Experiment set15IT093 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Ornithine

200 most important genes:

  gene name fitness t score description  
AO353_02995 -4.2 -10.1 succinylglutamate desuccinylase compare
AO353_20540 -3.9 -9.9 aromatic amino acid aminotransferase compare
AO353_11850 -3.7 -5.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_13070 -3.7 -10.7 phosphoserine phosphatase compare
AO353_20625 -3.7 -3.6 3-isopropylmalate dehydratase compare
AO353_18715 -3.7 -2.0 histidine kinase compare
AO353_03585 -3.7 -2.5 ATP-dependent DNA helicase RuvA compare
AO353_20635 -3.6 -9.4 3-isopropylmalate dehydrogenase compare
AO353_03035 -3.5 -4.1 AraC family transcriptional regulator compare
AO353_05115 -3.5 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_08185 -3.4 -8.2 methionine biosynthesis protein MetW compare
AO353_20665 -3.4 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20620 -3.4 -5.6 isopropylmalate isomerase compare
AO353_20565 -3.3 -1.5 tRNA-Ala compare
AO353_01350 -3.3 -5.0 4-amino-4-deoxychorismate lyase compare
AO353_20695 -3.3 -6.6 O-succinylhomoserine sulfhydrylase compare
AO353_07230 -3.2 -13.4 anthranilate synthase compare
AO353_12070 -3.2 -6.1 imidazoleglycerol-phosphate dehydratase compare
AO353_22820 -3.2 -18.4 NAD-glutamate dehydrogenase compare
AO353_08885 -3.1 -21.5 polyphosphate kinase compare
AO353_07220 -3.1 -6.8 anthranilate synthase compare
AO353_25630 -3.0 -8.5 arginine N-succinyltransferase compare
AO353_05110 -3.0 -10.0 histidinol dehydrogenase compare
AO353_15830 -3.0 -2.9 transcriptional regulator compare
AO353_03025 -3.0 -2.9 acetylornithine aminotransferase compare
AO353_27680 -3.0 -6.8 ATP-dependent Clp protease adaptor ClpS compare
AO353_08475 -2.9 -7.3 phosphoserine phosphatase compare
AO353_02595 -2.9 -3.6 cobalamin synthase compare
AO353_02075 -2.9 -9.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_07215 -2.8 -6.2 anthranilate phosphoribosyltransferase compare
AO353_27710 -2.7 -2.1 DNA repair protein compare
AO353_08130 -2.7 -1.9 uracil phosphoribosyltransferase compare
AO353_11775 -2.7 -6.0 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_07610 -2.7 -1.2 hypothetical protein compare
AO353_08345 -2.7 -7.4 dihydroxy-acid dehydratase compare
AO353_07210 -2.6 -5.3 indole-3-glycerol-phosphate synthase compare
AO353_13165 -2.6 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20370 -2.6 -3.9 MerR family transcriptional regulator compare
AO353_00520 -2.6 -5.5 universal stress protein UspA compare
AO353_08180 -2.6 -11.2 homoserine O-acetyltransferase compare
AO353_14595 -2.6 -8.9 carbonate dehydratase compare
AO353_04340 -2.6 -3.8 hypothetical protein compare
AO353_14505 -2.5 -10.6 ketol-acid reductoisomerase compare
AO353_12090 -2.5 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
AO353_10235 -2.5 -9.7 glycosyltransferase compare
AO353_04155 -2.5 -9.8 ornithine carbamoyltransferase compare
AO353_15925 -2.5 -11.3 2-isopropylmalate synthase compare
AO353_08465 -2.5 -21.3 phosphoenolpyruvate-protein phosphotransferase compare
AO353_13940 -2.4 -6.7 cytochrome D ubiquinol oxidase subunit I compare
AO353_12085 -2.4 -7.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_00430 -2.4 -2.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_19250 -2.4 -2.6 molybdenum cofactor guanylyltransferase compare
AO353_10035 -2.4 -8.3 LysR family transcriptional regulator compare
AO353_14945 -2.3 -2.8 hypothetical protein compare
AO353_22375 -2.3 -4.4 cytochrome c-550 PedF compare
AO353_14500 -2.3 -3.5 acetolactate synthase 3 regulatory subunit compare
AO353_13160 -2.3 -1.6 membrane protease HflC compare
AO353_20340 -2.3 -2.7 gamma-carboxygeranoyl-CoA hydratase compare
AO353_10230 -2.3 -11.1 glycosyltransferase compare
AO353_20800 -2.3 -1.7 hypothetical protein compare
AO353_10710 -2.2 -3.9 tryptophan synthase subunit beta compare
AO353_01210 -2.2 -12.7 GntR family transcriptional regulator compare
AO353_09045 -2.2 -1.8 hypothetical protein compare
AO353_03010 -2.2 -5.4 succinylglutamate-semialdehyde dehydrogenase compare
AO353_12075 -2.2 -7.6 imidazole glycerol phosphate synthase subunit HisH compare
AO353_01080 -2.2 -9.9 hypothetical protein compare
AO353_04105 -2.1 -5.6 argininosuccinate synthase compare
AO353_05625 -2.1 -1.3 transcription elongation factor GreA compare
AO353_22800 -2.1 -3.1 sulfite reductase compare
AO353_06460 -2.1 -7.9 hypothetical protein compare
AO353_09030 -2.1 -1.3 iron donor protein CyaY compare
AO353_01375 -2.1 -6.5 phosphate acyltransferase compare
AO353_10670 -2.1 -5.1 shikimate dehydrogenase compare
AO353_07315 -2.1 -2.8 rRNA methyltransferase compare
AO353_02040 -2.1 -2.8 integration host factor subunit beta compare
AO353_12015 -2.1 -3.1 antitoxin compare
AO353_03630 -2.1 -10.4 porin compare
AO353_04055 -2.1 -2.1 methionine--tRNA ligase compare
AO353_15295 -2.0 -6.6 division/cell wall cluster transcriptional repressor MraZ compare
AO353_09320 -2.0 -8.7 ATP-dependent DNA helicase RecG compare
AO353_02520 -2.0 -2.2 sodium transporter compare
AO353_19090 -2.0 -1.4 MarR family transcriptional regulator compare
AO353_02720 -2.0 -5.3 cysteine synthase compare
AO353_10170 -2.0 -8.1 fatty acid methyltransferase compare
AO353_06455 -2.0 -1.9 D-alanyl-D-alanine carboxypeptidase compare
AO353_03000 -2.0 -2.1 topoisomerase II compare
AO353_01990 -2.0 -7.0 UDP-N-acetylglucosamine 2-epimerase compare
AO353_00870 -2.0 -3.9 hypothetical protein compare
AO353_02970 -2.0 -2.9 carbon storage regulator compare
AO353_10025 -2.0 -11.2 pyruvate carboxylase subunit B compare
AO353_25635 -1.9 -6.6 citrulline utilization hydrolase (from data) conserved
AO353_11165 -1.9 -8.2 hypothetical protein compare
AO353_02570 -1.9 -2.8 hypothetical protein compare
AO353_14495 -1.9 -4.4 acetolactate synthase 3 catalytic subunit compare
AO353_09135 -1.9 -1.3 cytochrome C compare
AO353_06325 -1.9 -2.2 hypothetical protein compare
AO353_20860 -1.9 -2.7 hypothetical protein compare
AO353_10030 -1.9 -9.2 pyruvate carboxylase subunit A compare
AO353_04565 -1.9 -3.6 nucleoid-associated protein compare
AO353_12345 -1.9 -1.3 twin-arginine protein translocation system subunit TatC compare
AO353_05800 -1.9 -4.9 hypothetical protein compare
AO353_12360 -1.9 -7.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_27675 -1.9 -7.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_00455 -1.8 -2.9 beta-hexosaminidase compare
AO353_11485 -1.8 -3.9 hypothetical protein compare
AO353_24605 -1.8 -2.0 hypothetical protein compare
AO353_11940 -1.8 -2.7 hypothetical protein compare
AO353_08350 -1.8 -6.9 hypothetical protein compare
AO353_03295 -1.8 -10.8 ribonuclease BN compare
AO353_27650 -1.8 -4.1 cell division protein FtsK compare
AO353_27525 -1.8 -2.2 AraC family transcriptional regulator compare
AO353_22810 -1.8 -1.2 hypothetical protein compare
AO353_00495 -1.8 -1.7 DNA topoisomerase I compare
AO353_24805 -1.7 -5.6 TetR family transcriptional regulator compare
AO353_18510 -1.7 -3.4 hypothetical protein compare
AO353_26055 -1.7 -1.8 hypothetical protein compare
AO353_24340 -1.7 -1.8 TetR family transcriptional regulator compare
AO353_12790 -1.7 -1.6 hypothetical protein compare
AO353_12365 -1.7 -2.6 phosphoribosyl-AMP cyclohydrolase compare
AO353_20840 -1.7 -2.2 ribose pyranase compare
AO353_01975 -1.7 -6.5 glycosyl transferase compare
AO353_08015 -1.6 -4.9 5,10-methylenetetrahydrofolate reductase compare
AO353_16440 -1.6 -3.9 ArsC family transcriptional regulator compare
AO353_07560 -1.6 -10.1 malate synthase G compare
AO353_20785 -1.6 -4.1 carbon storage regulator CsrA compare
AO353_08510 -1.6 -3.4 3-phosphoglycerate dehydrogenase compare
AO353_26100 -1.6 -2.4 lysozyme compare
AO353_14380 -1.6 -4.0 pantoate--beta-alanine ligase compare
AO353_21540 -1.6 -2.6 type VI secretion protein compare
AO353_03100 -1.6 -2.0 XRE family transcriptional regulator compare
AO353_12810 -1.6 -10.9 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) conserved
AO353_18130 -1.6 -1.7 hypothetical protein compare
AO353_10430 -1.6 -3.2 chromosome partitioning protein ParB compare
AO353_24915 -1.6 -2.0 hypothetical protein compare
AO353_23280 -1.6 -2.4 hypothetical protein compare
AO353_20980 -1.5 -2.6 hypothetical protein compare
AO353_27995 -1.5 -3.8 RpiR family transcriptional regulator compare
AO353_09000 -1.5 -1.5 argininosuccinate lyase compare
AO353_01985 -1.5 -6.8 hypothetical protein compare
AO353_02025 -1.5 -7.4 mannose-1-phosphate guanyltransferase compare
AO353_00610 -1.5 -1.2 cytochrome C oxidase Cbb3 compare
AO353_08505 -1.5 -7.8 FAD-linked oxidase compare
AO353_00620 -1.5 -1.8 cytochrome C oxidase Cbb3 compare
AO353_26240 -1.5 -3.1 hypothetical protein compare
AO353_21055 -1.5 -4.6 glycosyl hydrolase compare
AO353_12390 -1.5 -3.0 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_27435 -1.5 -1.1 hypothetical protein compare
AO353_16805 -1.5 -4.4 recombinase RecA compare
AO353_14940 -1.4 -2.5 malate:quinone oxidoreductase compare
AO353_09690 -1.4 -2.3 hypothetical protein compare
AO353_08645 -1.4 -2.3 transporter compare
AO353_09050 -1.4 -2.8 recombinase XerC compare
AO353_01595 -1.4 -2.3 Flp pilus assembly protein CpaB compare
AO353_01995 -1.4 -8.5 hypothetical protein compare
AO353_23745 -1.4 -4.6 acetylglucosaminylphosphatidylinositol deacetylase compare
AO353_08780 -1.4 -5.2 5-formyltetrahydrofolate cyclo-ligase compare
AO353_09720 -1.4 -1.2 hypothetical protein compare
AO353_19530 -1.4 -1.2 quinohemoprotein amine dehydrogenase compare
AO353_25185 -1.4 -4.8 ornithine cyclodeaminase conserved
AO353_04365 -1.4 -3.9 recombinase XerD compare
AO353_08435 -1.4 -2.6 phosphatidylglycerophosphatase compare
AO353_17645 -1.4 -6.8 peptidase M48 compare
AO353_16820 -1.4 -1.9 hypothetical protein compare
AO353_02010 -1.4 -3.9 glycosyl transferase family 1 compare
AO353_08115 -1.3 -2.0 energy transducer TonB compare
AO353_08035 -1.3 -3.2 hypothetical protein compare
AO353_00605 -1.3 -4.6 cytochrome C oxidase Cbb3 compare
AO353_00865 -1.3 -5.9 phosphoenolpyruvate synthase compare
AO353_16980 -1.3 -2.1 isochorismatase compare
AO353_08265 -1.3 -3.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_21355 -1.3 -1.5 xylose isomerase compare
AO353_24130 -1.3 -2.1 hypothetical protein compare
AO353_10630 -1.3 -3.6 16S rRNA methyltransferase compare
AO353_00655 -1.3 -5.7 coproporphyrinogen III oxidase compare
AO353_15270 -1.3 -3.7 phospholipid-binding protein compare
AO353_08910 -1.3 -1.8 hypothetical protein compare
AO353_00810 -1.3 -2.4 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_03370 -1.3 -2.6 aldose epimerase compare
AO353_27090 -1.3 -1.8 hypothetical protein compare
AO353_10320 -1.3 -1.6 hypothetical protein compare
AO353_18985 -1.3 -1.9 hypothetical protein compare
AO353_18270 -1.3 -2.9 peptidylprolyl isomerase compare
AO353_04090 -1.3 -2.0 leucyl-tRNA synthetase compare
AO353_01550 -1.3 -3.6 hypothetical protein compare
AO353_25175 -1.3 -3.3 AsnC family transcriptional regulator compare
AO353_07190 -1.2 -7.2 S-adenosylmethionine decarboxylase proenzyme compare
AO353_17820 -1.2 -3.0 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO353_24255 -1.2 -2.7 hypothetical protein compare
AO353_03820 -1.2 -2.5 Asp/Glu/hydantoin racemase compare
AO353_17675 -1.2 -3.8 hypothetical protein compare
AO353_03580 -1.2 -2.6 ATP-dependent DNA helicase RuvB compare
AO353_16765 -1.2 -1.9 hypothetical protein compare
AO353_19055 -1.2 -3.8 universal stress protein UspA compare
AO353_19770 -1.2 -2.3 peptidase compare
AO353_16605 -1.2 -7.0 protein-L-isoaspartate O-methyltransferase compare
AO353_09405 -1.2 -3.0 type VI secretion protein compare
AO353_07140 -1.2 -7.4 peptidase M23 compare
AO353_22220 -1.2 -2.7 copper resistance protein CopC compare
AO353_08620 -1.2 -1.3 hypothetical protein compare
AO353_13945 -1.2 -3.6 ubiquinol oxidase subunit II compare


Specific Phenotypes

For 22 genes in this experiment

For carbon source L-Ornithine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Ornithine across organisms