Experiment set15IT095 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Citrulline

200 most detrimental genes:

  gene name fitness t score description  
AO353_03420 +2.9 9.3 phosphogluconate dehydratase compare
AO353_26390 +2.8 4.7 glyoxalase compare
AO353_01055 +2.7 25.6 AraC family transcriptional regulator compare
AO353_01060 +2.7 21.7 3-ketoacyl-ACP reductase compare
AO353_21830 +2.6 24.2 chemotaxis protein CheY compare
AO353_19340 +2.6 23.5 amino acid ABC transporter substrate-binding protein compare
AO353_11945 +2.5 2.2 4-oxalocrotonate tautomerase compare
AO353_04190 +2.5 4.5 glycerol-3-phosphate dehydrogenase compare
AO353_01065 +2.5 19.6 acetyl-CoA acetyltransferase compare
AO353_02735 +2.5 23.6 chemotaxis protein CheY compare
AO353_16615 +2.4 17.6 RNA polymerase sigma factor RpoS compare
AO353_01070 +2.4 22.8 poly(R)-hydroxyalkanoic acid synthase compare
AO353_00660 +2.4 6.6 transcriptional regulator compare
AO353_20865 +2.2 4.6 cold-shock protein compare
AO353_22920 +2.1 6.0 GntR family transcriptional regulator compare
AO353_16425 +2.0 2.1 Fe-S metabolism protein SufE compare
AO353_00635 +2.0 5.1 hypothetical protein compare
AO353_21620 +2.0 16.0 peptidylprolyl isomerase compare
AO353_06155 +2.0 11.7 copper-transporting ATPase compare
AO353_00900 +1.9 10.8 2-methylisocitrate lyase compare
AO353_06320 +1.9 7.2 AsnC family transcriptional regulator compare
AO353_22860 +1.9 11.5 cytochrome C oxidase Cbb3 compare
AO353_01810 +1.9 10.8 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_02465 +1.9 3.7 hypothetical protein compare
AO353_08775 +1.9 3.3 cell division protein ZapA compare
AO353_06585 +1.8 8.4 hypothetical protein compare
AO353_10945 +1.8 5.9 cytochrome C compare
AO353_18630 +1.7 11.0 beta-ketoacyl-ACP synthase compare
AO353_05150 +1.7 4.5 ABC transporter ATP-binding protein compare
AO353_10990 +1.7 9.2 glutamate:protein symporter compare
AO353_06160 +1.7 7.9 transcriptional regulator compare
AO353_21425 +1.7 5.2 hypothetical protein compare
AO353_18890 +1.7 5.1 cytochrome C compare
AO353_07325 +1.7 2.3 diadenosine tetraphosphatase compare
AO353_26115 +1.7 3.8 hypothetical protein compare
AO353_01045 +1.7 4.9 phasin compare
AO353_11155 +1.7 15.0 thioesterase compare
AO353_20300 +1.6 10.1 anti-sigma factor compare
AO353_00460 +1.6 3.2 TetR family transcriptional regulator compare
AO353_09135 +1.6 2.0 cytochrome C compare
AO353_21625 +1.6 2.5 Fe/S biogenesis protein NfuA compare
AO353_18600 +1.6 4.0 flagellar basal-body rod protein FlgG compare
AO353_17665 +1.5 7.0 glycine cleavage system protein R compare
AO353_05130 +1.5 1.8 anti-anti-sigma factor compare
AO353_00590 +1.5 6.5 cytochrome C oxidase Cbb3 compare
AO353_15290 +1.5 8.6 methyltransferase compare
AO353_11160 +1.5 9.5 GntR family transcriptional regulator compare
AO353_20095 +1.5 4.2 histidine kinase compare
AO353_15395 +1.5 4.8 transcriptional regulator compare
AO353_00600 +1.5 7.4 cytochrome C oxidase Cbb3 compare
AO353_20510 +1.5 1.4 amidase compare
AO353_08995 +1.4 9.3 chemotaxis protein CheY compare
AO353_00760 +1.4 2.7 hypothetical protein compare
AO353_26645 +1.4 5.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_03515 +1.4 1.8 cold-shock protein compare
AO353_00330 +1.4 7.3 hypothetical protein compare
AO353_25570 +1.3 7.9 glycosyltransferase compare
AO353_21465 +1.3 2.5 cation:proton antiporter compare
AO353_18575 +1.2 4.2 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
AO353_15285 +1.2 7.2 hypothetical protein compare
AO353_05135 +1.2 6.4 toluene tolerance protein compare
AO353_03635 +1.2 6.8 mechanosensitive ion channel protein MscS compare
AO353_18505 +1.2 1.8 translation initiation factor 2 compare
AO353_12870 +1.2 9.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_17475 +1.2 3.7 hypothetical protein compare
AO353_14460 +1.2 5.2 competence protein TfoX compare
AO353_03360 +1.2 5.6 glucose-6-phosphate dehydrogenase compare
AO353_24130 +1.2 3.1 hypothetical protein compare
AO353_04355 +1.2 1.9 homoserine dehydrogenase compare
AO353_25160 +1.2 2.8 ABC transporter substrate-binding protein compare
AO353_16380 +1.2 3.2 hypothetical protein compare
AO353_26630 +1.2 5.0 ArsR family transcriptional regulator compare
AO353_15465 +1.2 4.0 cytochrome C oxidase compare
AO353_15985 +1.2 5.9 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
AO353_03440 +1.2 3.4 glycerol-3-phosphate ABC transporter substrate-binding protein compare
AO353_20140 +1.1 3.1 hypothetical protein compare
AO353_17205 +1.1 1.5 beta-ketoadipyl CoA thiolase compare
AO353_00825 +1.1 2.4 porin compare
AO353_02620 +1.1 4.5 threonine-phosphate decarboxylase compare
AO353_00630 +1.1 3.4 (Fe-S)-binding protein compare
AO353_14885 +1.1 3.2 glutamine ABC transporter ATP-binding protein compare
AO353_08955 +1.1 4.6 transcriptional regulator compare
AO353_06775 +1.1 3.9 dTDP-4-dehydrorhamnose reductase compare
AO353_24765 +1.1 3.0 GCN5 family acetyltransferase compare
AO353_10500 +1.1 2.9 acetylornithine aminotransferase compare
AO353_03415 +1.1 3.8 glucokinase compare
AO353_18585 +1.1 5.9 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
AO353_00885 +1.1 3.4 3-methylitaconate isomerase compare
AO353_12135 +1.1 2.3 rRNA methylase compare
AO353_09275 +1.1 2.9 DNA-directed RNA polymerase subunit omega compare
AO353_17955 +1.1 4.9 MFS transporter compare
AO353_00905 +1.1 3.3 GntR family transcriptional regulator compare
AO353_20455 +1.0 2.8 HAD family hydrolase compare
AO353_27905 +1.0 3.8 N-formylglutamate amidohydrolase compare
AO353_13660 +1.0 5.8 tRNA-dihydrouridine synthase B compare
AO353_25015 +1.0 2.2 polyketide cyclase compare
AO353_25190 +1.0 5.9 amino acid transporter compare
AO353_28015 +1.0 1.9 hypothetical protein compare
AO353_18590 +1.0 5.7 AAA family ATPase compare
AO353_13870 +1.0 3.8 acyl dehydratase compare
AO353_02475 +1.0 4.2 hypothetical protein compare
AO353_05625 +1.0 1.3 transcription elongation factor GreA compare
AO353_20910 +1.0 4.0 MerR family transcriptional regulator compare
AO353_09945 +1.0 4.0 LysR family transcriptional regulator compare
AO353_05145 +1.0 3.5 ABC transporter permease compare
AO353_17935 +1.0 2.0 hypothetical protein compare
AO353_19025 +1.0 7.8 acetyltransferase compare
AO353_21430 +1.0 2.5 hypothetical protein compare
AO353_09250 +1.0 1.8 exodeoxyribonuclease III compare
AO353_19825 +1.0 5.3 shikimate dehydrogenase compare
AO353_28395 +1.0 3.4 haloacid dehalogenase compare
AO353_08215 +1.0 2.0 thiazole synthase compare
AO353_19040 +1.0 4.4 thioredoxin compare
AO353_11125 +1.0 2.7 5S ribosomal RNA compare
AO353_26865 +1.0 2.0 transcriptional regulator compare
AO353_12720 +1.0 2.6 hypothetical protein compare
AO353_27890 +1.0 4.6 RpiR family transcriptional regulator compare
AO353_05235 +1.0 5.5 septum formation protein Maf compare
AO353_13395 +0.9 1.9 protein hupE compare
AO353_26640 +0.9 4.3 2-oxoisovalerate dehydrogenase compare
AO353_27720 +0.9 2.6 cupin compare
AO353_19505 +0.9 2.3 FAD-dependent oxidoreductase compare
AO353_13300 +0.9 1.6 LOG family protein compare
AO353_09395 +0.9 1.8 type VI secretion protein compare
AO353_25500 +0.9 3.9 phosphoglycerate mutase compare
AO353_09060 +0.9 1.1 hypothetical protein compare
AO353_23450 +0.9 2.1 LysR family transcriptional regulator compare
AO353_29185 +0.9 2.5 TetR family transcriptional regulator compare
AO353_14740 +0.9 2.9 GTP-binding protein compare
AO353_19035 +0.9 4.3 pilus assembly protein PilZ compare
AO353_12270 +0.9 2.1 histidine ammonia-lyase compare
AO353_02265 +0.9 4.5 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific compare
AO353_20255 +0.9 2.0 transcriptional regulator compare
AO353_26815 +0.9 1.8 transcriptional regulator compare
AO353_13530 +0.9 2.4 ABC transporter ATP-binding protein compare
AO353_16355 +0.9 4.2 TetR family transcriptional regulator compare
AO353_28000 +0.9 2.6 branched-chain amino acid ABC transporter compare
AO353_09215 +0.9 6.9 peptide ABC transporter substrate-binding protein compare
AO353_03770 +0.9 3.0 hypothetical protein compare
AO353_08075 +0.9 4.8 hemolysin III compare
AO353_28575 +0.9 2.7 transcriptional regulator compare
AO353_26635 +0.9 4.2 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) compare
AO353_19580 +0.9 1.6 AraC family transcriptional regulator compare
AO353_18750 +0.9 3.4 flagellar biosynthetic protein FliQ compare
AO353_06850 +0.9 2.6 MFS transporter compare
AO353_26935 +0.9 1.2 LysR family transcriptional regulator compare
AO353_08465 +0.9 8.0 phosphoenolpyruvate-protein phosphotransferase compare
AO353_15000 +0.9 1.8 glycerate dehydrogenase compare
AO353_25150 +0.9 2.6 acetoin dehydrogenase compare
AO353_08965 +0.9 4.1 transcriptional regulator compare
AO353_04240 +0.9 0.9 chemotaxis protein CheW compare
AO353_23775 +0.9 5.5 glycogen synthase compare
AO353_13950 +0.9 2.7 50S rRNA methyltransferase compare
AO353_10950 +0.9 5.3 thiol:disulfide interchange protein compare
AO353_03250 +0.9 1.1 gluconokinase compare
AO353_15630 +0.8 3.5 diguanylate cyclase compare
AO353_27585 +0.8 1.7 DNA repair protein compare
AO353_28935 +0.8 0.8 ATPase compare
AO353_12730 +0.8 2.8 hypothetical protein compare
AO353_12470 +0.8 5.8 peptidase compare
AO353_08950 +0.8 2.8 hypothetical protein compare
AO353_19545 +0.8 3.3 aldehyde-activating protein compare
AO353_06745 +0.8 1.2 zinc-binding protein compare
AO353_14000 +0.8 2.0 GTP-binding protein compare
AO353_06390 +0.8 2.7 magnesium transporter compare
AO353_23005 +0.8 1.6 hypothetical protein compare
AO353_27855 +0.8 1.5 MarR family transcriptional regulator compare
AO353_00075 +0.8 3.3 hypothetical protein compare
AO353_28150 +0.8 2.5 arginine aminotransferase compare
AO353_01930 +0.8 2.5 2-hydroxy-3-oxopropionate reductase compare
AO353_22765 +0.8 2.3 addiction module antitoxin compare
AO353_00435 +0.8 5.9 transcription-repair coupling factor compare
AO353_25300 +0.8 2.3 LysR family transcriptional regulator compare
AO353_26335 +0.8 2.4 hypothetical protein compare
AO353_25180 +0.8 3.6 acetylpolyamine aminohydrolase compare
AO353_11610 +0.8 1.4 glutamine ABC transporter ATP-binding protein compare
AO353_06400 +0.8 3.0 hypothetical protein compare
AO353_15170 +0.8 3.0 cytochrome D ubiquinol oxidase subunit III compare
AO353_24985 +0.8 1.8 L-seryl-tRNA(Sec) selenium transferase compare
AO353_20395 +0.8 2.7 GMP synthase compare
AO353_03085 +0.8 4.6 phospholipase compare
AO353_14995 +0.8 3.3 16S rRNA methyltransferase compare
AO353_02715 +0.8 2.3 23S rRNA methyltransferase compare
AO353_02470 +0.8 2.9 Cro/Cl family transcriptional regulator compare
AO353_05505 +0.8 2.9 hypothetical protein compare
AO353_07355 +0.8 1.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_23275 +0.8 2.4 lysine transporter LysE compare
AO353_09775 +0.8 1.9 hypothetical protein compare
AO353_01075 +0.8 3.1 hypothetical protein compare
AO353_00860 +0.8 1.8 EstX protein compare
AO353_20925 +0.8 0.8 hypothetical protein compare
AO353_21495 +0.8 2.1 short-chain dehydrogenase compare
AO353_28485 +0.8 1.4 LysR family transcriptional regulator compare
AO353_08620 +0.8 0.9 hypothetical protein compare
AO353_05490 +0.8 2.7 transcriptional regulator compare
AO353_15820 +0.8 3.4 RNA methyltransferase compare
AO353_10320 +0.8 1.2 hypothetical protein compare
AO353_09750 +0.7 3.1 hypothetical protein compare
AO353_25175 +0.7 2.4 AsnC family transcriptional regulator compare
AO353_07900 +0.7 1.3 hypothetical protein compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source L-Citrulline in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Citrulline across organisms