Experiment set15IT092 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Ornithine

200 most important genes:

  gene name fitness t score description  
AO353_09745 -3.1 -2.1 hypothetical protein compare
AO353_02995 -3.1 -8.2 succinylglutamate desuccinylase compare
AO353_01350 -3.0 -3.0 4-amino-4-deoxychorismate lyase compare
AO353_25630 -3.0 -6.1 arginine N-succinyltransferase compare
AO353_23495 -3.0 -2.0 SAM-dependent methyltransferase compare
AO353_20540 -2.9 -8.3 aromatic amino acid aminotransferase compare
AO353_20695 -2.9 -4.3 O-succinylhomoserine sulfhydrylase compare
AO353_20565 -2.8 -1.4 tRNA-Ala compare
AO353_05110 -2.8 -6.4 histidinol dehydrogenase compare
AO353_20665 -2.7 -5.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_03035 -2.7 -3.2 AraC family transcriptional regulator compare
AO353_13165 -2.7 -3.2 ATP phosphoribosyltransferase regulatory subunit compare
AO353_23220 -2.6 -2.5 hypothetical protein compare
AO353_00520 -2.6 -3.1 universal stress protein UspA compare
AO353_14595 -2.5 -6.1 carbonate dehydratase compare
AO353_13070 -2.5 -9.2 phosphoserine phosphatase compare
AO353_03290 -2.5 -1.7 peptide deformylase compare
AO353_27675 -2.5 -6.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_14505 -2.5 -6.0 ketol-acid reductoisomerase compare
AO353_12085 -2.4 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07230 -2.4 -10.3 anthranilate synthase compare
AO353_12365 -2.4 -1.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_03010 -2.4 -4.8 succinylglutamate-semialdehyde dehydrogenase compare
AO353_08885 -2.3 -15.8 polyphosphate kinase compare
AO353_07210 -2.3 -3.2 indole-3-glycerol-phosphate synthase compare
AO353_20635 -2.3 -8.5 3-isopropylmalate dehydrogenase compare
AO353_15900 -2.3 -1.6 GTP-binding protein compare
AO353_27650 -2.3 -2.2 cell division protein FtsK compare
AO353_14385 -2.3 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO353_21410 -2.3 -2.4 hypothetical protein compare
AO353_25635 -2.3 -5.9 citrulline utilization hydrolase (from data) conserved
AO353_09720 -2.3 -1.9 hypothetical protein compare
AO353_12090 -2.2 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
AO353_22820 -2.2 -10.5 NAD-glutamate dehydrogenase compare
AO353_07215 -2.2 -4.4 anthranilate phosphoribosyltransferase compare
AO353_08345 -2.2 -5.1 dihydroxy-acid dehydratase compare
AO353_05115 -2.2 -7.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_08180 -2.2 -7.9 homoserine O-acetyltransferase compare
AO353_03025 -2.2 -2.1 acetylornithine aminotransferase compare
AO353_11850 -2.2 -4.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_10035 -2.1 -5.8 LysR family transcriptional regulator compare
AO353_02130 -2.1 -3.5 disulfide bond formation protein DsbA compare
AO353_20625 -2.1 -3.5 3-isopropylmalate dehydratase compare
AO353_02075 -2.1 -6.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_25990 -2.0 -3.9 aspartyl beta-hydroxylase compare
AO353_12070 -2.0 -5.6 imidazoleglycerol-phosphate dehydratase compare
AO353_03015 -2.0 -1.4 arginine N-succinyltransferase compare
AO353_08185 -2.0 -7.2 methionine biosynthesis protein MetW compare
AO353_12790 -2.0 -1.9 hypothetical protein compare
AO353_07445 -2.0 -1.5 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_29215 -1.9 -2.6 alpha/beta hydrolase compare
AO353_09235 -1.9 -5.5 phosphoglucomutase compare
AO353_21935 -1.9 -2.3 nitrite reductase compare
AO353_10710 -1.9 -2.3 tryptophan synthase subunit beta compare
AO353_11165 -1.9 -6.4 hypothetical protein compare
AO353_06460 -1.9 -5.7 hypothetical protein compare
AO353_04155 -1.9 -6.8 ornithine carbamoyltransferase compare
AO353_14485 -1.9 -0.9 pseudouridine synthase compare
AO353_03585 -1.9 -2.1 ATP-dependent DNA helicase RuvA compare
AO353_22645 -1.9 -1.8 hypothetical protein compare
AO353_02520 -1.9 -1.8 sodium transporter compare
AO353_10230 -1.8 -7.5 glycosyltransferase compare
AO353_12075 -1.8 -4.7 imidazole glycerol phosphate synthase subunit HisH compare
AO353_10430 -1.8 -2.5 chromosome partitioning protein ParB compare
AO353_10235 -1.8 -6.5 glycosyltransferase compare
AO353_10025 -1.8 -8.6 pyruvate carboxylase subunit B compare
AO353_04220 -1.8 -4.9 chemotaxis protein CheY compare
AO353_06325 -1.8 -1.7 hypothetical protein compare
AO353_20340 -1.8 -1.7 gamma-carboxygeranoyl-CoA hydratase compare
AO353_02015 -1.8 -5.4 acetyltransferase compare
AO353_16040 -1.8 -2.2 hypothetical protein compare
AO353_00170 -1.8 -2.6 lysozyme compare
AO353_20620 -1.8 -4.4 isopropylmalate isomerase compare
AO353_10030 -1.8 -6.2 pyruvate carboxylase subunit A compare
AO353_08465 -1.7 -15.4 phosphoenolpyruvate-protein phosphotransferase compare
AO353_26090 -1.7 -1.6 hypothetical protein compare
AO353_27995 -1.7 -2.9 RpiR family transcriptional regulator compare
AO353_06405 -1.7 -2.7 hypothetical protein compare
AO353_19530 -1.6 -1.1 quinohemoprotein amine dehydrogenase compare
AO353_12650 -1.6 -0.8 hypothetical protein compare
AO353_03150 -1.6 -3.4 peptidase M4 compare
AO353_15925 -1.6 -8.1 2-isopropylmalate synthase compare
AO353_03295 -1.6 -10.2 ribonuclease BN compare
AO353_08475 -1.6 -5.6 phosphoserine phosphatase compare
AO353_14940 -1.6 -1.5 malate:quinone oxidoreductase compare
AO353_04065 -1.6 -2.4 electron transporter RnfB compare
AO353_00495 -1.6 -1.1 DNA topoisomerase I compare
AO353_24535 -1.6 -1.5 hypothetical protein compare
AO353_19565 -1.6 -2.6 vanillate O-demethylase oxidoreductase VanB compare
AO353_08350 -1.6 -4.6 hypothetical protein compare
AO353_10670 -1.6 -3.1 shikimate dehydrogenase compare
AO353_03630 -1.5 -6.7 porin compare
AO353_13160 -1.5 -1.0 membrane protease HflC compare
AO353_20200 -1.5 -2.5 peptidylprolyl isomerase compare
AO353_01210 -1.5 -8.6 GntR family transcriptional regulator compare
AO353_08780 -1.5 -4.5 5-formyltetrahydrofolate cyclo-ligase compare
AO353_02040 -1.5 -1.9 integration host factor subunit beta compare
AO353_06710 -1.5 -1.6 riboflavin synthase subunit alpha compare
AO353_27685 -1.5 -3.0 cold-shock protein compare
AO353_00540 -1.5 -3.0 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_25185 -1.5 -4.9 ornithine cyclodeaminase conserved
AO353_26315 -1.4 -2.9 hypothetical protein compare
AO353_04410 -1.4 -1.9 phosphoribosylglycinamide formyltransferase compare
AO353_22930 -1.4 -2.0 hypothetical protein compare
AO353_00655 -1.4 -4.2 coproporphyrinogen III oxidase compare
AO353_12690 -1.4 -0.8 acyl carrier protein compare
AO353_07220 -1.4 -4.9 anthranilate synthase compare
AO353_21905 -1.4 -1.8 hypothetical protein compare
AO353_04105 -1.4 -3.7 argininosuccinate synthase compare
AO353_05625 -1.4 -0.9 transcription elongation factor GreA compare
AO353_16805 -1.4 -2.6 recombinase RecA compare
AO353_12710 -1.4 -1.1 thioredoxin compare
AO353_02175 -1.4 -2.2 carbon storage regulator compare
AO353_16265 -1.4 -4.3 Fis family transcriptional regulator compare
AO353_14380 -1.4 -3.4 pantoate--beta-alanine ligase compare
AO353_02570 -1.3 -1.4 hypothetical protein compare
AO353_07560 -1.3 -7.4 malate synthase G compare
AO353_02885 -1.3 -1.3 flagellar biosynthesis protein FlgN compare
AO353_08130 -1.3 -1.8 uracil phosphoribosyltransferase compare
AO353_22420 -1.3 -3.1 histidine kinase compare
AO353_27680 -1.3 -4.0 ATP-dependent Clp protease adaptor ClpS compare
AO353_27335 -1.3 -1.4 hypothetical protein compare
AO353_22305 -1.3 -2.1 LysR family transcriptional regulator compare
AO353_02135 -1.3 -5.3 hypothetical protein compare
AO353_19250 -1.3 -1.6 molybdenum cofactor guanylyltransferase compare
AO353_04365 -1.3 -2.6 recombinase XerD compare
AO353_08505 -1.3 -5.4 FAD-linked oxidase compare
AO353_02450 -1.3 -3.2 hypothetical protein compare
AO353_19090 -1.3 -0.9 MarR family transcriptional regulator compare
AO353_03580 -1.3 -1.2 ATP-dependent DNA helicase RuvB compare
AO353_01375 -1.3 -4.1 phosphate acyltransferase compare
AO353_06415 -1.3 -2.0 hypothetical protein compare
AO353_01985 -1.2 -5.6 hypothetical protein compare
AO353_27090 -1.2 -1.0 hypothetical protein compare
AO353_01990 -1.2 -4.1 UDP-N-acetylglucosamine 2-epimerase compare
AO353_02220 -1.2 -1.2 hypothetical protein compare
AO353_08015 -1.2 -2.6 5,10-methylenetetrahydrofolate reductase compare
AO353_10510 -1.2 -1.2 benzoate transporter compare
AO353_02755 -1.2 -4.6 peroxiredoxin compare
AO353_09320 -1.2 -5.6 ATP-dependent DNA helicase RecG compare
AO353_13085 -1.2 -2.9 histidine kinase compare
AO353_18715 -1.2 -1.2 histidine kinase compare
AO353_01995 -1.2 -7.1 hypothetical protein compare
AO353_16605 -1.2 -6.5 protein-L-isoaspartate O-methyltransferase compare
AO353_11750 -1.2 -1.1 ATPase compare
AO353_26825 -1.2 -2.9 bifunctional pyrazinamidase/nicotinamidase compare
AO353_01080 -1.2 -5.4 hypothetical protein compare
AO353_17675 -1.2 -2.5 hypothetical protein compare
AO353_17540 -1.2 -2.0 helicase compare
AO353_03055 -1.1 -4.7 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) compare
AO353_12345 -1.1 -0.8 twin-arginine protein translocation system subunit TatC compare
AO353_07140 -1.1 -7.5 peptidase M23 compare
AO353_12810 -1.1 -7.2 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) conserved
AO353_02025 -1.1 -5.5 mannose-1-phosphate guanyltransferase compare
AO353_17935 -1.1 -1.7 hypothetical protein compare
AO353_25335 -1.1 -0.9 malonate decarboxylase acyl carrier protein compare
AO353_22270 -1.1 -2.4 antibiotic biosynthesis monooxygenase compare
AO353_13420 -1.1 -1.3 hypothetical protein compare
AO353_07315 -1.1 -1.5 rRNA methyltransferase compare
AO353_00455 -1.1 -1.7 beta-hexosaminidase compare
AO353_14795 -1.1 -3.0 molybdopterin-synthase adenylyltransferase compare
AO353_25190 -1.1 -5.4 amino acid transporter compare
AO353_13585 -1.1 -2.4 predicted copper homeostasis protein (from data) compare
AO353_04500 -1.1 -1.7 DNA repair protein RecO compare
AO353_19580 -1.1 -2.2 AraC family transcriptional regulator compare
AO353_25310 -1.1 -2.3 malonate carrier protein compare
AO353_22035 -1.1 -2.6 pyridoxine 5'-phosphate oxidase compare
AO353_03590 -1.1 -1.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_00610 -1.1 -0.7 cytochrome C oxidase Cbb3 compare
AO353_16820 -1.1 -2.0 hypothetical protein compare
AO353_23965 -1.1 -3.1 RND transporter MFP subunit compare
AO353_10225 -1.1 -3.1 methyltransferase compare
AO353_21805 -1.1 -1.9 peptidylprolyl isomerase compare
AO353_23720 -1.1 -2.4 BatB protein compare
AO353_27100 -1.1 -3.8 hypothetical protein compare
AO353_17445 -1.1 -1.9 hypothetical protein compare
AO353_03625 -1.1 -3.7 histidine triad (HIT) protein compare
AO353_03045 -1.0 -5.5 ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) compare
AO353_09115 -1.0 -4.1 diguanylate cyclase compare
AO353_12360 -1.0 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_19055 -1.0 -4.0 universal stress protein UspA compare
AO353_27455 -1.0 -2.2 hypothetical protein compare
AO353_12225 -1.0 -2.2 hypothetical protein compare
AO353_06290 -1.0 -3.3 hypothetical protein compare
AO353_14500 -1.0 -2.4 acetolactate synthase 3 regulatory subunit compare
AO353_02970 -1.0 -1.8 carbon storage regulator compare
AO353_09345 -1.0 -1.0 hypothetical protein compare
AO353_26945 -1.0 -1.3 transcriptional regulator compare
AO353_01975 -1.0 -3.5 glycosyl transferase compare
AO353_02655 -1.0 -3.4 peptidase P60 compare
AO353_07625 -1.0 -1.9 RNA polymerase subunit sigma-70 compare
AO353_27415 -1.0 -1.4 hypothetical protein compare
AO353_18945 -1.0 -2.4 hypothetical protein compare
AO353_09835 -1.0 -1.7 rubredoxin compare
AO353_10170 -1.0 -4.7 fatty acid methyltransferase compare
AO353_18005 -1.0 -2.8 allophanate hydrolase compare
AO353_01915 -1.0 -1.1 GlcG protein compare
AO353_09885 -1.0 -1.6 transcriptional regulator PhoU compare
AO353_04090 -0.9 -1.5 leucyl-tRNA synthetase compare
AO353_25195 -0.9 -2.8 NAD(P)H:quinone oxidoreductase compare


Specific Phenotypes

For 25 genes in this experiment

For carbon source L-Ornithine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Ornithine across organisms