Experiment set15S234 for Phocaeicola vulgatus CL09T03C04

Compare to:

Glyceraldehye-3-phosphate 1 mM phosphorus source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS17935 -5.4 -8.2 glycosyltransferase compare
HMPREF1058_RS04065 -5.2 -2.5 VWA domain-containing protein compare
HMPREF1058_RS17940 -5.2 -6.2 alpha-amylase compare
HMPREF1058_RS07170 -4.9 -12.9 tryptophan synthase subunit beta compare
HMPREF1058_RS17965 -4.8 -1.9 DUF452 family protein compare
HMPREF1058_RS17155 -4.7 -3.2 dCMP deaminase family protein compare
HMPREF1058_RS15870 -4.6 -10.0 ATP phosphoribosyltransferase compare
HMPREF1058_RS06170 -4.6 -8.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS03910 -4.5 -7.5 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS04300 -4.5 -8.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS16760 -4.5 -5.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS14790 -4.3 -16.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS16835 -4.3 -12.7 ketol-acid reductoisomerase compare
HMPREF1058_RS08025 -4.2 -11.6 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS03510 -4.2 -7.5 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS03970 -4.1 -2.8 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS14785 -4.1 -9.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS07190 -4.1 -5.6 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS06195 -4.1 -11.1 diaminopimelate decarboxylase compare
HMPREF1058_RS16815 -4.0 -16.1 dihydroxy-acid dehydratase compare
HMPREF1058_RS11730 -3.9 -2.4 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS05780 -3.9 -12.3 PD40 domain-containing protein compare
HMPREF1058_RS16755 -3.9 -4.2 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS02220 -3.9 -8.8 branched-chain amino acid aminotransferase compare
HMPREF1058_RS14590 -3.9 -3.8 AraC family transcriptional regulator compare
HMPREF1058_RS15665 -3.9 -8.2 MFS transporter compare
HMPREF1058_RS06175 -3.9 -6.8 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS03800 -3.9 -9.2 serine hydroxymethyltransferase compare
HMPREF1058_RS17885 -3.8 -18.8 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS06180 -3.8 -6.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS04045 -3.8 -6.3 tetratricopeptide repeat protein compare
HMPREF1058_RS14560 -3.8 -12.5 2-isopropylmalate synthase compare
HMPREF1058_RS14725 -3.8 -11.9 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS06225 -3.8 -4.9 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS12105 -3.7 -5.2 shikimate kinase compare
HMPREF1058_RS15875 -3.7 -9.8 histidinol dehydrogenase compare
HMPREF1058_RS07200 -3.7 -8.6 tryptophan synthase subunit alpha compare
HMPREF1058_RS05140 -3.7 -6.2 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS11270 -3.7 -12.3 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS15395 -3.7 -2.5 dihydroorotase compare
HMPREF1058_RS18265 -3.7 -6.4 aspartate 1-decarboxylase compare
HMPREF1058_RS13795 -3.7 -13.6 DUF4954 family protein compare
HMPREF1058_RS14770 -3.7 -9.1 prephenate dehydrogenase compare
HMPREF1058_RS03000 -3.6 -12.2 IMP dehydrogenase compare
HMPREF1058_RS04160 -3.6 -4.0 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS02115 -3.6 -11.6 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS14795 -3.6 -7.3 prephenate dehydratase compare
HMPREF1058_RS06190 -3.6 -8.6 aspartate kinase compare
HMPREF1058_RS07955 -3.5 -16.2 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS15880 -3.5 -12.6 histidinol-phosphate transaminase compare
HMPREF1058_RS04050 -3.5 -5.4 protein BatD compare
HMPREF1058_RS08850 -3.5 -11.4 N-acetyltransferase compare
HMPREF1058_RS07195 -3.5 -4.5 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS16820 -3.5 -11.5 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS14565 -3.5 -12.9 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS14730 -3.5 -10.9 threonine synthase compare
HMPREF1058_RS08845 -3.4 -11.1 argininosuccinate synthase compare
HMPREF1058_RS04075 -3.4 -3.3 DUF58 domain-containing protein compare
HMPREF1058_RS10255 -3.4 -4.1 hypothetical protein compare
HMPREF1058_RS09585 -3.4 -16.1 argininosuccinate lyase compare
HMPREF1058_RS14720 -3.4 -14.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS04250 -3.4 -8.8 sensor histidine kinase compare
HMPREF1058_RS08650 -3.4 -10.2 glutamate 5-kinase compare
HMPREF1058_RS15075 -3.4 -13.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS15885 -3.4 -8.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS14610 -3.3 -16.9 adenylosuccinate synthase compare
HMPREF1058_RS16825 -3.3 -10.3 acetolactate synthase small subunit compare
HMPREF1058_RS14555 -3.3 -3.0 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS14550 -3.3 -9.9 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS00560 -3.3 -4.6 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS14920 -3.3 -11.2 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS10075 -3.3 -10.9 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS04070 -3.2 -4.9 hypothetical protein compare
HMPREF1058_RS07185 -3.2 -9.0 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS10820 -3.2 -13.7 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS08325 -3.2 -7.3 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS17035 -3.2 -11.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS08840 -3.2 -10.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS04295 -3.2 -5.8 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS12780 -3.2 -9.6 M20 family metallo-hydrolase compare
HMPREF1058_RS08830 -3.1 -7.0 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS10080 -3.1 -13.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS20985 -3.1 -2.5 tyrosine-type recombinase/integrase compare
HMPREF1058_RS08640 -3.1 -4.6 acetylornithine carbamoyltransferase compare
HMPREF1058_RS11205 -3.1 -2.4 radical SAM protein compare
HMPREF1058_RS06560 -3.1 -7.5 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS07175 -3.1 -10.1 anthranilate synthase component I family protein compare
HMPREF1058_RS09240 -3.1 -11.1 type I methionyl aminopeptidase compare
HMPREF1058_RS06565 -3.1 -5.3 phosphate signaling complex protein PhoU compare
HMPREF1058_RS08645 -3.1 -12.2 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS21070 -3.0 -4.8 potassium-transporting ATPase subunit F compare
HMPREF1058_RS20355 -3.0 -4.0 hypothetical protein compare
HMPREF1058_RS14545 -3.0 -10.8 2-isopropylmalate synthase compare
HMPREF1058_RS02170 -3.0 -7.8 hypothetical protein compare
HMPREF1058_RS00710 -3.0 -6.1 hypoxanthine phosphoribosyltransferase compare
HMPREF1058_RS14005 -3.0 -5.6 3-dehydroquinate synthase compare
HMPREF1058_RS04080 -2.9 -4.9 AAA family ATPase compare
HMPREF1058_RS16750 -2.9 -2.8 shikimate dehydrogenase compare
HMPREF1058_RS17955 -2.9 -7.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1058_RS08855 -2.9 -9.9 arginine repressor compare
HMPREF1058_RS07635 -2.9 -4.5 50S ribosomal protein L9 compare
HMPREF1058_RS12505 -2.9 -3.4 RNA polymerase factor sigma-54 compare
HMPREF1058_RS10995 -2.8 -9.5 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS08535 -2.8 -2.7 elongation factor P compare
HMPREF1058_RS16730 -2.8 -4.3 chorismate synthase compare
HMPREF1058_RS00590 -2.8 -4.9 hypothetical protein compare
HMPREF1058_RS04035 -2.8 -2.6 hypothetical protein compare
HMPREF1058_RS15375 -2.8 -1.7 DUF4369 domain-containing protein compare
HMPREF1058_RS02755 -2.8 -3.8 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS08835 -2.8 -7.6 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS14505 -2.8 -4.2 mechanosensitive ion channel compare
HMPREF1058_RS05145 -2.7 -10.8 ATP-binding protein compare
HMPREF1058_RS01705 -2.7 -2.3 Na+/H+ antiporter NhaC family protein compare
HMPREF1058_RS17985 -2.6 -9.9 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS04170 -2.6 -9.0 potassium-transporting ATPase subunit KdpA compare
HMPREF1058_RS12115 -2.6 -8.1 acetylglutamate kinase compare
HMPREF1058_RS02750 -2.6 -3.6 BamA/TamA family outer membrane protein compare
HMPREF1058_RS16845 -2.6 -5.7 SurA N-terminal domain-containing protein compare
HMPREF1058_RS11490 -2.6 -4.3 redox-regulated ATPase YchF compare
HMPREF1058_RS17975 -2.5 -9.6 ATP-dependent dethiobiotin synthetase BioD compare
HMPREF1058_RS03535 -2.5 -1.7 UvrD-helicase domain-containing protein compare
HMPREF1058_RS0119830 -2.5 -1.2 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS03075 -2.4 -5.5 DNA helicase RecQ compare
HMPREF1058_RS07180 -2.4 -5.8 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS15915 -2.4 -3.7 OmpH family outer membrane protein compare
HMPREF1058_RS13790 -2.4 -11.1 GTPase HflX compare
HMPREF1058_RS01745 -2.4 -5.5 PorT family protein compare
HMPREF1058_RS09675 -2.3 -4.6 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS14490 -2.3 -10.4 S9 family peptidase compare
HMPREF1058_RS10840 -2.2 -2.9 hypothetical protein compare
HMPREF1058_RS17970 -2.2 -6.7 malonyl-ACP O-methyltransferase BioC compare
HMPREF1058_RS17950 -2.2 -6.7 biotin synthase BioB compare
HMPREF1058_RS17060 -2.2 -6.9 HAD family hydrolase compare
HMPREF1058_RS17050 -2.2 -6.5 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS17960 -2.1 -7.7 8-amino-7-oxononanoate synthase compare
HMPREF1058_RS03135 -2.1 -1.3 5S ribosomal RNA compare
HMPREF1058_RS13970 -2.1 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS09610 -2.1 -6.9 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS17130 -2.1 -2.3 tetratricopeptide repeat protein compare
HMPREF1058_RS10720 -2.1 -5.1 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS00700 -2.1 -7.8 DUF4831 family protein compare
HMPREF1058_RS06160 -2.0 -5.6 formyltetrahydrofolate deformylase compare
HMPREF1058_RS03245 -2.0 -1.9 thiamine phosphate synthase compare
HMPREF1058_RS04180 -2.0 -6.1 K(+)-transporting ATPase subunit C compare
HMPREF1058_RS17945 -2.0 -4.7 hypothetical protein compare
HMPREF1058_RS17205 -2.0 -2.6 DUF4199 domain-containing protein compare
HMPREF1058_RS06080 -1.9 -6.2 glutamine synthetase III compare
HMPREF1058_RS15975 -1.9 -6.1 saccharopine dehydrogenase family protein compare
HMPREF1058_RS16240 -1.9 -2.1 o-succinylbenzoate synthase compare
HMPREF1058_RS07625 -1.9 -2.0 hypothetical protein compare
HMPREF1058_RS11890 -1.9 -4.3 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS03530 -1.9 -1.3 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS04370 -1.9 -5.1 agmatine deiminase family protein compare
HMPREF1058_RS12490 -1.9 -2.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS12110 -1.9 -7.6 biosynthetic arginine decarboxylase compare
HMPREF1058_RS07075 -1.9 -5.1 SPOR domain-containing protein compare
HMPREF1058_RS06600 -1.9 -4.0 DedA family protein compare
HMPREF1058_RS17025 -1.9 -6.4 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
HMPREF1058_RS15565 -1.9 -13.3 hypothetical protein compare
HMPREF1058_RS13735 -1.9 -4.4 hypothetical protein compare
HMPREF1058_RS11535 -1.9 -5.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS03085 -1.8 -2.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS15855 -1.8 -7.4 uridine kinase compare
HMPREF1058_RS15710 -1.8 -8.0 cytidine deaminase compare
HMPREF1058_RS05880 -1.8 -2.4 DUF5063 domain-containing protein compare
HMPREF1058_RS10270 -1.8 -2.4 hypothetical protein compare
HMPREF1058_RS11040 -1.8 -7.2 polysaccharide deacetylase family protein compare
HMPREF1058_RS17040 -1.7 -5.7 NTP transferase domain-containing protein compare
HMPREF1058_RS05930 -1.7 -6.9 MFS transporter compare
HMPREF1058_RS11215 -1.7 -2.6 DUF4294 domain-containing protein compare
HMPREF1058_RS04175 -1.7 -8.8 potassium-transporting ATPase subunit KdpB compare
HMPREF1058_RS15380 -1.7 -6.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS10940 -1.7 -9.3 U32 family peptidase compare
HMPREF1058_RS15660 -1.7 -7.5 galactokinase compare
HMPREF1058_RS07040 -1.7 -8.1 tetratricopeptide repeat protein compare
HMPREF1058_RS12455 -1.7 -1.5 dUTP diphosphatase compare
HMPREF1058_RS12070 -1.6 -4.2 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS14120 -1.6 -7.9 DUF349 domain-containing protein compare
HMPREF1058_RS09680 -1.6 -3.0 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS18400 -1.6 -5.1 RidA family protein compare
HMPREF1058_RS12735 -1.6 -6.7 HDIG domain-containing protein compare
HMPREF1058_RS06345 -1.6 -6.1 Fe-S cluster domain-containing protein compare
HMPREF1058_RS09685 -1.6 -7.9 tetratricopeptide repeat protein compare
HMPREF1058_RS0119615 -1.6 -1.9 hypothetical protein compare
HMPREF1058_RS01650 -1.6 -7.2 hypothetical protein compare
HMPREF1058_RS09590 -1.6 -4.7 hypothetical protein compare
HMPREF1058_RS02800 -1.6 -5.2 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS20490 -1.6 -2.6 RNA polymerase subunit sigma-70 compare
HMPREF1058_RS16625 -1.6 -6.8 hypothetical protein compare
HMPREF1058_RS07440 -1.5 -4.5 aspartate--ammonia ligase compare
HMPREF1058_RS06335 -1.5 -7.5 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS08295 -1.5 -4.0 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS08060 -1.5 -4.2 hypothetical protein compare
HMPREF1058_RS01995 -1.5 -2.3 hypothetical protein compare
HMPREF1058_RS16060 -1.5 -1.9 5S ribosomal RNA compare
HMPREF1058_RS12795 -1.5 -3.5 CYTH domain-containing protein compare
HMPREF1058_RS09485 -1.5 -8.0 PDZ domain-containing protein compare
HMPREF1058_RS02135 -1.4 -8.6 phosphoenolpyruvate synthase compare
HMPREF1058_RS16245 -1.4 -3.2 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
HMPREF1058_RS05540 -1.4 -2.1 helix-turn-helix transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in phosphorus source experiments

For phosphorus source Glyceraldehye-3-phosphate across organisms