Experiment set15IT091 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Glucose

200 most important genes:

  gene name fitness t score description  
AO353_20540 -4.1 -9.9 aromatic amino acid aminotransferase compare
AO353_12690 -4.0 -1.3 acyl carrier protein compare
AO353_13070 -3.8 -11.0 phosphoserine phosphatase compare
AO353_23495 -3.8 -2.6 SAM-dependent methyltransferase compare
AO353_07220 -3.7 -5.6 anthranilate synthase compare
AO353_20620 -3.4 -6.1 isopropylmalate isomerase compare
AO353_20635 -3.3 -11.2 3-isopropylmalate dehydrogenase compare
AO353_09875 -3.2 -2.4 hypothetical protein compare
AO353_20625 -3.2 -5.2 3-isopropylmalate dehydratase compare
AO353_29215 -3.1 -3.4 alpha/beta hydrolase compare
AO353_02075 -3.0 -8.9 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_05110 -3.0 -9.6 histidinol dehydrogenase compare
AO353_12520 -3.0 -10.6 glutamate synthase compare
AO353_20665 -2.9 -9.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_13165 -2.9 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_12070 -2.9 -7.0 imidazoleglycerol-phosphate dehydratase compare
AO353_05115 -2.9 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_16155 -2.9 -3.9 antibiotic biosynthesis monooxygenase compare
AO353_15925 -2.8 -12.4 2-isopropylmalate synthase compare
AO353_27710 -2.8 -2.3 DNA repair protein compare
AO353_12085 -2.8 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20695 -2.8 -6.8 O-succinylhomoserine sulfhydrylase compare
AO353_14505 -2.8 -10.0 ketol-acid reductoisomerase compare
AO353_12515 -2.8 -16.6 glutamate synthase compare
AO353_00490 -2.7 -3.5 PasA protein compare
AO353_07230 -2.7 -14.1 anthranilate synthase compare
AO353_00310 -2.7 -9.1 transaldolase compare
AO353_08185 -2.7 -10.2 methionine biosynthesis protein MetW compare
AO353_12075 -2.7 -6.0 imidazole glycerol phosphate synthase subunit HisH compare
AO353_26945 -2.6 -2.6 transcriptional regulator compare
AO353_10670 -2.5 -4.5 shikimate dehydrogenase compare
AO353_08475 -2.5 -8.6 phosphoserine phosphatase compare
AO353_10235 -2.5 -9.2 glycosyltransferase compare
AO353_10030 -2.5 -8.9 pyruvate carboxylase subunit A compare
AO353_06455 -2.5 -1.7 D-alanyl-D-alanine carboxypeptidase compare
AO353_08180 -2.4 -11.4 homoserine O-acetyltransferase compare
AO353_13420 -2.4 -2.6 hypothetical protein compare
AO353_03100 -2.4 -2.9 XRE family transcriptional regulator compare
AO353_10035 -2.4 -8.2 LysR family transcriptional regulator compare
AO353_10230 -2.3 -10.8 glycosyltransferase compare
AO353_07215 -2.3 -6.8 anthranilate phosphoribosyltransferase compare
AO353_14500 -2.3 -3.2 acetolactate synthase 3 regulatory subunit compare
AO353_04155 -2.3 -9.7 ornithine carbamoyltransferase compare
AO353_10710 -2.3 -3.8 tryptophan synthase subunit beta compare
AO353_09045 -2.3 -2.2 hypothetical protein compare
AO353_21455 -2.3 -1.8 cation:proton antiporter compare
AO353_11850 -2.3 -5.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_08780 -2.3 -6.9 5-formyltetrahydrofolate cyclo-ligase compare
AO353_02070 -2.3 -5.2 prephenate dehydratase compare
AO353_10025 -2.2 -12.9 pyruvate carboxylase subunit B compare
AO353_09285 -2.2 -10.2 reactive intermediate/imine deaminase compare
AO353_08345 -2.2 -8.1 dihydroxy-acid dehydratase compare
AO353_02685 -2.2 -3.2 phosphoribosylglycinamide formyltransferase compare
AO353_06460 -2.2 -8.0 hypothetical protein compare
AO353_17445 -2.1 -3.0 hypothetical protein compare
AO353_15900 -2.1 -2.8 GTP-binding protein compare
AO353_01375 -2.1 -5.4 phosphate acyltransferase compare
AO353_04105 -2.1 -5.4 argininosuccinate synthase compare
AO353_06415 -2.1 -2.8 hypothetical protein compare
AO353_07210 -2.1 -5.2 indole-3-glycerol-phosphate synthase compare
AO353_07555 -2.0 -3.6 glycine cleavage system protein R compare
AO353_12055 -2.0 -4.8 cell envelope biogenesis protein AsmA compare
AO353_12090 -2.0 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
AO353_05080 -2.0 -9.7 sulfate adenylyltransferase compare
AO353_17675 -2.0 -5.5 hypothetical protein compare
AO353_19090 -2.0 -1.3 MarR family transcriptional regulator compare
AO353_03630 -2.0 -10.2 porin compare
AO353_19605 -1.9 -2.4 hypothetical protein compare
AO353_20565 -1.9 -1.3 tRNA-Ala compare
AO353_22280 -1.9 -2.8 hypothetical protein compare
AO353_09720 -1.9 -1.1 hypothetical protein compare
AO353_14595 -1.9 -8.6 carbonate dehydratase compare
AO353_02970 -1.9 -2.9 carbon storage regulator compare
AO353_03290 -1.9 -2.1 peptide deformylase compare
AO353_09135 -1.9 -1.3 cytochrome C compare
AO353_16425 -1.9 -1.7 Fe-S metabolism protein SufE compare
AO353_20660 -1.9 -3.7 pseudouridine synthase compare
AO353_03020 -1.8 -5.9 arginine N-succinyltransferase compare
AO353_03245 -1.8 -6.3 permease DsdX compare
AO353_03360 -1.8 -6.6 glucose-6-phosphate dehydrogenase compare
AO353_27680 -1.8 -5.7 ATP-dependent Clp protease adaptor ClpS compare
AO353_08620 -1.8 -1.7 hypothetical protein compare
AO353_12360 -1.7 -7.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_24405 -1.7 -2.2 ArsR family transcriptional regulator compare
AO353_19000 -1.7 -3.0 ABC transporter compare
AO353_03670 -1.7 -2.8 ornithine acetyltransferase compare
AO353_00955 -1.7 -2.4 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_03420 -1.7 -3.2 phosphogluconate dehydratase compare
AO353_05280 -1.7 -2.6 4-carboxymuconolactone decarboxylase compare
AO353_08015 -1.7 -4.7 5,10-methylenetetrahydrofolate reductase compare
AO353_27675 -1.7 -6.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_02010 -1.7 -5.5 glycosyl transferase family 1 compare
AO353_00495 -1.7 -1.6 DNA topoisomerase I compare
AO353_00455 -1.7 -2.5 beta-hexosaminidase compare
AO353_11165 -1.6 -7.8 hypothetical protein compare
AO353_15830 -1.6 -2.2 transcriptional regulator compare
AO353_22810 -1.6 -1.2 hypothetical protein compare
AO353_14115 -1.6 -5.7 gamma-glutamyl kinase compare
AO353_22800 -1.6 -2.4 sulfite reductase compare
AO353_03425 -1.6 -6.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_05105 -1.6 -7.9 histidinol-phosphate aminotransferase compare
AO353_14385 -1.6 -3.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO353_08775 -1.6 -1.8 cell division protein ZapA compare
AO353_00655 -1.5 -6.6 coproporphyrinogen III oxidase compare
AO353_12710 -1.5 -1.3 thioredoxin compare
AO353_14380 -1.5 -3.2 pantoate--beta-alanine ligase compare
AO353_12790 -1.5 -1.6 hypothetical protein compare
AO353_20680 -1.5 -3.2 cell division protein compare
AO353_08505 -1.5 -7.9 FAD-linked oxidase compare
AO353_10875 -1.5 -4.4 copper-binding protein compare
AO353_12270 -1.5 -3.2 histidine ammonia-lyase compare
AO353_16980 -1.5 -2.4 isochorismatase compare
AO353_07315 -1.5 -2.3 rRNA methyltransferase compare
AO353_05075 -1.5 -6.2 adenylylsulfate kinase compare
AO353_28380 -1.5 -2.3 GntR family transcriptional regulator compare
AO353_00345 -1.5 -4.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO353_12390 -1.5 -2.2 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_19530 -1.5 -1.3 quinohemoprotein amine dehydrogenase compare
AO353_01985 -1.4 -7.0 hypothetical protein compare
AO353_20200 -1.4 -3.4 peptidylprolyl isomerase compare
AO353_02515 -1.4 -4.9 recombination-associated protein RdgC compare
AO353_11720 -1.4 -2.1 taurine transporter ATP-binding subunit compare
AO353_16440 -1.4 -3.7 ArsC family transcriptional regulator compare
AO353_12455 -1.4 -2.4 nuclease compare
AO353_14150 -1.4 -2.0 peptidylprolyl isomerase compare
AO353_12365 -1.4 -2.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_20115 -1.4 -2.2 LysR family transcriptional regulator compare
AO353_17035 -1.4 -3.3 hypothetical protein compare
AO353_16805 -1.4 -3.6 recombinase RecA compare
AO353_07075 -1.4 -1.8 elongation factor Tu compare
AO353_15250 -1.4 -0.9 cytochrome B compare
AO353_03585 -1.4 -2.0 ATP-dependent DNA helicase RuvA compare
AO353_03295 -1.4 -8.2 ribonuclease BN compare
AO353_08650 -1.4 -2.4 aliphatic sulfonate ABC transporter ATP-binding protein compare
AO353_15490 -1.3 -1.5 hypothetical protein compare
AO353_13940 -1.3 -4.3 cytochrome D ubiquinol oxidase subunit I compare
AO353_02710 -1.3 -5.2 (p)ppGpp synthetase compare
AO353_02440 -1.3 -7.4 peptidase S41 compare
AO353_10170 -1.3 -7.1 fatty acid methyltransferase compare
AO353_14495 -1.3 -5.0 acetolactate synthase 3 catalytic subunit compare
AO353_27090 -1.3 -1.9 hypothetical protein compare
AO353_04565 -1.3 -3.9 nucleoid-associated protein compare
AO353_02040 -1.3 -2.1 integration host factor subunit beta compare
AO353_09490 -1.3 -2.2 hypothetical protein compare
AO353_08265 -1.3 -3.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_18285 -1.3 -2.2 3-phosphoglycerate kinase compare
AO353_07615 -1.3 -2.8 hypothetical protein compare
AO353_26280 -1.3 -1.9 peptidase M48, Ste24p compare
AO353_03770 -1.3 -3.4 hypothetical protein compare
AO353_24260 -1.3 -1.6 hypothetical protein compare
AO353_02595 -1.3 -1.7 cobalamin synthase compare
AO353_01990 -1.3 -4.2 UDP-N-acetylglucosamine 2-epimerase compare
AO353_16940 -1.3 -3.3 deoxycytidine triphosphate deaminase compare
AO353_20340 -1.3 -2.6 gamma-carboxygeranoyl-CoA hydratase compare
AO353_03775 -1.3 -5.7 pyruvate kinase compare
AO353_12990 -1.3 -2.7 multidrug DMT transporter compare
AO353_08685 -1.3 -2.9 N-acetylglutamate synthase compare
AO353_10055 -1.3 -6.6 DNA helicase II compare
AO353_08485 -1.3 -8.2 threonine dehydratase compare
AO353_22780 -1.3 -3.1 phosphoglycerate mutase compare
AO353_02940 -1.3 -1.5 DNA-binding protein compare
AO353_02005 -1.2 -1.3 hypothetical protein compare
AO353_18715 -1.2 -1.0 histidine kinase compare
AO353_13715 -1.2 -2.9 translation initiation factor Sui1 compare
AO353_17645 -1.2 -6.3 peptidase M48 compare
AO353_27335 -1.2 -1.8 hypothetical protein compare
AO353_24340 -1.2 -1.6 TetR family transcriptional regulator compare
AO353_09400 -1.2 -2.8 hypothetical protein compare
AO353_12835 -1.2 -2.7 hypothetical protein compare
AO353_14485 -1.2 -0.9 pseudouridine synthase compare
AO353_10630 -1.2 -3.6 16S rRNA methyltransferase compare
AO353_24625 -1.2 -2.5 hypothetical protein compare
AO353_02025 -1.2 -6.0 mannose-1-phosphate guanyltransferase compare
AO353_28055 -1.2 -2.4 hypothetical protein compare
AO353_00185 -1.2 -1.4 phage tail protein compare
AO353_19060 -1.2 -3.9 CysB family transcriptional regulator compare
AO353_26400 -1.2 -2.6 hypothetical protein compare
AO353_24135 -1.2 -1.8 hypothetical protein compare
AO353_13220 -1.2 -4.5 hypothetical protein compare
AO353_09235 -1.2 -5.0 phosphoglucomutase compare
AO353_15185 -1.2 -2.8 ATPase compare
AO353_12930 -1.2 -2.1 GlcNAc-PI de-N-acetylase compare
AO353_18335 -1.2 -1.7 hypothetical protein compare
AO353_02720 -1.2 -3.9 cysteine synthase compare
AO353_09000 -1.2 -2.3 argininosuccinate lyase compare
AO353_21615 -1.2 -7.3 methionine synthase compare
AO353_23955 -1.2 -2.0 RND transporter compare
AO353_01975 -1.2 -5.3 glycosyl transferase compare
AO353_27185 -1.2 -2.9 hypothetical protein compare
AO353_19310 -1.2 -1.7 enoyl-CoA hydratase compare
AO353_09890 -1.2 -1.9 phosphate ABC transporter ATP-binding protein compare
AO353_16380 -1.1 -2.4 hypothetical protein compare
AO353_20335 -1.1 -3.1 3-methylcrotonyl-CoA carboxylase compare
AO353_01035 -1.1 -2.1 hypothetical protein compare
AO353_16265 -1.1 -3.6 Fis family transcriptional regulator compare
AO353_05880 -1.1 -1.1 plasmid stabilization protein compare
AO353_03415 -1.1 -3.7 glucokinase compare
AO353_01015 -1.1 -1.5 hypothetical protein compare
AO353_00520 -1.1 -2.9 universal stress protein UspA compare
AO353_12420 -1.1 -1.6 predicted FeS cluster maintenance protein (from data) compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Glucose in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Glucose across organisms