Experiment set15IT090 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Citrulline

200 most important genes:

  gene name fitness t score description  
AO353_02995 -4.1 -9.2 succinylglutamate desuccinylase compare
AO353_02040 -3.7 -2.6 integration host factor subunit beta compare
AO353_16835 -3.7 -2.4 LuxR family transcriptional regulator compare
AO353_20625 -3.6 -2.5 3-isopropylmalate dehydratase compare
AO353_11850 -3.4 -4.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_06710 -3.4 -1.9 riboflavin synthase subunit alpha compare
AO353_25635 -3.4 -6.4 citrulline utilization hydrolase (from data) conserved
AO353_13070 -3.3 -10.3 phosphoserine phosphatase compare
AO353_03035 -3.3 -3.9 AraC family transcriptional regulator compare
AO353_25640 -3.3 -2.2 AsnC family transcriptional regulator compare
AO353_20635 -3.2 -9.3 3-isopropylmalate dehydrogenase compare
AO353_20660 -3.2 -2.2 pseudouridine synthase compare
AO353_08475 -3.2 -5.3 phosphoserine phosphatase compare
AO353_20665 -3.1 -7.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_13165 -3.1 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20695 -3.1 -5.6 O-succinylhomoserine sulfhydrylase compare
AO353_08185 -3.1 -7.5 methionine biosynthesis protein MetW compare
AO353_27155 -3.1 -2.7 hypothetical protein compare
AO353_25630 -3.1 -8.2 arginine N-succinyltransferase compare
AO353_20540 -3.1 -7.6 aromatic amino acid aminotransferase compare
AO353_18005 -3.0 -4.9 allophanate hydrolase compare
AO353_15925 -3.0 -10.1 2-isopropylmalate synthase compare
AO353_16195 -2.9 -1.8 DNA mismatch repair protein MutT compare
AO353_08180 -2.9 -8.7 homoserine O-acetyltransferase compare
AO353_07230 -2.9 -11.7 anthranilate synthase compare
AO353_05115 -2.8 -7.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_11775 -2.8 -5.0 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_22375 -2.8 -3.8 cytochrome c-550 PedF compare
AO353_12085 -2.8 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07220 -2.8 -6.2 anthranilate synthase compare
AO353_22800 -2.8 -1.9 sulfite reductase compare
AO353_12070 -2.7 -6.3 imidazoleglycerol-phosphate dehydratase compare
AO353_14505 -2.7 -7.7 ketol-acid reductoisomerase compare
AO353_14595 -2.7 -8.1 carbonate dehydratase compare
AO353_12090 -2.7 -1.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_02075 -2.6 -7.9 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20620 -2.6 -5.8 isopropylmalate isomerase compare
AO353_08345 -2.6 -7.3 dihydroxy-acid dehydratase compare
AO353_07560 -2.6 -11.2 malate synthase G compare
AO353_01350 -2.6 -5.8 4-amino-4-deoxychorismate lyase compare
AO353_25645 -2.6 -6.2 amino acid transporter conserved
AO353_01550 -2.6 -3.9 hypothetical protein compare
AO353_21355 -2.6 -2.4 xylose isomerase compare
AO353_05110 -2.6 -8.8 histidinol dehydrogenase compare
AO353_03025 -2.5 -3.5 acetylornithine aminotransferase compare
AO353_07215 -2.5 -5.7 anthranilate phosphoribosyltransferase compare
AO353_02685 -2.4 -2.8 phosphoribosylglycinamide formyltransferase compare
AO353_05520 -2.4 -4.4 nicotinate-nucleotide pyrophosphorylase compare
AO353_02070 -2.4 -3.6 prephenate dehydratase compare
AO353_22930 -2.4 -2.8 hypothetical protein compare
AO353_21935 -2.4 -2.3 nitrite reductase compare
AO353_01915 -2.4 -1.9 GlcG protein compare
AO353_10710 -2.3 -2.2 tryptophan synthase subunit beta compare
AO353_10025 -2.3 -12.3 pyruvate carboxylase subunit B compare
AO353_12075 -2.3 -5.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_03130 -2.3 -2.8 hypothetical protein compare
AO353_27675 -2.2 -8.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_16040 -2.2 -2.2 hypothetical protein compare
AO353_10235 -2.2 -7.4 glycosyltransferase compare
AO353_05105 -2.2 -8.4 histidinol-phosphate aminotransferase compare
AO353_03630 -2.2 -8.5 porin compare
AO353_25845 -2.2 -2.4 GNAT family acetyltransferase compare
AO353_00865 -2.2 -8.0 phosphoenolpyruvate synthase compare
AO353_06725 -2.2 -1.9 hypothetical protein compare
AO353_08780 -2.2 -5.9 5-formyltetrahydrofolate cyclo-ligase compare
AO353_12790 -2.1 -2.1 hypothetical protein compare
AO353_28700 -2.1 -3.2 hypothetical protein compare
AO353_03055 -2.1 -6.4 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) compare
AO353_29165 -2.1 -3.2 fructose-bisphosphate aldolase compare
AO353_06460 -2.1 -7.0 hypothetical protein compare
AO353_08885 -2.1 -15.6 polyphosphate kinase compare
AO353_20815 -2.1 -3.1 LacI family transcriptional regulator compare
AO353_05080 -2.1 -8.3 sulfate adenylyltransferase compare
AO353_02015 -2.1 -6.8 acetyltransferase compare
AO353_14795 -2.1 -4.5 molybdopterin-synthase adenylyltransferase compare
AO353_24600 -2.0 -3.0 hypothetical protein compare
AO353_01375 -2.0 -6.0 phosphate acyltransferase compare
AO353_28295 -2.0 -2.6 GNAT family acetyltransferase compare
AO353_03060 -2.0 -15.3 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) compare
AO353_22820 -2.0 -13.2 NAD-glutamate dehydrogenase compare
AO353_20200 -2.0 -3.3 peptidylprolyl isomerase compare
AO353_10230 -2.0 -9.2 glycosyltransferase compare
AO353_04810 -2.0 -1.2 hypothetical protein compare
AO353_10985 -2.0 -2.2 hypothetical protein compare
AO353_00430 -2.0 -2.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_07210 -2.0 -4.5 indole-3-glycerol-phosphate synthase compare
AO353_12360 -2.0 -6.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_07555 -2.0 -3.2 glycine cleavage system protein R compare
AO353_15490 -2.0 -1.5 hypothetical protein compare
AO353_09720 -1.9 -1.4 hypothetical protein compare
AO353_08510 -1.9 -1.9 3-phosphoglycerate dehydrogenase compare
AO353_03585 -1.9 -3.0 ATP-dependent DNA helicase RuvA compare
AO353_10670 -1.9 -4.3 shikimate dehydrogenase compare
AO353_27650 -1.9 -3.9 cell division protein FtsK compare
AO353_15830 -1.9 -2.5 transcriptional regulator compare
AO353_17990 -1.9 -4.9 MFS transporter compare
AO353_14940 -1.9 -2.2 malate:quinone oxidoreductase compare
AO353_12565 -1.8 -2.3 type II secretion system protein GspH compare
AO353_12390 -1.8 -3.0 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_08015 -1.8 -2.8 5,10-methylenetetrahydrofolate reductase compare
AO353_03010 -1.8 -4.7 succinylglutamate-semialdehyde dehydrogenase compare
AO353_11750 -1.8 -1.2 ATPase compare
AO353_09285 -1.8 -8.3 reactive intermediate/imine deaminase compare
AO353_06455 -1.8 -1.7 D-alanyl-D-alanine carboxypeptidase compare
AO353_26795 -1.8 -3.7 NAD-dependent deacetylase compare
AO353_03210 -1.8 -2.8 GNAT family acetyltransferase compare
AO353_07295 -1.8 -10.2 aminoglycoside phosphotransferase compare
AO353_04105 -1.8 -5.6 argininosuccinate synthase compare
AO353_00510 -1.8 -5.5 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_05325 -1.7 -4.6 GntR family transcriptional regulator compare
AO353_18560 -1.7 -1.7 class I peptide chain release factor compare
AO353_10035 -1.7 -6.1 LysR family transcriptional regulator compare
AO353_03295 -1.7 -9.2 ribonuclease BN compare
AO353_20115 -1.7 -2.3 LysR family transcriptional regulator compare
AO353_29145 -1.7 -3.2 HxlR family transcriptional regulator compare
AO353_20175 -1.7 -1.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_15900 -1.7 -1.8 GTP-binding protein compare
AO353_21250 -1.6 -4.7 peptidase compare
AO353_09475 -1.6 -2.3 hypothetical protein compare
AO353_10030 -1.6 -6.9 pyruvate carboxylase subunit A compare
AO353_27135 -1.6 -3.5 hypothetical protein compare
AO353_09040 -1.6 -0.9 diaminopimelate epimerase compare
AO353_00520 -1.6 -3.3 universal stress protein UspA compare
AO353_03580 -1.6 -2.4 ATP-dependent DNA helicase RuvB compare
AO353_03605 -1.6 -0.8 FmdB family transcriptional regulator compare
AO353_23945 -1.6 -1.4 hypothetical protein compare
AO353_13580 -1.6 -1.9 copper resistance protein CopZ compare
AO353_07575 -1.6 -4.7 DNA polymerase III subunit epsilon compare
AO353_05075 -1.6 -7.4 adenylylsulfate kinase compare
AO353_20860 -1.6 -1.8 hypothetical protein compare
AO353_10630 -1.6 -3.6 16S rRNA methyltransferase compare
AO353_01985 -1.6 -7.1 hypothetical protein compare
AO353_17995 -1.6 -5.2 hypothetical protein compare
AO353_09875 -1.6 -1.4 hypothetical protein compare
AO353_21595 -1.6 -5.6 serine/threonine protein kinase compare
AO353_27585 -1.6 -2.4 DNA repair protein compare
AO353_21940 -1.6 -3.2 protein nirG compare
AO353_10170 -1.5 -6.4 fatty acid methyltransferase compare
AO353_08350 -1.5 -5.7 hypothetical protein compare
AO353_24745 -1.5 -1.6 hypothetical protein compare
AO353_00610 -1.5 -0.9 cytochrome C oxidase Cbb3 compare
AO353_12345 -1.5 -1.0 twin-arginine protein translocation system subunit TatC compare
AO353_12055 -1.5 -4.3 cell envelope biogenesis protein AsmA compare
AO353_08910 -1.5 -1.4 hypothetical protein compare
AO353_04075 -1.5 -5.1 electron transporter RnfG compare
AO353_09135 -1.5 -1.0 cytochrome C compare
AO353_06415 -1.5 -3.0 hypothetical protein compare
AO353_27335 -1.5 -1.7 hypothetical protein compare
AO353_13925 -1.5 -1.3 XRE family transcriptional regulator compare
AO353_27550 -1.5 -1.2 hypothetical protein compare
AO353_26125 -1.5 -1.9 hypothetical protein compare
AO353_04230 -1.5 -2.4 chemotaxis protein CheW compare
AO353_07290 -1.5 -6.8 mannose-1-phosphate guanylyltransferase compare
AO353_23495 -1.5 -1.4 SAM-dependent methyltransferase compare
AO353_06100 -1.5 -1.3 thymidylate synthase compare
AO353_03590 -1.5 -1.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_00495 -1.5 -1.3 DNA topoisomerase I compare
AO353_05510 -1.5 -5.6 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO353_28680 -1.5 -3.0 transposase compare
AO353_27735 -1.5 -6.2 isocitrate lyase compare
AO353_11165 -1.5 -7.1 hypothetical protein compare
AO353_14495 -1.5 -4.1 acetolactate synthase 3 catalytic subunit compare
AO353_17520 -1.4 -2.1 hypothetical protein compare
AO353_15825 -1.4 -2.8 serine acetyltransferase compare
AO353_08265 -1.4 -2.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_27680 -1.4 -3.3 ATP-dependent Clp protease adaptor ClpS compare
AO353_15410 -1.4 -1.4 hypothetical protein compare
AO353_15730 -1.4 -1.9 hypothetical protein compare
AO353_04665 -1.4 -7.4 ATPase compare
AO353_19015 -1.4 -7.5 hypothetical protein compare
AO353_01355 -1.4 -3.7 3-oxoacyl-ACP synthase compare
AO353_01990 -1.4 -4.1 UDP-N-acetylglucosamine 2-epimerase compare
AO353_26100 -1.4 -1.5 lysozyme compare
AO353_01105 -1.4 -3.7 hypothetical protein compare
AO353_13390 -1.4 -6.4 N-acylglucosamine 2-epimerase compare
AO353_12365 -1.4 -2.5 phosphoribosyl-AMP cyclohydrolase compare
AO353_00655 -1.4 -5.7 coproporphyrinogen III oxidase compare
AO353_10875 -1.4 -3.5 copper-binding protein compare
AO353_14500 -1.4 -4.1 acetolactate synthase 3 regulatory subunit compare
AO353_01975 -1.4 -5.4 glycosyl transferase compare
AO353_13420 -1.3 -1.6 hypothetical protein compare
AO353_17180 -1.3 -3.5 hypothetical protein compare
AO353_28425 -1.3 -2.3 TetR family transcriptional regulator compare
AO353_19325 -1.3 -4.4 2,4-dienoyl-CoA reductase compare
AO353_01685 -1.3 -1.4 hypothetical protein compare
AO353_17675 -1.3 -3.4 hypothetical protein compare
AO353_19810 -1.3 -1.9 filamentous hemagglutinin compare
AO353_28965 -1.3 -3.0 hypothetical protein compare
AO353_12940 -1.3 -4.6 glycosyl transferase compare
AO353_23620 -1.3 -1.7 hypothetical protein compare
AO353_14395 -1.3 -2.7 poly(A) polymerase compare
AO353_12460 -1.3 -4.3 malate dehydrogenase compare
AO353_20185 -1.3 -3.5 DNA-binding protein compare
AO353_18780 -1.3 -3.8 cobyrinic acid a,c-diamide synthase compare
AO353_04220 -1.3 -3.7 chemotaxis protein CheY compare
AO353_23270 -1.3 -2.0 hypothetical protein compare
AO353_12510 -1.3 -7.1 cell division protein compare
AO353_20785 -1.3 -3.3 carbon storage regulator CsrA compare
AO353_10045 -1.3 -3.5 hypothetical protein compare
AO353_10730 -1.3 -0.9 hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source L-Citrulline in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Citrulline across organisms