Experiment set15S231 for Phocaeicola vulgatus CL09T03C04
2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Group: phosphorus sourceMedia: Varel_Bryant_medium_Glucose_minusP + 2-Deoxycitidine 5' monophosphate (1 mM)
Culturing: Bvulgatus_CL09T03C04_ML5, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya on 7/3/25
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, 20 mM D-Glucose, Mineral 3B solution minus phosphorus (6.6 mM Potassium Chloride, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 1 genes in this experiment
For phosphorus source 2-Deoxycitidine 5' monophosphate in Phocaeicola vulgatus CL09T03C04
For phosphorus source 2-Deoxycitidine 5' monophosphate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Deoxyribose and Deoxynucleoside Catabolism | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| 2-deoxy-D-ribose degradation I | 3 | 2 | 1 |
| 2-deoxy-α-D-ribose 1-phosphate degradation | 3 | 1 | 1 |
| superpathway of pyrimidine deoxyribonucleosides degradation | 6 | 3 | 1 |
| superpathway of purine deoxyribonucleosides degradation | 7 | 4 | 1 |