Experiment set15IT087 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Ornithine

200 most important genes:

  gene name fitness t score description  
AO353_02995 -4.4 -9.3 succinylglutamate desuccinylase compare
AO353_09045 -4.3 -2.4 hypothetical protein compare
AO353_01350 -3.9 -2.7 4-amino-4-deoxychorismate lyase compare
AO353_11340 -3.7 -2.4 MarR family transcriptional regulator compare
AO353_03035 -3.6 -3.5 AraC family transcriptional regulator compare
AO353_13070 -3.5 -11.0 phosphoserine phosphatase compare
AO353_20635 -3.4 -9.6 3-isopropylmalate dehydrogenase compare
AO353_05115 -3.4 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20540 -3.4 -10.0 aromatic amino acid aminotransferase compare
AO353_02075 -3.3 -6.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_11850 -3.3 -5.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_22820 -3.3 -17.1 NAD-glutamate dehydrogenase compare
AO353_25630 -3.2 -8.7 arginine N-succinyltransferase compare
AO353_07215 -3.2 -4.3 anthranilate phosphoribosyltransferase compare
AO353_07210 -3.2 -3.8 indole-3-glycerol-phosphate synthase compare
AO353_20625 -3.2 -4.3 3-isopropylmalate dehydratase compare
AO353_20695 -3.1 -6.0 O-succinylhomoserine sulfhydrylase compare
AO353_07230 -3.1 -13.3 anthranilate synthase compare
AO353_12070 -3.1 -6.3 imidazoleglycerol-phosphate dehydratase compare
AO353_12085 -3.1 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_14595 -3.0 -8.5 carbonate dehydratase compare
AO353_07220 -3.0 -7.0 anthranilate synthase compare
AO353_20620 -3.0 -6.3 isopropylmalate isomerase compare
AO353_08465 -3.0 -23.9 phosphoenolpyruvate-protein phosphotransferase compare
AO353_27650 -2.9 -3.4 cell division protein FtsK compare
AO353_14505 -2.9 -8.7 ketol-acid reductoisomerase compare
AO353_12075 -2.8 -5.4 imidazole glycerol phosphate synthase subunit HisH compare
AO353_00520 -2.7 -4.9 universal stress protein UspA compare
AO353_03025 -2.7 -4.0 acetylornithine aminotransferase compare
AO353_08185 -2.7 -9.7 methionine biosynthesis protein MetW compare
AO353_08130 -2.7 -1.8 uracil phosphoribosyltransferase compare
AO353_08180 -2.7 -10.9 homoserine O-acetyltransferase compare
AO353_05110 -2.6 -10.2 histidinol dehydrogenase compare
AO353_13165 -2.6 -5.3 ATP phosphoribosyltransferase regulatory subunit compare
AO353_27680 -2.5 -6.4 ATP-dependent Clp protease adaptor ClpS compare
AO353_08345 -2.5 -8.3 dihydroxy-acid dehydratase compare
AO353_15925 -2.5 -11.4 2-isopropylmalate synthase compare
AO353_20665 -2.5 -8.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_02000 -2.5 -2.9 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_10230 -2.4 -10.9 glycosyltransferase compare
AO353_10320 -2.4 -1.7 hypothetical protein compare
AO353_08885 -2.4 -17.9 polyphosphate kinase compare
AO353_22800 -2.4 -2.8 sulfite reductase compare
AO353_10035 -2.4 -8.0 LysR family transcriptional regulator compare
AO353_10710 -2.4 -3.6 tryptophan synthase subunit beta compare
AO353_01210 -2.4 -12.5 GntR family transcriptional regulator compare
AO353_21905 -2.3 -3.5 hypothetical protein compare
AO353_04155 -2.3 -9.6 ornithine carbamoyltransferase compare
AO353_10235 -2.3 -10.0 glycosyltransferase compare
AO353_12360 -2.2 -7.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_03630 -2.2 -9.7 porin compare
AO353_00495 -2.2 -1.5 DNA topoisomerase I compare
AO353_07445 -2.2 -1.5 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_11775 -2.2 -6.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_10670 -2.1 -5.1 shikimate dehydrogenase compare
AO353_02640 -2.1 -1.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_11750 -2.1 -1.4 ATPase compare
AO353_03010 -2.1 -4.3 succinylglutamate-semialdehyde dehydrogenase compare
AO353_04105 -2.1 -5.2 argininosuccinate synthase compare
AO353_06460 -2.1 -6.8 hypothetical protein compare
AO353_03580 -2.1 -1.4 ATP-dependent DNA helicase RuvB compare
AO353_14500 -2.1 -3.9 acetolactate synthase 3 regulatory subunit compare
AO353_01795 -2.1 -2.4 hypothetical protein compare
AO353_07315 -2.0 -2.6 rRNA methyltransferase compare
AO353_08510 -2.0 -2.7 3-phosphoglycerate dehydrogenase compare
AO353_06325 -2.0 -2.6 hypothetical protein compare
AO353_08780 -2.0 -6.5 5-formyltetrahydrofolate cyclo-ligase compare
AO353_12365 -2.0 -3.4 phosphoribosyl-AMP cyclohydrolase compare
AO353_27090 -2.0 -2.5 hypothetical protein compare
AO353_01080 -1.9 -7.8 hypothetical protein compare
AO353_05800 -1.9 -4.7 hypothetical protein compare
AO353_10730 -1.9 -1.5 hypothetical protein compare
AO353_10030 -1.9 -8.5 pyruvate carboxylase subunit A compare
AO353_28700 -1.9 -2.6 hypothetical protein compare
AO353_12930 -1.9 -2.2 GlcNAc-PI de-N-acetylase compare
AO353_00655 -1.9 -6.0 coproporphyrinogen III oxidase compare
AO353_27675 -1.9 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_20425 -1.9 -3.0 ArsC family transcriptional regulator compare
AO353_12345 -1.9 -1.3 twin-arginine protein translocation system subunit TatC compare
AO353_03295 -1.9 -11.1 ribonuclease BN compare
AO353_10025 -1.9 -10.4 pyruvate carboxylase subunit B compare
AO353_19605 -1.8 -2.3 hypothetical protein compare
AO353_21655 -1.8 -2.3 cobalamin biosynthesis protein CobW compare
AO353_07645 -1.8 -1.4 sarcosine oxidase subunit gamma compare
AO353_27995 -1.8 -3.8 RpiR family transcriptional regulator compare
AO353_12535 -1.8 -3.5 hypothetical protein compare
AO353_13160 -1.8 -1.7 membrane protease HflC compare
AO353_17940 -1.8 -3.4 hypothetical protein compare
AO353_14380 -1.8 -3.9 pantoate--beta-alanine ligase compare
AO353_11165 -1.8 -8.5 hypothetical protein compare
AO353_20565 -1.8 -1.2 tRNA-Ala compare
AO353_23400 -1.8 -2.5 hypothetical protein compare
AO353_12810 -1.8 -11.5 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) conserved
AO353_09700 -1.8 -5.4 hypothetical protein compare
AO353_00865 -1.7 -7.8 phosphoenolpyruvate synthase compare
AO353_08475 -1.7 -6.8 phosphoserine phosphatase compare
AO353_09320 -1.7 -8.0 ATP-dependent DNA helicase RecG compare
AO353_15900 -1.7 -2.2 GTP-binding protein compare
AO353_20510 -1.7 -1.9 amidase compare
AO353_08015 -1.7 -4.7 5,10-methylenetetrahydrofolate reductase compare
AO353_07560 -1.7 -9.6 malate synthase G compare
AO353_03585 -1.7 -2.6 ATP-dependent DNA helicase RuvA compare
AO353_13930 -1.7 -6.1 Killer protein compare
AO353_15295 -1.6 -5.5 division/cell wall cluster transcriptional repressor MraZ compare
AO353_04500 -1.6 -1.9 DNA repair protein RecO compare
AO353_13940 -1.6 -5.4 cytochrome D ubiquinol oxidase subunit I compare
AO353_01965 -1.6 -4.2 competence protein ComEA compare
AO353_03015 -1.6 -3.3 arginine N-succinyltransferase compare
AO353_07785 -1.6 -4.8 ABC transporter for Carnitine, permease component (from data) compare
AO353_25635 -1.6 -4.2 citrulline utilization hydrolase (from data) conserved
AO353_28320 -1.6 -2.7 aminopeptidase compare
AO353_25185 -1.6 -6.1 ornithine cyclodeaminase conserved
AO353_00605 -1.6 -4.4 cytochrome C oxidase Cbb3 compare
AO353_10240 -1.5 -3.8 NAD-dependent dehydratase compare
AO353_04365 -1.5 -3.9 recombinase XerD compare
AO353_25190 -1.5 -6.4 amino acid transporter compare
AO353_16440 -1.5 -3.4 ArsC family transcriptional regulator compare
AO353_02070 -1.5 -5.0 prephenate dehydratase compare
AO353_16425 -1.5 -1.1 Fe-S metabolism protein SufE compare
AO353_09345 -1.5 -2.4 hypothetical protein compare
AO353_12690 -1.5 -1.0 acyl carrier protein compare
AO353_20840 -1.5 -2.3 ribose pyranase compare
AO353_08505 -1.5 -7.3 FAD-linked oxidase compare
AO353_02175 -1.5 -1.7 carbon storage regulator compare
AO353_10875 -1.5 -4.0 copper-binding protein compare
AO353_18715 -1.5 -1.4 histidine kinase compare
AO353_16835 -1.5 -1.5 LuxR family transcriptional regulator compare
AO353_03370 -1.5 -3.7 aldose epimerase compare
AO353_02970 -1.5 -2.2 carbon storage regulator compare
AO353_20185 -1.5 -4.0 DNA-binding protein compare
AO353_10780 -1.5 -1.5 DNA-binding protein compare
AO353_12390 -1.4 -2.9 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_09395 -1.4 -3.2 type VI secretion protein compare
AO353_14940 -1.4 -2.3 malate:quinone oxidoreductase compare
AO353_01410 -1.4 -1.0 ribonuclease E compare
AO353_19090 -1.4 -1.3 MarR family transcriptional regulator compare
AO353_19505 -1.4 -2.3 FAD-dependent oxidoreductase compare
AO353_27685 -1.4 -2.3 cold-shock protein compare
AO353_15830 -1.4 -2.0 transcriptional regulator compare
AO353_26055 -1.4 -2.2 hypothetical protein compare
AO353_12090 -1.4 -1.3 imidazole glycerol phosphate synthase subunit HisF compare
AO353_22280 -1.4 -1.8 hypothetical protein compare
AO353_20660 -1.4 -2.8 pseudouridine synthase compare
AO353_18130 -1.4 -2.5 hypothetical protein compare
AO353_02550 -1.4 -2.9 TetR family transcriptional regulator compare
AO353_22950 -1.4 -2.2 universal stress protein UspA compare
AO353_03100 -1.4 -1.8 XRE family transcriptional regulator compare
AO353_19145 -1.4 -3.9 protease HtpX compare
AO353_01550 -1.4 -4.2 hypothetical protein compare
AO353_01970 -1.4 -6.7 hypothetical protein compare
AO353_17645 -1.4 -6.6 peptidase M48 compare
AO353_26080 -1.4 -1.6 hypothetical protein compare
AO353_02015 -1.4 -4.6 acetyltransferase compare
AO353_01375 -1.4 -3.9 phosphate acyltransferase compare
AO353_25575 -1.4 -2.9 GNAT family acetyltransferase compare
AO353_12015 -1.4 -1.5 antitoxin compare
AO353_01985 -1.4 -6.2 hypothetical protein compare
AO353_10170 -1.3 -7.3 fatty acid methyltransferase compare
AO353_08165 -1.3 -2.0 pyrroline-5-carboxylate reductase compare
AO353_15250 -1.3 -0.9 cytochrome B compare
AO353_25175 -1.3 -3.4 AsnC family transcriptional regulator compare
AO353_01355 -1.3 -4.2 3-oxoacyl-ACP synthase compare
AO353_14400 -1.3 -1.3 Fis family transcriptional regulator compare
AO353_01975 -1.3 -5.6 glycosyl transferase compare
AO353_12240 -1.3 -4.4 histidine utilization repressor compare
AO353_10755 -1.3 -3.5 hypothetical protein compare
AO353_15725 -1.3 -3.1 hypothetical protein compare
AO353_00515 -1.3 -2.1 hypothetical protein compare
AO353_28565 -1.3 -2.4 hypothetical protein compare
AO353_24340 -1.3 -1.5 TetR family transcriptional regulator compare
AO353_08100 -1.3 -2.5 chemotaxis protein CheY compare
AO353_09235 -1.3 -4.4 phosphoglucomutase compare
AO353_16040 -1.3 -1.5 hypothetical protein compare
AO353_03660 -1.2 -3.5 hypothetical protein compare
AO353_24130 -1.2 -2.3 hypothetical protein compare
AO353_22350 -1.2 -3.4 LuxR family transcriptional regulator compare
AO353_25845 -1.2 -1.5 GNAT family acetyltransferase compare
AO353_18780 -1.2 -3.8 cobyrinic acid a,c-diamide synthase compare
AO353_00810 -1.2 -1.8 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_10055 -1.2 -6.2 DNA helicase II compare
AO353_09885 -1.2 -1.6 transcriptional regulator PhoU compare
AO353_28380 -1.2 -2.0 GntR family transcriptional regulator compare
AO353_14495 -1.2 -4.8 acetolactate synthase 3 catalytic subunit compare
AO353_01995 -1.2 -7.0 hypothetical protein compare
AO353_25050 -1.2 -3.2 AraC family transcriptional regulator compare
AO353_10430 -1.2 -2.4 chromosome partitioning protein ParB compare
AO353_05125 -1.2 -3.5 BolA family transcriptional regulator compare
AO353_17750 -1.2 -1.6 transcriptional regulator compare
AO353_16365 -1.1 -7.9 multidrug transporter AcrB compare
AO353_21815 -1.1 -3.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_02710 -1.1 -5.0 (p)ppGpp synthetase compare
AO353_14385 -1.1 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO353_17820 -1.1 -2.5 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO353_24805 -1.1 -3.9 TetR family transcriptional regulator compare
AO353_27660 -1.1 -3.3 leucyl/phenylalanyl-tRNA--protein transferase compare
AO353_03000 -1.1 -2.1 topoisomerase II compare
AO353_02025 -1.1 -5.2 mannose-1-phosphate guanyltransferase compare
AO353_27155 -1.1 -2.0 hypothetical protein compare
AO353_02195 -1.1 -2.7 spermidine synthase compare
AO353_23600 -1.1 -3.2 cobalt chelatase compare


Specific Phenotypes

For 22 genes in this experiment

For carbon source L-Ornithine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Ornithine across organisms