 0.6 Co2+/Mg2+ efflux protein ApaG compare
RALBFv3_RS01465 +0.3 2.0 cystathionine beta-lyase compare
RALBFv3_RS18430 +0.3 1.1 integrase compare
RALBFv3_RS16505 +0.3 2.0 hemagglutinin compare
RALBFv3_RS07240 +0.3 2.3 DUF2300 domain-containing protein compare
RALBFv3_RS15815 +0.3 0.9 hypothetical protein compare
RALBFv3_RS07460 +0.3 1.7 MipA/OmpV family protein compare
RALBFv3_RS20455 +0.3 1.7 lipopolysaccharide heptosyltransferase I compare
RALBFv3_RS00150 +0.3 2.0 isocitrate lyase compare
RALBFv3_RS14560 +0.3 1.7 histidine kinase compare
RALBFv3_RS06525 +0.3 2.2 FUSC family protein compare
RALBFv3_RS11190 +0.3 2.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
RALBFv3_RS15630 +0.3 1.4 cytochrome-c oxidase, cbb3-type subunit III compare
RALBFv3_RS22340 +0.3 0.8 SAM-dependent methyltransferase compare
RALBFv3_RS24590 +0.3 0.5 hypothetical protein compare
RALBFv3_RS09640 +0.3 2.2 GTP-binding protein compare
RALBFv3_RS14990 +0.3 1.6 peptidyl-prolyl cis-trans isomerase compare
RALBFv3_RS14945 +0.3 1.7 methyl-accepting chemotaxis protein compare
RALBFv3_RS10370 +0.3 1.0 3-hydroxybutyryl-CoA dehydrogenase compare
RALBFv3_RS00980 +0.3 1.1 ABC transporter permease compare
RALBFv3_RS10360 +0.3 2.6 hypothetical protein compare
RALBFv3_RS13190 +0.3 2.7 tripartite tricarboxylate transporter permease compare
RALBFv3_RS11410 +0.3 1.5 membrane protein compare
RALBFv3_RS22865 +0.3 2.7 DUF3488 domain-containing protein compare
RALBFv3_RS01175 +0.3 2.3 long-chain-fatty-acid--CoA ligase compare
RALBFv3_RS14105 +0.3 1.2 EamA/RhaT family transporter compare
RALBFv3_RS21575 +0.3 2.3 flagellum-specific ATP synthase FliI compare
RALBFv3_RS02680 +0.3 0.5 hypothetical protein compare
RALBFv3_RS06185 +0.3 2.3 type II secretion system F family protein compare
RALBFv3_RS18640 +0.3 1.0 IS5/IS1182 family transposase compare
RALBFv3_RS15570 +0.3 1.5 sn-glycerol-3-phosphate import ATP-binding protein UgpC compare
RALBFv3_RS01590 +0.3 2.0 arginyltransferase compare
RALBFv3_RS22945 +0.3 1.6 GNAT family N-acetyltransferase compare
RALBFv3_RS14860 +0.3 1.1 NAD(P)/FAD-dependent oxidoreductase compare


Specific Phenotypes

None in this experiment

For Ralstonia solanacearum IBSBF1503 in stress experiments

For stress Ralstonia_antibiotic_mix across organisms