Experiment set15S231 for Phocaeicola vulgatus CL09T03C04

Compare to:

2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS11730 -5.7 -2.5 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS17935 -5.4 -7.4 glycosyltransferase compare
HMPREF1058_RS16760 -4.9 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS14785 -4.8 -8.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS17940 -4.6 -7.0 alpha-amylase compare
HMPREF1058_RS15665 -4.4 -6.8 MFS transporter compare
HMPREF1058_RS11205 -4.3 -2.2 radical SAM protein compare
HMPREF1058_RS03910 -4.3 -6.6 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS08535 -4.3 -2.7 elongation factor P compare
HMPREF1058_RS04160 -4.3 -3.4 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS11490 -4.3 -4.1 redox-regulated ATPase YchF compare
HMPREF1058_RS03510 -4.3 -6.5 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS07635 -4.3 -4.2 50S ribosomal protein L9 compare
HMPREF1058_RS03245 -4.2 -2.2 thiamine phosphate synthase compare
HMPREF1058_RS17535 -4.1 -1.5 IS21-like element helper ATPase IstB compare
HMPREF1058_RS04300 -4.0 -8.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS03800 -3.8 -10.7 serine hydroxymethyltransferase compare
HMPREF1058_RS14005 -3.8 -2.6 3-dehydroquinate synthase compare
HMPREF1058_RS06170 -3.7 -5.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS04065 -3.7 -2.2 VWA domain-containing protein compare
HMPREF1058_RS04250 -3.7 -11.6 sensor histidine kinase compare
HMPREF1058_RS08640 -3.6 -3.1 acetylornithine carbamoyltransferase compare
HMPREF1058_RS15880 -3.6 -12.6 histidinol-phosphate transaminase compare
HMPREF1058_RS08325 -3.6 -4.3 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS17885 -3.6 -18.4 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS08845 -3.6 -12.2 argininosuccinate synthase compare
HMPREF1058_RS07170 -3.6 -11.6 tryptophan synthase subunit beta compare
HMPREF1058_RS16820 -3.6 -13.4 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS12115 -3.6 -9.6 acetylglutamate kinase compare
HMPREF1058_RS07175 -3.6 -13.4 anthranilate synthase component I family protein compare
HMPREF1058_RS15885 -3.5 -8.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS08830 -3.5 -8.3 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS15395 -3.5 -2.4 dihydroorotase compare
HMPREF1058_RS11270 -3.5 -13.6 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS19210 -3.5 -2.5 hypothetical protein compare
HMPREF1058_RS08025 -3.5 -8.2 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS14720 -3.4 -14.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS17035 -3.4 -10.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS05140 -3.4 -6.9 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS07670 -3.4 -3.0 HAMP domain-containing histidine kinase compare
HMPREF1058_RS07195 -3.4 -4.2 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS16835 -3.4 -10.6 ketol-acid reductoisomerase compare
HMPREF1058_RS02220 -3.4 -6.6 branched-chain amino acid aminotransferase compare
HMPREF1058_RS07190 -3.4 -6.4 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS00560 -3.4 -4.4 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS14545 -3.4 -10.1 2-isopropylmalate synthase compare
HMPREF1058_RS07185 -3.4 -9.8 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS14790 -3.3 -11.9 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS06175 -3.3 -5.0 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS08850 -3.3 -7.1 N-acetyltransferase compare
HMPREF1058_RS11510 -3.3 -12.7 deoxyribose-phosphate aldolase compare
HMPREF1058_RS07200 -3.3 -9.6 tryptophan synthase subunit alpha compare
HMPREF1058_RS07955 -3.3 -17.2 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS15875 -3.3 -10.6 histidinol dehydrogenase compare
HMPREF1058_RS08645 -3.3 -9.9 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS14550 -3.3 -12.7 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS14725 -3.2 -9.3 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS14610 -3.2 -16.9 adenylosuccinate synthase compare
HMPREF1058_RS04045 -3.2 -6.2 tetratricopeptide repeat protein compare
HMPREF1058_RS14730 -3.2 -12.1 threonine synthase compare
HMPREF1058_RS16825 -3.2 -10.2 acetolactate synthase small subunit compare
HMPREF1058_RS17130 -3.2 -2.8 tetratricopeptide repeat protein compare
HMPREF1058_RS13795 -3.2 -13.7 DUF4954 family protein compare
HMPREF1058_RS14770 -3.2 -8.2 prephenate dehydrogenase compare
HMPREF1058_RS14560 -3.2 -11.8 2-isopropylmalate synthase compare
HMPREF1058_RS06565 -3.2 -4.0 phosphate signaling complex protein PhoU compare
HMPREF1058_RS10995 -3.2 -9.3 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS09445 -3.1 -1.8 tyrosine-type recombinase/integrase compare
HMPREF1058_RS16730 -3.1 -4.5 chorismate synthase compare
HMPREF1058_RS16845 -3.1 -3.7 SurA N-terminal domain-containing protein compare
HMPREF1058_RS05145 -3.1 -8.9 ATP-binding protein compare
HMPREF1058_RS15075 -3.1 -13.7 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS00710 -3.1 -6.2 hypoxanthine phosphoribosyltransferase compare
HMPREF1058_RS14565 -3.1 -13.4 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS14920 -3.1 -10.9 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS04080 -3.1 -4.7 AAA family ATPase compare
HMPREF1058_RS06195 -3.1 -9.2 diaminopimelate decarboxylase compare
HMPREF1058_RS04295 -3.1 -5.7 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS15870 -3.1 -10.4 ATP phosphoribosyltransferase compare
HMPREF1058_RS03075 -3.1 -6.8 DNA helicase RecQ compare
HMPREF1058_RS06190 -3.0 -8.5 aspartate kinase compare
HMPREF1058_RS12105 -3.0 -4.9 shikimate kinase compare
HMPREF1058_RS09675 -3.0 -3.7 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS14795 -3.0 -6.7 prephenate dehydratase compare
HMPREF1058_RS08840 -3.0 -9.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS10820 -3.0 -12.8 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS06180 -3.0 -6.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS02170 -3.0 -9.4 hypothetical protein compare
HMPREF1058_RS12780 -3.0 -9.8 M20 family metallo-hydrolase compare
HMPREF1058_RS13970 -3.0 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS08650 -3.0 -9.1 glutamate 5-kinase compare
HMPREF1058_RS11535 -2.9 -8.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS12490 -2.9 -2.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS09585 -2.9 -14.5 argininosuccinate lyase compare
HMPREF1058_RS03000 -2.8 -8.4 IMP dehydrogenase compare
HMPREF1058_RS16815 -2.8 -13.3 dihydroxy-acid dehydratase compare
HMPREF1058_RS06880 -2.8 -13.1 amidophosphoribosyltransferase compare
HMPREF1058_RS10075 -2.8 -9.1 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS05780 -2.8 -11.1 PD40 domain-containing protein compare
HMPREF1058_RS16750 -2.8 -2.6 shikimate dehydrogenase compare
HMPREF1058_RS10080 -2.8 -15.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS18265 -2.8 -4.2 aspartate 1-decarboxylase compare
HMPREF1058_RS08835 -2.8 -6.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS14555 -2.7 -3.0 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS06345 -2.7 -6.2 Fe-S cluster domain-containing protein compare
HMPREF1058_RS04075 -2.7 -3.0 DUF58 domain-containing protein compare
HMPREF1058_RS14505 -2.7 -3.2 mechanosensitive ion channel compare
HMPREF1058_RS15710 -2.6 -8.7 cytidine deaminase compare
HMPREF1058_RS08855 -2.6 -8.0 arginine repressor compare
HMPREF1058_RS15375 -2.6 -1.4 DUF4369 domain-containing protein compare
HMPREF1058_RS01745 -2.6 -7.6 PorT family protein compare
HMPREF1058_RS03085 -2.6 -2.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS17950 -2.6 -5.0 biotin synthase BioB compare
HMPREF1058_RS06080 -2.6 -7.8 glutamine synthetase III compare
HMPREF1058_RS12505 -2.6 -3.5 RNA polymerase factor sigma-54 compare
HMPREF1058_RS16755 -2.6 -3.0 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS01705 -2.6 -2.0 Na+/H+ antiporter NhaC family protein compare
HMPREF1058_RS02115 -2.5 -8.6 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS07075 -2.5 -7.3 SPOR domain-containing protein compare
HMPREF1058_RS00595 -2.5 -2.9 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS04050 -2.5 -6.4 protein BatD compare
HMPREF1058_RS06600 -2.5 -4.6 DedA family protein compare
HMPREF1058_RS17975 -2.4 -9.5 ATP-dependent dethiobiotin synthetase BioD compare
HMPREF1058_RS10255 -2.4 -2.2 hypothetical protein compare
HMPREF1058_RS04180 -2.4 -5.9 K(+)-transporting ATPase subunit C compare
HMPREF1058_RS14590 -2.4 -3.2 AraC family transcriptional regulator compare
HMPREF1058_RS01800 -2.4 -3.3 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS17985 -2.4 -10.2 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS06560 -2.4 -7.7 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS17205 -2.3 -2.2 DUF4199 domain-containing protein compare
HMPREF1058_RS00700 -2.3 -7.8 DUF4831 family protein compare
HMPREF1058_RS04175 -2.3 -8.7 potassium-transporting ATPase subunit KdpB compare
HMPREF1058_RS04070 -2.3 -4.3 hypothetical protein compare
HMPREF1058_RS03295 -2.3 -1.7 sulfur carrier protein ThiS compare
HMPREF1058_RS00590 -2.3 -4.5 hypothetical protein compare
HMPREF1058_RS10720 -2.3 -7.0 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS17970 -2.3 -5.3 malonyl-ACP O-methyltransferase BioC compare
HMPREF1058_RS07440 -2.2 -6.0 aspartate--ammonia ligase compare
HMPREF1058_RS02750 -2.2 -3.9 BamA/TamA family outer membrane protein compare
HMPREF1058_RS09240 -2.2 -6.9 type I methionyl aminopeptidase compare
HMPREF1058_RS15380 -2.2 -7.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS15920 -2.1 -1.5 hypothetical protein compare
HMPREF1058_RS17960 -2.1 -8.6 8-amino-7-oxononanoate synthase compare
HMPREF1058_RS17050 -2.1 -6.6 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS04170 -2.1 -6.6 potassium-transporting ATPase subunit KdpA compare
HMPREF1058_RS03970 -2.0 -2.4 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS06160 -2.0 -7.3 formyltetrahydrofolate deformylase compare
HMPREF1058_RS14490 -2.0 -9.7 S9 family peptidase compare
HMPREF1058_RS17955 -2.0 -5.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1058_RS07180 -2.0 -3.5 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS12735 -2.0 -7.4 HDIG domain-containing protein compare
HMPREF1058_RS17045 -2.0 -4.0 hypothetical protein compare
HMPREF1058_RS03535 -2.0 -1.5 UvrD-helicase domain-containing protein compare
HMPREF1058_RS10940 -2.0 -10.4 U32 family peptidase compare
HMPREF1058_RS02755 -1.9 -4.5 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS12110 -1.9 -7.7 biosynthetic arginine decarboxylase compare
HMPREF1058_RS06225 -1.9 -2.6 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS17945 -1.9 -6.1 hypothetical protein compare
HMPREF1058_RS05880 -1.9 -2.4 DUF5063 domain-containing protein compare
HMPREF1058_RS17080 -1.9 -1.7 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS15855 -1.8 -7.6 uridine kinase compare
HMPREF1058_RS17965 -1.8 -1.6 DUF452 family protein compare
HMPREF1058_RS17150 -1.8 -10.3 S41 family peptidase compare
HMPREF1058_RS07455 -1.8 -3.9 HDIG domain-containing protein compare
HMPREF1058_RS10920 -1.8 -2.7 viroplasmin family protein compare
HMPREF1058_RS17060 -1.8 -5.5 HAD family hydrolase compare
HMPREF1058_RS18400 -1.8 -3.3 RidA family protein compare
HMPREF1058_RS03275 -1.8 -1.8 hypothetical protein compare
HMPREF1058_RS13790 -1.8 -7.7 GTPase HflX compare
HMPREF1058_RS04015 -1.8 -5.9 ATP-dependent Clp protease ATP-binding subunit compare
HMPREF1058_RS07625 -1.8 -1.7 hypothetical protein compare
HMPREF1058_RS09610 -1.7 -5.8 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS09590 -1.7 -6.0 hypothetical protein compare
HMPREF1058_RS05755 -1.7 -5.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
HMPREF1058_RS12525 -1.7 -4.1 Na/Pi cotransporter family protein compare
HMPREF1058_RS17025 -1.7 -7.6 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
HMPREF1058_RS11215 -1.7 -2.2 DUF4294 domain-containing protein compare
HMPREF1058_RS20745 -1.7 -2.8 hypothetical protein compare
HMPREF1058_RS11040 -1.7 -5.3 polysaccharide deacetylase family protein compare
HMPREF1058_RS16070 -1.7 -4.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS03130 -1.7 -4.6 DUF177 domain-containing protein compare
HMPREF1058_RS03530 -1.7 -1.1 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS07205 -1.7 -5.9 type I asparaginase compare
HMPREF1058_RS02910 -1.6 -12.6 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS13655 -1.6 -8.3 cardiolipin synthase compare
HMPREF1058_RS02135 -1.6 -10.0 phosphoenolpyruvate synthase compare
HMPREF1058_RS14930 -1.6 -8.2 AraC family transcriptional regulator compare
HMPREF1058_RS21070 -1.6 -1.8 potassium-transporting ATPase subunit F compare
HMPREF1058_RS01820 -1.6 -1.5 hypothetical protein compare
HMPREF1058_RS12520 -1.6 -8.0 nucleoside kinase compare
HMPREF1058_RS16065 -1.6 -3.9 DUF1016 family protein compare
HMPREF1058_RS04370 -1.6 -4.0 agmatine deiminase family protein compare
HMPREF1058_RS11890 -1.5 -3.7 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS07040 -1.5 -7.1 tetratricopeptide repeat protein compare
HMPREF1058_RS04730 -1.5 -3.5 YbbR-like domain-containing protein compare
HMPREF1058_RS14120 -1.5 -7.9 DUF349 domain-containing protein compare
HMPREF1058_RS14465 -1.5 -2.8 enoyl-ACP reductase compare
HMPREF1058_RS02990 -1.5 -3.8 peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS07615 -1.5 -5.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB compare
HMPREF1058_RS10840 -1.5 -1.7 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For phosphorus source 2-Deoxycitidine 5' monophosphate in Phocaeicola vulgatus CL09T03C04

For phosphorus source 2-Deoxycitidine 5' monophosphate across organisms