Experiment set15IT093 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Ornithine

200 most detrimental genes:

  gene name fitness t score description  
AO353_04865 +3.3 13.4 hypothetical protein compare
AO353_04870 +3.2 12.3 AraC family transcriptional regulator compare
AO353_20300 +3.1 18.4 anti-sigma factor compare
AO353_01055 +2.9 27.8 AraC family transcriptional regulator compare
AO353_01060 +2.8 23.9 3-ketoacyl-ACP reductase compare
AO353_01065 +2.7 20.6 acetyl-CoA acetyltransferase compare
AO353_01070 +2.7 26.0 poly(R)-hydroxyalkanoic acid synthase compare
AO353_00900 +2.7 15.5 2-methylisocitrate lyase compare
AO353_26390 +2.5 4.3 glyoxalase compare
AO353_05130 +2.4 2.8 anti-anti-sigma factor compare
AO353_06160 +2.3 10.3 transcriptional regulator compare
AO353_08595 +2.3 10.1 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
AO353_13720 +2.3 14.7 arginine decarboxylase compare
AO353_21620 +2.2 18.9 peptidylprolyl isomerase compare
AO353_06155 +2.2 12.9 copper-transporting ATPase compare
AO353_05135 +2.2 12.2 toluene tolerance protein compare
AO353_25660 +2.2 5.7 ABC transporter substrate-binding protein compare
AO353_00890 +2.1 11.2 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_22860 +2.0 12.8 cytochrome C oxidase Cbb3 compare
AO353_05145 +2.0 8.6 ABC transporter permease compare
AO353_15290 +2.0 12.8 methyltransferase compare
AO353_00955 +2.0 2.5 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_09275 +2.0 6.8 DNA-directed RNA polymerase subunit omega compare
AO353_19340 +1.9 17.8 amino acid ABC transporter substrate-binding protein compare
AO353_05230 +1.9 9.9 ribonuclease G compare
AO353_01045 +1.9 6.1 phasin compare
AO353_03520 +1.9 3.2 hypothetical protein compare
AO353_21425 +1.9 8.0 hypothetical protein compare
AO353_00660 +1.9 5.7 transcriptional regulator compare
AO353_09705 +1.9 4.0 hypothetical protein compare
AO353_07645 +1.9 3.4 sarcosine oxidase subunit gamma compare
AO353_14150 +1.8 3.0 peptidylprolyl isomerase compare
AO353_00635 +1.8 4.3 hypothetical protein compare
AO353_03515 +1.7 2.7 cold-shock protein compare
AO353_11155 +1.6 15.4 thioesterase compare
AO353_19060 +1.6 8.0 CysB family transcriptional regulator compare
AO353_08995 +1.6 12.0 chemotaxis protein CheY compare
AO353_04360 +1.6 7.5 protein-disulfide isomerase compare
AO353_22920 +1.6 6.7 GntR family transcriptional regulator compare
AO353_18630 +1.6 10.6 beta-ketoacyl-ACP synthase compare
AO353_06850 +1.6 5.8 MFS transporter compare
AO353_25655 +1.6 6.1 amino acid ABC transporter permease compare
AO353_06585 +1.6 8.9 hypothetical protein compare
AO353_16615 +1.5 11.7 RNA polymerase sigma factor RpoS compare
AO353_21830 +1.5 14.3 chemotaxis protein CheY compare
AO353_29185 +1.5 6.7 TetR family transcriptional regulator compare
AO353_05240 +1.5 2.8 rod shape-determining protein MreD compare
AO353_09060 +1.5 2.0 hypothetical protein compare
AO353_02735 +1.5 14.6 chemotaxis protein CheY compare
AO353_00600 +1.5 8.0 cytochrome C oxidase Cbb3 compare
AO353_06515 +1.5 6.1 hypothetical protein compare
AO353_05150 +1.5 5.4 ABC transporter ATP-binding protein compare
AO353_15885 +1.5 4.3 Cro/Cl family transcriptional regulator compare
AO353_00330 +1.5 8.3 hypothetical protein compare
AO353_11160 +1.4 9.3 GntR family transcriptional regulator compare
AO353_00885 +1.4 5.7 3-methylitaconate isomerase compare
AO353_25650 +1.4 7.6 amino acid ABC transporter permease compare
AO353_11915 +1.4 4.7 agmatine deiminase compare
AO353_09945 +1.4 5.1 LysR family transcriptional regulator compare
AO353_25570 +1.3 8.2 glycosyltransferase compare
AO353_05105 +1.3 7.3 histidinol-phosphate aminotransferase compare
AO353_24415 +1.3 3.3 glutamine ABC transporter ATP-binding protein compare
AO353_03635 +1.3 7.5 mechanosensitive ion channel protein MscS compare
AO353_27500 +1.3 1.6 hypothetical protein compare
AO353_00460 +1.3 3.2 TetR family transcriptional regulator compare
AO353_14460 +1.3 5.8 competence protein TfoX compare
AO353_23405 +1.3 2.1 hypothetical protein compare
AO353_15985 +1.3 6.0 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
AO353_03710 +1.3 3.2 formyltetrahydrofolate deformylase compare
AO353_09440 +1.3 1.7 type VI secretion protein compare
AO353_19025 +1.3 9.3 acetyltransferase compare
AO353_16495 +1.3 5.3 zinc metallopeptidase RseP compare
AO353_06735 +1.3 5.5 thioredoxin compare
AO353_20865 +1.3 3.3 cold-shock protein compare
AO353_27890 +1.2 5.8 RpiR family transcriptional regulator compare
AO353_16530 +1.2 0.9 ribonuclease HII compare
AO353_08965 +1.2 6.4 transcriptional regulator compare
AO353_12145 +1.2 2.8 nitrogen regulation protein NR(I) compare
AO353_15285 +1.2 7.9 hypothetical protein compare
AO353_06540 +1.2 2.3 hypothetical protein compare
AO353_02465 +1.2 2.5 hypothetical protein compare
AO353_01810 +1.2 7.1 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_13025 +1.2 6.1 ADP-ribose pyrophosphatase compare
AO353_29005 +1.2 2.4 hypothetical protein compare
AO353_02300 +1.2 2.9 MarR family transcriptional regulator compare
AO353_09215 +1.2 9.3 peptide ABC transporter substrate-binding protein compare
AO353_18400 +1.2 3.5 agmatinase compare
AO353_05140 +1.1 4.9 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_09890 +1.1 3.2 phosphate ABC transporter ATP-binding protein compare
AO353_12580 +1.1 1.3 type II secretory protein PulK compare
AO353_23620 +1.1 1.8 hypothetical protein compare
AO353_00195 +1.1 2.7 virion morphogenesis protein compare
AO353_03250 +1.1 1.5 gluconokinase compare
AO353_11910 +1.1 3.8 N-carbamoylputrescine amidase compare
AO353_18890 +1.1 3.4 cytochrome C compare
AO353_09025 +1.1 2.5 nucleoside diphosphate kinase regulator compare
AO353_06320 +1.1 2.9 AsnC family transcriptional regulator compare
AO353_20790 +1.1 2.1 penicillin-binding protein activator LpoB compare
AO353_07265 +1.1 4.3 spermidine/putrescine ABC transporter ATP-binding protein compare
AO353_21110 +1.1 2.5 hypothetical protein compare
AO353_21625 +1.1 2.5 Fe/S biogenesis protein NfuA compare
AO353_08195 +1.1 4.5 non-canonical purine NTP pyrophosphatase compare
AO353_26635 +1.1 5.4 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) compare
AO353_03085 +1.0 6.8 phospholipase compare
AO353_14590 +1.0 1.2 serine kinase/phosphatase compare
AO353_04180 +1.0 5.5 glycerol kinase compare
AO353_21330 +1.0 4.9 RpiR family transcriptional regulator compare
AO353_12395 +1.0 3.0 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_08210 +1.0 3.6 tRNA (guanine-N7)-methyltransferase compare
AO353_16375 +1.0 2.0 hypothetical protein compare
AO353_10950 +1.0 6.3 thiol:disulfide interchange protein compare
AO353_25900 +1.0 5.3 mannitol dehydrogenase compare
AO353_03005 +1.0 2.5 succinylarginine dihydrolase compare
AO353_23730 +1.0 2.9 hypothetical protein compare
AO353_08540 +1.0 5.7 alpha/beta hydrolase compare
AO353_03455 +1.0 3.1 acyl-CoA transferase compare
AO353_03465 +1.0 7.0 arginine-ornithine antiporter conserved
AO353_00630 +1.0 4.0 (Fe-S)-binding protein compare
AO353_09265 +1.0 2.1 hypothetical protein compare
AO353_13610 +1.0 2.7 precorrin isomerase compare
AO353_07760 +1.0 4.0 gamma-butyrobetaine dioxygenase compare
AO353_15820 +1.0 5.9 RNA methyltransferase compare
AO353_06725 +1.0 2.0 hypothetical protein compare
AO353_16355 +1.0 4.6 TetR family transcriptional regulator compare
AO353_22345 +1.0 5.0 ATPase compare
AO353_01705 +1.0 2.4 alpha/beta hydrolase compare
AO353_10990 +1.0 5.5 glutamate:protein symporter compare
AO353_18135 +1.0 2.4 hypothetical protein compare
AO353_02470 +1.0 3.6 Cro/Cl family transcriptional regulator compare
AO353_02630 +1.0 2.3 5,6-dimethylbenzimidazole synthase compare
AO353_21630 +1.0 1.9 precorrin-4 C11-methyltransferase compare
AO353_19825 +1.0 6.4 shikimate dehydrogenase compare
AO353_03510 +1.0 3.1 glycine cleavage system protein T compare
AO353_19605 +1.0 1.7 hypothetical protein compare
AO353_03470 +1.0 3.7 arginine deiminase compare
AO353_00590 +1.0 3.3 cytochrome C oxidase Cbb3 compare
AO353_21205 +1.0 3.1 hypothetical protein compare
AO353_15410 +1.0 1.7 hypothetical protein compare
AO353_18585 +1.0 6.0 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
AO353_06720 +0.9 1.3 NrdR family transcriptional regulator compare
AO353_12470 +0.9 6.8 peptidase compare
AO353_01270 +0.9 3.3 2-dehydro-3-deoxygalactonokinase compare
AO353_22340 +0.9 3.0 GfdT protein compare
AO353_26285 +0.9 0.9 hypothetical protein compare
AO353_05235 +0.9 5.4 septum formation protein Maf compare
AO353_01075 +0.9 3.8 hypothetical protein compare
AO353_13100 +0.9 0.9 GTPase RsgA compare
AO353_20255 +0.9 2.2 transcriptional regulator compare
AO353_08075 +0.9 5.1 hemolysin III compare
AO353_11610 +0.9 2.6 glutamine ABC transporter ATP-binding protein compare
AO353_02265 +0.9 4.6 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific compare
AO353_23775 +0.9 6.6 glycogen synthase compare
AO353_02200 +0.9 3.2 hypothetical protein compare
AO353_26640 +0.9 4.0 2-oxoisovalerate dehydrogenase compare
AO353_17785 +0.9 2.0 hypothetical protein compare
AO353_10940 +0.9 3.2 cytochrome compare
AO353_03400 +0.9 3.6 D-mannose isomerase (EC 5.3.1.7) (from data) compare
AO353_23590 +0.9 1.8 ArsR family transcriptional regulator compare
AO353_18505 +0.9 1.3 translation initiation factor 2 compare
AO353_15210 +0.9 2.7 Zn-dependent hydrolase compare
AO353_25500 +0.9 3.5 phosphoglycerate mutase compare
AO353_12650 +0.9 0.8 hypothetical protein compare
AO353_19435 +0.9 2.4 TetR family transcriptional regulator compare
AO353_21825 +0.9 4.0 GNAT family acetyltransferase compare
AO353_13865 +0.9 2.0 hypothetical protein compare
AO353_00105 +0.9 0.9 hypothetical protein compare
AO353_01800 +0.9 3.5 hypothetical protein compare
AO353_14000 +0.9 2.6 GTP-binding protein compare
AO353_00435 +0.8 6.6 transcription-repair coupling factor compare
AO353_21240 +0.8 2.9 undecaprenyl-phosphate glucose phosphotransferase compare
AO353_20925 +0.8 1.9 hypothetical protein compare
AO353_13360 +0.8 3.2 ABC transporter ATP-binding protein compare
AO353_13515 +0.8 2.6 Urease (EC 3.5.1.5) (from data) compare
AO353_20140 +0.8 1.7 hypothetical protein compare
AO353_27460 +0.8 1.8 hypothetical protein compare
AO353_12030 +0.8 3.2 hypothetical protein compare
AO353_06495 +0.8 2.8 gamma-glutamyl phosphate reductase compare
AO353_27905 +0.8 3.0 N-formylglutamate amidohydrolase compare
AO353_08555 +0.8 2.9 hypothetical protein compare
AO353_13140 +0.8 2.7 tRNA dimethylallyltransferase compare
AO353_22855 +0.8 1.9 hypothetical protein compare
AO353_18925 +0.8 1.6 ATPase compare
AO353_24535 +0.8 1.8 hypothetical protein compare
AO353_17325 +0.8 3.4 arabinose transporter permease compare
AO353_21030 +0.8 2.7 hypothetical protein compare
AO353_25665 +0.8 2.6 3-hydroxy-isobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
AO353_02335 +0.8 2.8 ureidoglycolate hydrolase compare
AO353_25220 +0.8 2.3 hypothetical protein compare
AO353_25015 +0.8 2.5 polyketide cyclase compare
AO353_03215 +0.8 2.0 pyridoxamine 5'-phosphate oxidase compare
AO353_09785 +0.8 1.4 hypothetical protein compare
AO353_12870 +0.8 6.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_05070 +0.8 2.6 acyltransferase compare
AO353_27380 +0.8 1.0 pyocin R2, holin compare
AO353_20175 +0.8 1.5 ATP-dependent Clp protease proteolytic subunit compare
AO353_04775 +0.8 3.0 hypothetical protein compare
AO353_20425 +0.8 2.1 ArsC family transcriptional regulator compare
AO353_22645 +0.8 1.2 hypothetical protein compare
AO353_25640 +0.8 1.5 AsnC family transcriptional regulator compare
AO353_26485 +0.8 2.7 hypothetical protein compare


Specific Phenotypes

For 22 genes in this experiment

For carbon source L-Ornithine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Ornithine across organisms